data_1WC7
#
_model_server_result.job_id            8UhoelhSNGSGzh-TTCCufg 
_model_server_result.datetime_utc      '2024-12-04 17:04:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1wc7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1214}' 
#
_entry.id    1WC7 
#
_exptl.entry_id    1WC7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              320.236 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ALANYL-PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          89.98 
_cell.angle_gamma         90 
_cell.entry_id            1WC7 
_cell.length_a            63.476 
_cell.length_b            81.691 
_cell.length_c            79.33 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1WC7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS dimeric 2 author_and_software_defined_assembly 1 
PQS dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,K,L 1 1 
C,D,H,I,J,M,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 A CYS 23 1_555 A SG CYS 87 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.556 ? 
disulf ? disulf2 A SG CYS 133 A CYS 134 1_555 A SG CYS 193 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? 
disulf ? disulf3 B SG CYS 22 B CYS 22 1_555 B SG CYS 98 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 B SG CYS 152 B CYS 140 1_555 B SG CYS 207 B CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf5 C SG CYS 22 H CYS 22 1_555 C SG CYS 98 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf6 C SG CYS 152 H CYS 140 1_555 C SG CYS 207 H CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf7 D SG CYS 133 L CYS 134 1_555 D SG CYS 193 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? 
#
_chem_comp.formula           'C11 H17 N2 O7 P' 
_chem_comp.formula_weight    320.236 
_chem_comp.id                PP3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ALANYL-PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'PYRIDOXYL-ALANINE-5-PHOSPHATE;VITAMIN B6 COMPLEXED WITH ALANINE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PP3 doub 260 n y 
N1 C6 PP3 sing 261 n y 
C2 C2A PP3 sing 262 n n 
C2 C3 PP3 sing 263 n y 
C2A H2A1 PP3 sing 264 n n 
C2A H2A2 PP3 sing 265 n n 
C2A H2A3 PP3 sing 266 n n 
C3 O3 PP3 sing 267 n n 
C3 C4 PP3 doub 268 n y 
O3 HO3 PP3 sing 269 n n 
C4 C4A PP3 sing 270 n n 
C4 C5 PP3 sing 271 n y 
C4A N PP3 sing 272 n n 
C4A H4A1 PP3 sing 273 n n 
C4A H4A2 PP3 sing 274 n n 
C5 C6 PP3 doub 275 n y 
C5 C5A PP3 sing 276 n n 
C6 H6 PP3 sing 277 n n 
C5A O4P PP3 sing 278 n n 
C5A H5A1 PP3 sing 279 n n 
C5A H5A2 PP3 sing 280 n n 
O4P P PP3 sing 281 n n 
P O1P PP3 doub 282 n n 
P O2P PP3 sing 283 n n 
P O3P PP3 sing 284 n n 
O2P HOP2 PP3 sing 285 n n 
O3P HOP3 PP3 sing 286 n n 
N CA PP3 sing 287 n n 
N HN2 PP3 sing 288 n n 
CA C PP3 sing 289 n n 
CA CB PP3 sing 290 n n 
CA HA PP3 sing 291 n n 
C O PP3 doub 292 n n 
C OXT PP3 sing 293 n n 
CB HB1 PP3 sing 294 n n 
CB HB2 PP3 sing 295 n n 
CB HB3 PP3 sing 296 n n 
OXT HXT PP3 sing 297 n n 
#
_atom_sites.entry_id                     1WC7 
_atom_sites.fract_transf_matrix[1][1]    0.015754 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    -0.000005 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012241 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012606 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 IOD A 1 1213 1213 IOD IOD . 
F 4 PP3 A 1 1214 1214 PP3 PP3 . 
G 3 IOD B 1 1214 1214 IOD IOD . 
H 3 IOD H 1 1214 1214 IOD IOD . 
I 3 IOD H 1 1215 1215 IOD IOD . 
J 3 IOD L 1 1213 1213 IOD IOD . 
K 5 HOH A 1 2001 2001 HOH HOH . 
K 5 HOH A 2 2002 2002 HOH HOH . 
K 5 HOH A 3 2003 2003 HOH HOH . 
K 5 HOH A 4 2004 2004 HOH HOH . 
K 5 HOH A 5 2005 2005 HOH HOH . 
K 5 HOH A 6 2006 2006 HOH HOH . 
K 5 HOH A 7 2007 2007 HOH HOH . 
K 5 HOH A 8 2008 2008 HOH HOH . 
K 5 HOH A 9 2009 2009 HOH HOH . 
K 5 HOH A 10 2010 2010 HOH HOH . 
K 5 HOH A 11 2011 2011 HOH HOH . 
K 5 HOH A 12 2012 2012 HOH HOH . 
K 5 HOH A 13 2013 2013 HOH HOH . 
K 5 HOH A 14 2014 2014 HOH HOH . 
K 5 HOH A 15 2015 2015 HOH HOH . 
K 5 HOH A 16 2016 2016 HOH HOH . 
K 5 HOH A 17 2017 2017 HOH HOH . 
K 5 HOH A 18 2018 2018 HOH HOH . 
K 5 HOH A 19 2019 2019 HOH HOH . 
K 5 HOH A 20 2020 2020 HOH HOH . 
K 5 HOH A 21 2021 2021 HOH HOH . 
K 5 HOH A 22 2022 2022 HOH HOH . 
K 5 HOH A 23 2023 2023 HOH HOH . 
K 5 HOH A 24 2024 2024 HOH HOH . 
K 5 HOH A 25 2025 2025 HOH HOH . 
K 5 HOH A 26 2026 2026 HOH HOH . 
K 5 HOH A 27 2027 2027 HOH HOH . 
K 5 HOH A 28 2028 2028 HOH HOH . 
K 5 HOH A 29 2029 2029 HOH HOH . 
K 5 HOH A 30 2030 2030 HOH HOH . 
K 5 HOH A 31 2031 2031 HOH HOH . 
L 5 HOH B 1 2001 2001 HOH HOH . 
L 5 HOH B 2 2002 2002 HOH HOH . 
L 5 HOH B 3 2003 2003 HOH HOH . 
L 5 HOH B 4 2004 2004 HOH HOH . 
L 5 HOH B 5 2005 2005 HOH HOH . 
L 5 HOH B 6 2006 2006 HOH HOH . 
L 5 HOH B 7 2007 2007 HOH HOH . 
L 5 HOH B 8 2008 2008 HOH HOH . 
L 5 HOH B 9 2009 2009 HOH HOH . 
L 5 HOH B 10 2010 2010 HOH HOH . 
L 5 HOH B 11 2011 2011 HOH HOH . 
L 5 HOH B 12 2012 2012 HOH HOH . 
L 5 HOH B 13 2013 2013 HOH HOH . 
L 5 HOH B 14 2014 2014 HOH HOH . 
L 5 HOH B 15 2015 2015 HOH HOH . 
L 5 HOH B 16 2016 2016 HOH HOH . 
L 5 HOH B 17 2017 2017 HOH HOH . 
L 5 HOH B 18 2018 2018 HOH HOH . 
L 5 HOH B 19 2019 2019 HOH HOH . 
L 5 HOH B 20 2020 2020 HOH HOH . 
L 5 HOH B 21 2021 2021 HOH HOH . 
L 5 HOH B 22 2022 2022 HOH HOH . 
L 5 HOH B 23 2023 2023 HOH HOH . 
L 5 HOH B 24 2024 2024 HOH HOH . 
L 5 HOH B 25 2025 2025 HOH HOH . 
M 5 HOH H 1 2001 2001 HOH HOH . 
M 5 HOH H 2 2002 2002 HOH HOH . 
M 5 HOH H 3 2003 2003 HOH HOH . 
M 5 HOH H 4 2004 2004 HOH HOH . 
M 5 HOH H 5 2005 2005 HOH HOH . 
M 5 HOH H 6 2006 2006 HOH HOH . 
M 5 HOH H 7 2007 2007 HOH HOH . 
M 5 HOH H 8 2008 2008 HOH HOH . 
M 5 HOH H 9 2009 2009 HOH HOH . 
M 5 HOH H 10 2010 2010 HOH HOH . 
M 5 HOH H 11 2011 2011 HOH HOH . 
M 5 HOH H 12 2012 2012 HOH HOH . 
M 5 HOH H 13 2013 2013 HOH HOH . 
M 5 HOH H 14 2014 2014 HOH HOH . 
M 5 HOH H 15 2015 2015 HOH HOH . 
M 5 HOH H 16 2016 2016 HOH HOH . 
M 5 HOH H 17 2017 2017 HOH HOH . 
M 5 HOH H 18 2018 2018 HOH HOH . 
M 5 HOH H 19 2019 2019 HOH HOH . 
M 5 HOH H 20 2020 2020 HOH HOH . 
M 5 HOH H 21 2021 2021 HOH HOH . 
M 5 HOH H 22 2022 2022 HOH HOH . 
M 5 HOH H 23 2023 2023 HOH HOH . 
M 5 HOH H 24 2024 2024 HOH HOH . 
M 5 HOH H 25 2025 2025 HOH HOH . 
M 5 HOH H 26 2026 2026 HOH HOH . 
M 5 HOH H 27 2027 2027 HOH HOH . 
M 5 HOH H 28 2028 2028 HOH HOH . 
M 5 HOH H 29 2029 2029 HOH HOH . 
M 5 HOH H 30 2030 2030 HOH HOH . 
M 5 HOH H 31 2031 2031 HOH HOH . 
M 5 HOH H 32 2032 2032 HOH HOH . 
M 5 HOH H 33 2033 2033 HOH HOH . 
