data_1WD4 # _model_server_result.job_id doq-SHnTTRh7JhlXROp2-Q _model_server_result.datetime_utc '2024-11-06 05:36:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1wd4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 1WD4 # _exptl.entry_id 1WD4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.13 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-L-arabinofuranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1WD4 _cell.length_a 39.461 _cell.length_b 98.62 _cell.length_c 144.135 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WD4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG ? 501 NAG 2 n B NAG 2 B 2 NAG ? 502 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 21 1_555 A SG CYS 14 A CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 64 A CYS 81 1_555 A SG CYS 69 A CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 159 A CYS 176 1_555 A SG CYS 160 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 384 A CYS 401 1_555 A SG CYS 422 A CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? covale ? covale1 A ND2 ASN 185 A ASN 202 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.359 ? covale ? covale2 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? # _chem_comp.formula 'C5 H10 O5' _chem_comp.formula_weight 150.13 _chem_comp.id AHR _chem_comp.mon_nstd_flag . _chem_comp.name alpha-L-arabinofuranose _chem_comp.type 'l-saccharide, alpha linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version AHR LArafa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 AHR a-L-arabinofuranose 'COMMON NAME' GMML 1 AHR a-L-Araf 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 AHR Ara 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1WD4 _atom_sites.fract_transf_matrix[1][1] 0.025341 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01014 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006938 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 AHR A 1 601 601 AHR AHR . D 3 AHR A 1 602 602 AHR AHR . E 3 AHR A 1 603 603 AHR AHR . F 4 HOH A 1 604 1 HOH WAT . F 4 HOH A 2 605 2 HOH WAT . F 4 HOH A 3 606 3 HOH WAT . F 4 HOH A 4 607 4 HOH WAT . F 4 HOH A 5 608 5 HOH WAT . F 4 HOH A 6 609 6 HOH WAT . F 4 HOH A 7 610 7 HOH WAT . F 4 HOH A 8 611 8 HOH WAT . F 4 HOH A 9 612 9 HOH WAT . F 4 HOH A 10 613 10 HOH WAT . F 4 HOH A 11 614 11 HOH WAT . F 4 HOH A 12 615 12 HOH WAT . F 4 HOH A 13 616 13 HOH WAT . F 4 HOH A 14 617 14 HOH WAT . F 4 HOH A 15 618 15 HOH WAT . F 4 HOH A 16 619 16 HOH WAT . F 4 HOH A 17 620 17 HOH WAT . F 4 HOH A 18 621 18 HOH WAT . F 4 HOH A 19 622 19 HOH WAT . F 4 HOH A 20 623 20 HOH WAT . F 4 HOH A 21 624 21 HOH WAT . F 4 HOH A 22 625 22 HOH WAT . F 4 HOH A 23 626 23 HOH WAT . F 4 HOH A 24 627 24 HOH WAT . F 4 HOH A 25 628 25 HOH WAT . F 4 HOH A 26 629 26 HOH WAT . F 4 HOH A 27 630 27 HOH WAT . F 4 HOH A 28 631 28 HOH WAT . F 4 HOH A 29 632 29 HOH WAT . F 4 HOH A 30 633 30 HOH WAT . F 4 HOH A 31 634 31 HOH WAT . F 4 HOH A 32 635 32 HOH WAT . F 4 HOH A 33 636 33 HOH WAT . F 4 HOH A 34 637 34 HOH WAT . F 4 HOH A 35 638 35 HOH WAT . F 4 HOH A 36 639 36 HOH WAT . F 4 HOH A 37 640 37 HOH WAT . F 4 HOH A 38 641 38 HOH WAT . F 4 HOH A 39 642 39 HOH WAT . F 4 HOH A 40 643 40 HOH WAT . F 4 HOH A 41 644 41 HOH WAT . F 4 HOH A 42 645 42 HOH WAT . F 4 HOH A 43 646 43 HOH WAT . F 4 HOH A 44 647 44 HOH WAT . F 4 HOH A 45 648 45 HOH WAT . F 4 HOH A 46 649 46 HOH WAT . F 4 HOH A 47 650 47 HOH WAT . F 4 HOH A 48 651 48 HOH WAT . F 4 HOH A 49 652 49 HOH WAT . F 4 HOH A 50 653 50 HOH WAT . F 4 HOH A 51 654 51 HOH WAT . F 4 HOH A 52 655 52 HOH WAT . F 4 HOH A 53 656 53 HOH WAT . F 4 HOH A 54 657 54 HOH WAT . F 4 HOH A 55 658 55 HOH WAT . F 4 HOH A 56 659 56 HOH WAT . F 4 HOH A 57 660 57 HOH WAT . F 4 HOH A 58 661 58 HOH WAT . F 4 HOH A 59 662 59 HOH WAT . F 4 HOH A 60 663 60 HOH WAT . F 4 HOH A 61 664 61 HOH WAT . F 4 HOH A 62 665 62 HOH WAT . F 4 HOH A 63 666 63 HOH WAT . F 4 HOH A 64 667 64 HOH WAT . F 4 HOH A 65 668 65 HOH WAT . F 4 HOH A 66 669 66 HOH WAT . F 4 HOH A 67 670 67 HOH WAT . F 4 HOH A 68 671 68 HOH WAT . F 4 HOH A 69 672 69 HOH WAT . F 4 HOH A 70 673 70 HOH WAT . F 4 HOH A 71 674 71 HOH WAT . F 4 HOH A 72 675 72 HOH WAT . F 4 HOH A 73 676 73 HOH WAT . F 4 HOH A 74 677 74 HOH WAT . F 4 HOH A 75 678 75 HOH WAT . F 4 HOH A 76 679 76 HOH WAT . F 4 HOH A 77 680 77 HOH WAT . F 4 HOH A 78 681 78 HOH WAT . F 4 HOH A 79 682 79 HOH WAT . F 4 HOH A 80 683 80 HOH WAT . F 4 HOH A 81 684 81 HOH WAT . F 4 HOH A 82 685 82 HOH WAT . F 4 HOH A 83 686 83 HOH WAT . F 4 HOH A 84 687 84 HOH WAT . F 4 HOH A 85 688 85 HOH WAT . F 4 HOH A 86 689 86 HOH WAT . F 4 HOH A 87 690 87 HOH WAT . F 4 HOH A 88 691 88 HOH WAT . F 4 HOH A 89 692 89 HOH WAT . F 4 HOH A 90 693 90 HOH WAT . F 4 HOH A 91 694 91 HOH WAT . F 4 HOH A 92 695 92 HOH WAT . F 4 HOH A 93 696 93 HOH WAT . F 4 HOH A 94 697 94 HOH WAT . F 4 HOH A 95 698 95 HOH WAT . F 4 HOH A 96 699 96 HOH WAT . F 4 HOH A 97 700 97 HOH WAT . F 4 HOH A 98 701 98 HOH WAT . F 4 HOH A 99 702 99 HOH WAT . F 4 HOH A 100 703 100 HOH WAT . F 4 HOH A 101 704 101 HOH WAT . F 4 HOH A 102 705 102 HOH WAT . F 4 HOH A 103 706 103 HOH WAT . F 4 HOH A 104 707 104 HOH WAT . F 4 HOH A 105 708 105 HOH WAT . F 4 HOH A 106 709 106 HOH WAT . F 4 HOH A 107 710 107 HOH WAT . F 4 HOH A 108 711 108 HOH WAT . F 4 HOH A 109 712 109 HOH WAT . F 4 HOH A 110 713 110 HOH WAT . F 4 HOH A 111 714 111 HOH WAT . F 4 HOH A 