data_1WC4 # _model_server_result.job_id hs7cqliMLXQxxshacAUSog _model_server_result.datetime_utc '2024-10-27 04:33:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1wc4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1500}' # _entry.id 1WC4 # _exptl.entry_id 1WC4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 505.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1WC4 _cell.length_a 53.601 _cell.length_b 70.202 _cell.length_c 99.654 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WC4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C11 H18 N5 O12 P3' _chem_comp.formula_weight 505.208 _chem_comp.id APC _chem_comp.mon_nstd_flag . _chem_comp.name 'DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "ALPHA,BETA-METHYLENEADENOSINE-5'-TRIPHOSPHATE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G APC doub 13 n n PG O2G APC sing 14 n n PG O3G APC sing 15 n n PG O3B APC sing 16 n n O2G HOG2 APC sing 17 n n O3G HOG3 APC sing 18 n n PB O1B APC doub 19 n n PB O2B APC sing 20 n n PB O3B APC sing 21 n n PB C3A APC sing 22 n n O2B HOB2 APC sing 23 n n PA O1A APC doub 24 n n PA O2A APC sing 25 n n PA C3A APC sing 26 n n PA O5' APC sing 27 n n O2A HOA2 APC sing 28 n n C3A H3A1 APC sing 29 n n C3A H3A2 APC sing 30 n n O5' C5' APC sing 31 n n C5' C4' APC sing 32 n n C5' "H5'1" APC sing 33 n n C5' "H5'2" APC sing 34 n n C4' O4' APC sing 35 n n C4' C3' APC sing 36 n n C4' H4' APC sing 37 n n O4' C1' APC sing 38 n n C3' O3' APC sing 39 n n C3' C2' APC sing 40 n n C3' H3' APC sing 41 n n O3' HO3' APC sing 42 n n C2' O2' APC sing 43 n n C2' C1' APC sing 44 n n C2' H2' APC sing 45 n n O2' HO2' APC sing 46 n n C1' N9 APC sing 47 n n C1' H1' APC sing 48 n n N9 C8 APC sing 49 n y N9 C4 APC sing 50 n y C8 N7 APC doub 51 n y C8 H8 APC sing 52 n n N7 C5 APC sing 53 n y C5 C6 APC sing 54 n y C5 C4 APC doub 55 n y C6 N6 APC sing 56 n n C6 N1 APC doub 57 n y N6 HN61 APC sing 58 n n N6 HN62 APC sing 59 n n N1 C2 APC sing 60 n y C2 N3 APC doub 61 n y C2 H2 APC sing 62 n n N3 C4 APC sing 63 n y # _atom_sites.entry_id 1WC4 _atom_sites.fract_transf_matrix[1][1] 0.018656 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014245 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010035 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 APC A 1 1500 1500 APC APC . D 3 EU3 A 1 2100 2100 EU3 EU3 . E 2 APC B 1 1500 1500 APC APC . F 3 EU3 B 1 2100 2100 EU3 EU3 . G 4 HOH A 1 2001 2001 HOH HOH . H 4 HOH B 1 2001 2001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG APC . . . C 2 14.613 5.965 56.466 1 10.95 ? PG APC 1500 A 1 HETATM 2 O O1G APC . . . C 2 13.867 6.611 57.673 1 10.95 ? O1G APC 1500 A 1 HETATM 3 O O2G APC . . . C 2 13.587 5.427 55.483 1 10.95 ? O2G APC 1500 A 1 HETATM 4 O O3G APC . . . C 2 15.498 4.797 56.957 1 10.95 ? O3G APC 1500 A 1 HETATM 5 P PB APC . . . C 2 17.044 7.445 56.306 1 10.95 ? PB APC 1500 A 1 HETATM 6 O O1B APC . . . C 2 18.129 7.119 55.244 1 10.95 ? O1B APC 1500 A 1 HETATM 7 O O2B APC . . . C 2 17.091 8.937 56.648 1 10.95 ? O2B APC 1500 A 1 HETATM 8 O O3B APC . . . C 2 15.569 7.072 55.722 1 10.95 ? O3B APC 1500 A 1 HETATM 9 P PA APC . . . C 2 19.121 6.637 58.119 1 10.95 ? PA APC 1500 A 1 HETATM 10 O O1A APC . . . C 2 19.923 5.675 57.197 1 10.95 ? O1A APC 1500 A 1 HETATM 11 O O2A APC . . . C 2 19.568 8.096 57.855 1 10.95 ? O2A APC 1500 A 1 HETATM 12 C C3A APC . . . C 2 17.391 6.525 57.816 1 10.95 ? C3A APC 1500 A 1 HETATM 13 O O5' APC . . . C 2 19.42 6.294 59.652 1 10.95 ? O5' APC 1500 A 1 HETATM 14 C C5' APC . . . C 2 19.491 4.947 60.062 1 10.95 ? C5' APC 1500 A 1 HETATM 15 C C4' APC . . . C 2 20.734 4.739 60.921 1 10.95 ? C4' APC 1500 A 1 HETATM 16 O O4' APC . . . C 2 20.508 3.624 61.783 1 10.95 ? O4' APC 1500 A 1 HETATM 17 C C3' APC . . . C 2 21.957 4.427 60.058 1 10.95 ? C3' APC 1500 A 1 HETATM 18 O O3' APC . . . C 2 23.103 5.143 60.542 1 10.95 ? O3' APC 1500 A 1 HETATM 19 C C2' APC . . . C 2 22.122 2.941 60.176 1 10.95 ? C2' APC 1500 A 1 HETATM 20 O O2' APC . . . C 2 23.506 2.568 60.111 1 10.95 ? O2' APC 1500 A 1 HETATM 21 C C1' APC . . . C 2 21.498 2.601 61.518 1 10.95 ? C1' APC 1500 A 1 HETATM 22 N N9 APC . . . C 2 20.82 1.316 61.448 1 10.95 ? N9 APC 1500 A 1 HETATM 23 C C8 APC . . . C 2 19.473 1.037 61.377 1 10.95 ? C8 APC 1500 A 1 HETATM 24 N N7 APC . . . C 2 19.187 -0.225 61.334 1 10.95 ? N7 APC 1500 A 1 HETATM 25 C C5 APC . . . C 2 20.422 -0.831 61.392 1 10.95 ? C5 APC 1500 A 1 HETATM 26 C C6 APC . . . C 2 20.81 -2.198 61.376 1 10.95 ? C6 APC 1500 A 1 HETATM 27 N N6 APC . . . C 2 19.923 -3.189 61.318 1 10.95 ? N6 APC 1500 A 1 HETATM 28 N N1 APC . . . C 2 22.145 -2.496 61.441 1 10.95 ? N1 APC 1500 A 1 HETATM 29 C C2 APC . . . C 2 23.056 -1.448 61.506 1 10.95 ? C2 APC 1500 A 1 HETATM 30 N N3 APC . . . C 2 22.793 -0.124 61.524 1 10.95 ? N3 APC 1500 A 1 HETATM 31 C C4 APC . . . C 2 21.458 0.095 61.464 1 10.95 ? C4 APC 1500 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #