data_1WCO # _model_server_result.job_id 5K-Byo4YJKL2U27KxqgCfA _model_server_result.datetime_utc '2024-12-26 17:31:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1wco # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":101}' # _entry.id 1WCO # _exptl.entry_id 1WCO _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 418.307 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2E,6E)-12-fluoro-11-(fluoromethyl)-3,7-dimethyldodeca-2,6,10-trien-1-yl trihydrogen diphosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1WCO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WCO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 MUB _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C MUB 1 A 1 MUB L 2 MUB 3 n C NAG 2 A 2 NAG L 1 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 1 L ALA 3 1_555 A N FGA 2 L FGA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale2 A N ALA 1 L ALA 3 1_555 C C10 MUB . A MUB 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 A CD FGA 2 L FGA 4 1_555 A N LYS 3 L LYS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale4 A C LYS 3 L LYS 5 1_555 A N DAL 4 L DAL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale5 A C DAL 4 L DAL 6 1_555 A N DAL 5 L DAL 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale6 D PB FDF . L FDF 101 1_555 C O1 MUB . A MUB 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.605 ? covale ? covale7 B C ILE 1 N ILE 1 1_555 B N DBU 2 N DBU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale8 B C DBU 2 N DBU 2 1_555 B N DAL 3 N DAL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale9 B C DAL 3 N DAL 3 1_555 B N ILE 4 N ILE 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale10 B CB DAL 3 N DAL 3 1_555 B SG CYS 7 N CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.794 ? covale ? covale11 B C ILE 4 N ILE 4 1_555 B N DHA 5 N DHA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale12 B C DHA 5 N DHA 5 1_555 B N LEU 6 N LEU 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale13 B C CYS 7 N CYS 7 1_555 B N DBB 8 N DBB 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale14 B C DBB 8 N DBB 8 1_555 B N PRO 9 N PRO 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale15 B CB DBB 8 N DBB 8 1_555 B SG CYS 11 N CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.815 ? covale ? covale16 B C LYS 12 N LYS 12 1_555 B N DBB 13 N DBB 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale17 B C DBB 13 N DBB 13 1_555 B N GLY 14 N GLY 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale18 B CB DBB 13 N DBB 13 1_555 B SG CYS 19 N CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.828 ? covale ? covale19 B C LYS 22 N LYS 22 1_555 B N DBB 23 N DBB 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale20 B C DBB 23 N DBB 23 1_555 B N ALA 24 N ALA 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale21 B CB DBB 23 N DBB 23 1_555 B SG CYS 26 N CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.823 ? covale ? covale22 B C ALA 24 N ALA 24 1_555 B N DBB 25 N DBB 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale23 B C DBB 25 N DBB 25 1_555 B N CYS 26 N CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale24 B CB DBB 25 N DBB 25 1_555 B SG CYS 28 N CYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.817 ? covale ? covale25 B C VAL 32 N VAL 32 1_555 B N DHA 33 N DHA 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale26 B C DHA 33 N DHA 33 1_555 B N LYS 34 N LYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale27 C O4 MUB . A MUB 1 1_555 C C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? # _chem_comp.formula 'C15 H26 F2 O7 P2' _chem_comp.formula_weight 418.307 _chem_comp.id FDF _chem_comp.mon_nstd_flag . _chem_comp.name '(2E,6E)-12-fluoro-11-(fluoromethyl)-3,7-dimethyldodeca-2,6,10-trien-1-yl trihydrogen diphosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2A PA FDF doub 92 n n O3A PA FDF sing 93 n n PA O1A FDF sing 94 n n PA O1 FDF sing 95 n n O2B PB FDF doub 96 n n O1B PB FDF sing 97 n n O3B PB FDF sing 98 n n PB O3A FDF sing 99 n n C1 O1 FDF sing 100 n n C1 C2 FDF sing 101 n n C1 H1 FDF sing 102 e n C1 H1A FDF sing 103 n n O1A HO1A FDF sing 104 n n O1B HO1B FDF sing 105 n n C2 C3 FDF doub 106 n n C2 H2 FDF sing 107 n n C3 C4 FDF sing 108 n n C3 C5 FDF sing 109 n n O3B HO3B FDF sing 110 n n C4 H4 FDF sing 111 n n C4 H4A FDF sing 112 n n C4 H4B FDF sing 113 n n C6 C5 FDF sing 114 n n C5 H5 FDF sing 115 n n C5 H5A FDF sing 116 n n C7 C6 FDF sing 117 n n C6 H6 FDF sing 118 n n C6 H6A FDF sing 119 n n C8 C7 FDF doub 120 n n C7 H7 FDF sing 121 e n C9 C8 FDF sing 122 n n C8 C10 FDF sing 123 n n C11 C9 FDF sing 124 n n C9 H9 FDF sing 125 n n C9 H9A FDF sing 126 n n C10 H10 FDF sing 127 n n C10 H10A FDF sing 128 n n C10 H10B FDF sing 129 n n C11 C12 FDF sing 130 n n C11 H11 FDF sing 131 n n C11 H11A FDF sing 132 n n C13 C12 FDF doub 133 n n C12 H12 FDF sing 134 n n C15 C13 FDF sing 135 n n C13 C14 FDF sing 136 n n F2 C14 FDF sing 137 n n C14 H14 FDF sing 138 n n C14 H14A FDF sing 139 n n C15 F1 FDF sing 140 n n C15 H15 FDF sing 141 n n C15 H15A FDF sing 142 n n # _atom_sites.entry_id 1WCO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id D _pdbx_nonpoly_scheme.entity_id 4 _pdbx_nonpoly_scheme.mon_id FDF _pdbx_nonpoly_scheme.pdb_strand_id L _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 35 _pdbx_nonpoly_scheme.pdb_mon_id FDF _pdbx_nonpoly_scheme.auth_mon_id FPP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FDF . . . D 4 -1.052 10.391 -1.889 1 0.99 ? PA FDF 101 L 1 HETATM 2 P PB FDF . . . D 4 0.842 12.412 -1.715 1 0.92 ? PB FDF 101 L 1 HETATM 3 C C1 FDF . . . D 4 -1.279 9.35 -4.305 1 1.01 ? C1 FDF 101 L 1 HETATM 4 O O1 FDF . . . D 4 -0.572 10.214 -3.411 1 1.15 ? O1 FDF 101 L 1 HETATM 5 O O1A FDF . . . D 4 -1.319 9.048 -1.297 1 1.29 ? O1A FDF 101 L 1 HETATM 6 O O1B FDF . . . D 4 2.325 12.369 -1.644 1 1.05 ? O1B FDF 101 L 1 HETATM 7 C C2 FDF . . . D 4 -2.745 9.628 -4.205 1 0.95 ? C2 FDF 101 L 1 HETATM 8 O O2A FDF . . . D 4 -2.117 11.425 -1.852 1 1.4 ? O2A FDF 101 L 1 HETATM 9 O O2B FDF . . . D 4 0.15 13.505 -0.975 1 1.19 ? O2B FDF 101 