N 5 HOH L 1 2001 2001 HOH HOH . 
N 5 HOH L 2 2002 2002 HOH HOH . 
N 5 HOH L 3 2003 2003 HOH HOH . 
N 5 HOH L 4 2004 2004 HOH HOH . 
N 5 HOH L 5 2005 2005 HOH HOH . 
N 5 HOH L 6 2006 2006 HOH HOH . 
N 5 HOH L 7 2007 2007 HOH HOH . 
N 5 HOH L 8 2008 2008 HOH HOH . 
N 5 HOH L 9 2009 2009 HOH HOH . 
N 5 HOH L 10 2010 2010 HOH HOH . 
N 5 HOH L 11 2011 2011 HOH HOH . 
N 5 HOH L 12 2012 2012 HOH HOH . 
N 5 HOH L 13 2013 2013 HOH HOH . 
N 5 HOH L 14 2014 2014 HOH HOH . 
N 5 HOH L 15 2015 2015 HOH HOH . 
N 5 HOH L 16 2016 2016 HOH HOH . 
N 5 HOH L 17 2017 2017 HOH HOH . 
N 5 HOH L 18 2018 2018 HOH HOH . 
N 5 HOH L 19 2019 2019 HOH HOH . 
N 5 HOH L 20 2020 2020 HOH HOH . 
N 5 HOH L 21 2021 2021 HOH HOH . 
N 5 HOH L 22 2022 2022 HOH HOH . 
N 5 HOH L 23 2023 2023 HOH HOH . 
N 5 HOH L 24 2024 2024 HOH HOH . 
N 5 HOH L 25 2025 2025 HOH HOH . 
N 5 HOH L 26 2026 2026 HOH HOH . 
N 5 HOH L 27 2027 2027 HOH HOH . 
N 5 HOH L 28 2028 2028 HOH HOH . 
N 5 HOH L 29 2029 2029 HOH HOH . 
N 5 HOH L 30 2030 2030 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PP3 . . . F 4 19.446 0.997 56.712 1 56.98 ? N1 PP3 1214 A 1 
HETATM 2 C C2 PP3 . . . F 4 19.73 -0.07 55.86 1 53.51 ? C2 PP3 1214 A 1 
HETATM 3 C C2A PP3 . . . F 4 20.435 0.464 54.622 1 55.08 ? C2A PP3 1214 A 1 
HETATM 4 C C3 PP3 . . . F 4 19.308 -1.409 56.28 1 47.1 ? C3 PP3 1214 A 1 
HETATM 5 O O3 PP3 . . . F 4 19.688 -2.34 55.35 1 63.07 ? O3 PP3 1214 A 1 
HETATM 6 C C4 PP3 . . . F 4 18.622 -1.654 57.514 1 37.77 ? C4 PP3 1214 A 1 
HETATM 7 C C4A PP3 . . . F 4 18.171 -3.036 57.989 1 28.59 ? C4A PP3 1214 A 1 
HETATM 8 C C5 PP3 . . . F 4 18.404 -0.435 58.269 1 37.73 ? C5 PP3 1214 A 1 
HETATM 9 C C6 PP3 . . . F 4 18.782 0.857 57.899 1 45.67 ? C6 PP3 1214 A 1 
HETATM 10 C C5A PP3 . . . F 4 17.691 -0.4 59.633 1 35.91 ? C5A PP3 1214 A 1 
HETATM 11 O O4P PP3 . . . F 4 17.231 0.835 60.043 1 44.3 ? O4P PP3 1214 A 1 
HETATM 12 P P PP3 . . . F 4 16.682 1.11 61.523 1 48.15 ? P PP3 1214 A 1 
HETATM 13 O O1P PP3 . . . F 4 17.58 0.591 62.527 1 61.14 ? O1P PP3 1214 A 1 
HETATM 14 O O2P PP3 . . . F 4 15.246 0.614 61.438 1 59.43 ? O2P PP3 1214 A 1 
HETATM 15 O O3P PP3 . . . F 4 16.731 2.611 61.687 1 47.95 ? O3P PP3 1214 A 1 
HETATM 16 N N PP3 . . . F 4 18.54 -3.963 56.858 1 20.24 ? N PP3 1214 A 1 
HETATM 17 C CA PP3 . . . F 4 17.633 -5.154 56.774 1 19.16 ? CA PP3 1214 A 1 
HETATM 18 C C PP3 . . . F 4 18.527 -6.335 56.367 1 16.8 ? C PP3 1214 A 1 
HETATM 19 O O PP3 . . . F 4 19.771 -5.839 56.103 1 20.15 ? O PP3 1214 A 1 
HETATM 20 C CB PP3 . . . F 4 16.449 -4.975 55.829 1 33.9 ? CB PP3 1214 A 1 
HETATM 21 O OXT PP3 . . . F 4 18.171 -7.586 56.296 1 37.74 ? OXT PP3 1214 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           21 
#