L 1 HETATM 10 C C3 FDF . . . D 4 -3.648 9.142 -5.07 1 1.17 ? C3 FDF 101 L 1 HETATM 11 O O3A FDF . . . D 4 0.26 11.008 -1.206 1 1.06 ? O3A FDF 101 L 1 HETATM 12 C C4 FDF . . . D 4 -3.274 8.257 -6.254 1 1.31 ? C4 FDF 101 L 1 HETATM 13 C C5 FDF . . . D 4 -5.119 9.431 -4.934 1 1.61 ? C5 FDF 101 L 1 HETATM 14 C C6 FDF . . . D 4 -5.841 9.286 -6.267 1 1.15 ? C6 FDF 101 L 1 HETATM 15 C C7 FDF . . . D 4 -5.783 10.583 -7.012 1 1.38 ? C7 FDF 101 L 1 HETATM 16 C C8 FDF . . . D 4 -5.495 10.663 -8.32 1 1.66 ? C8 FDF 101 L 1 HETATM 17 C C9 FDF . . . D 4 -5.437 11.965 -9.057 1 1.93 ? C9 FDF 101 L 1 HETATM 18 C C10 FDF . . . D 4 -5.191 9.448 -9.183 1 2.53 ? C10 FDF 101 L 1 HETATM 19 C C11 FDF . . . D 4 -6.571 12.041 -10.068 1 2.5 ? C11 FDF 101 L 1 HETATM 20 C C12 FDF . . . D 4 -7.877 12.217 -9.355 1 3.14 ? C12 FDF 101 L 1 HETATM 21 C C13 FDF . . . D 4 -8.698 13.253 -9.577 1 3.84 ? C13 FDF 101 L 1 HETATM 22 C C14 FDF . . . D 4 -10.021 13.427 -8.849 1 4.24 ? C14 FDF 101 L 1 HETATM 23 C C15 FDF . . . D 4 -8.387 14.354 -10.58 1 4.81 ? C15 FDF 101 L 1 HETATM 24 H H1 FDF . . . D 4 -0.951 9.525 -5.315 1 1.27 ? H1 FDF 101 L 1 HETATM 25 H H1A FDF . . . D 4 -1.088 8.322 -4.034 1 1.19 ? H1A FDF 101 L 1 HETATM 26 H H2 FDF . . . D 4 -3.054 9.903 -3.207 1 0.99 ? H2 FDF 101 L 1 HETATM 27 H H4 FDF . . . D 4 -2.847 8.867 -7.034 1 1.64 ? H4 FDF 101 L 1 HETATM 28 H H4A FDF . . . D 4 -4.16 7.765 -6.623 1 1.71 ? H4A FDF 101 L 1 HETATM 29 H H4B FDF . . . D 4 -2.555 7.518 -5.933 1 1.77 ? H4B FDF 101 L 1 HETATM 30 H H5 FDF . . . D 4 -5.25 10.442 -4.571 1 2.28 ? H5 FDF 101 L 1 HETATM 31 H H5A FDF . . . D 4 -5.547 8.737 -4.229 1 2.2 ? H5A FDF 101 L 1 HETATM 32 H H6 FDF . . . D 4 -6.873 9.021 -6.084 1 1.27 ? H6 FDF 101 L 1 HETATM 33 H H6A FDF . . . D 4 -5.362 8.512 -6.85 1 1.74 ? H6A FDF 101 L 1 HETATM 34 H H7 FDF . . . D 4 -5.642 11.444 -6.377 1 1.94 ? H7 FDF 101 L 1 HETATM 35 H H9 FDF . . . D 4 -4.494 12.041 -9.575 1 2.07 ? H9 FDF 101 L 1 HETATM 36 H H9A FDF . . . D 4 -5.534 12.78 -8.355 1 2.4 ? H9A FDF 101 L 1 HETATM 37 H H10 FDF . . . D 4 -6.118 8.963 -9.455 1 2.97 ? H10 FDF 101 L 1 HETATM 38 H H10A FDF . . . D 4 -4.571 8.761 -8.628 1 2.87 ? H10A FDF 101 L 1 HETATM 39 H H10B FDF . . . D 4 -4.673 9.766 -10.075 1 2.99 ? H10B FDF 101 L 1 HETATM 40 H H11 FDF . . . D 4 -6.597 11.128 -10.646 1 2.96 ? H11 FDF 101 L 1 HETATM 41 H H11A FDF . . . D 4 -6.403 12.883 -10.722 1 2.64 ? H11A FDF 101 L 1 HETATM 42 H H12 FDF . . . D 4 -8.25 11.32 -8.879 1 3.42 ? H12 FDF 101 L 1 HETATM 43 H H14 FDF . . . D 4 -10.834 13.202 -9.525 1 4.42 ? H14 FDF 101 L 1 HETATM 44 H H14A FDF . . . D 4 -10.107 14.448 -8.504 1 4.56 ? H14A FDF 101 L 1 HETATM 45 H H15 FDF . . . D 4 -8.261 13.919 -11.56 1 5.17 ? H15 FDF 101 L 1 HETATM 46 H H15A FDF . . . D 4 -7.475 14.856 -10.286 1 5.14 ? H15A FDF 101 L 1 HETATM 47 H H14B FDF . . . D 4 -10.054 12.754 -8.004 1 4.56 ? H14B FDF 101 L 1 HETATM 48 H H15B FDF . . . D 4 -9.202 15.061 -10.599 1 5.15 ? H15B FDF 101 L 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 5977 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 48 #