112 715 112 HOH WAT . F 4 HOH A 113 716 113 HOH WAT . F 4 HOH A 114 717 114 HOH WAT . F 4 HOH A 115 718 115 HOH WAT . F 4 HOH A 116 719 116 HOH WAT . F 4 HOH A 117 720 117 HOH WAT . F 4 HOH A 118 721 118 HOH WAT . F 4 HOH A 119 722 119 HOH WAT . F 4 HOH A 120 723 120 HOH WAT . F 4 HOH A 121 724 121 HOH WAT . F 4 HOH A 122 725 122 HOH WAT . F 4 HOH A 123 726 123 HOH WAT . F 4 HOH A 124 727 124 HOH WAT . F 4 HOH A 125 728 125 HOH WAT . F 4 HOH A 126 729 126 HOH WAT . F 4 HOH A 127 730 127 HOH WAT . F 4 HOH A 128 731 128 HOH WAT . F 4 HOH A 129 732 129 HOH WAT . F 4 HOH A 130 733 130 HOH WAT . F 4 HOH A 131 734 131 HOH WAT . F 4 HOH A 132 735 132 HOH WAT . F 4 HOH A 133 736 133 HOH WAT . F 4 HOH A 134 737 134 HOH WAT . F 4 HOH A 135 738 135 HOH WAT . F 4 HOH A 136 739 136 HOH WAT . F 4 HOH A 137 740 137 HOH WAT . F 4 HOH A 138 741 138 HOH WAT . F 4 HOH A 139 742 139 HOH WAT . F 4 HOH A 140 743 140 HOH WAT . F 4 HOH A 141 744 141 HOH WAT . F 4 HOH A 142 745 142 HOH WAT . F 4 HOH A 143 746 143 HOH WAT . F 4 HOH A 144 747 144 HOH WAT . F 4 HOH A 145 748 145 HOH WAT . F 4 HOH A 146 749 146 HOH WAT . F 4 HOH A 147 750 147 HOH WAT . F 4 HOH A 148 751 148 HOH WAT . F 4 HOH A 149 752 149 HOH WAT . F 4 HOH A 150 753 150 HOH WAT . F 4 HOH A 151 754 151 HOH WAT . F 4 HOH A 152 755 152 HOH WAT . F 4 HOH A 153 756 153 HOH WAT . F 4 HOH A 154 757 154 HOH WAT . F 4 HOH A 155 758 155 HOH WAT . F 4 HOH A 156 759 156 HOH WAT . F 4 HOH A 157 760 157 HOH WAT . F 4 HOH A 158 761 158 HOH WAT . F 4 HOH A 159 762 159 HOH WAT . F 4 HOH A 160 763 160 HOH WAT . F 4 HOH A 161 764 161 HOH WAT . F 4 HOH A 162 765 162 HOH WAT . F 4 HOH A 163 766 163 HOH WAT . F 4 HOH A 164 767 164 HOH WAT . F 4 HOH A 165 768 165 HOH WAT . F 4 HOH A 166 769 166 HOH WAT . F 4 HOH A 167 770 167 HOH WAT . F 4 HOH A 168 771 168 HOH WAT . F 4 HOH A 169 772 169 HOH WAT . F 4 HOH A 170 773 170 HOH WAT . F 4 HOH A 171 774 171 HOH WAT . F 4 HOH A 172 775 172 HOH WAT . F 4 HOH A 173 776 173 HOH WAT . F 4 HOH A 174 777 174 HOH WAT . F 4 HOH A 175 778 175 HOH WAT . F 4 HOH A 176 779 176 HOH WAT . F 4 HOH A 177 780 177 HOH WAT . F 4 HOH A 178 781 178 HOH WAT . F 4 HOH A 179 782 179 HOH WAT . F 4 HOH A 180 783 180 HOH WAT . F 4 HOH A 181 784 181 HOH WAT . F 4 HOH A 182 785 182 HOH WAT . F 4 HOH A 183 786 183 HOH WAT . F 4 HOH A 184 787 184 HOH WAT . F 4 HOH A 185 788 185 HOH WAT . F 4 HOH A 186 789 186 HOH WAT . F 4 HOH A 187 790 187 HOH WAT . F 4 HOH A 188 791 188 HOH WAT . F 4 HOH A 189 792 189 HOH WAT . F 4 HOH A 190 793 190 HOH WAT . F 4 HOH A 191 794 191 HOH WAT . F 4 HOH A 192 795 192 HOH WAT . F 4 HOH A 193 796 193 HOH WAT . F 4 HOH A 194 797 194 HOH WAT . F 4 HOH A 195 798 195 HOH WAT . F 4 HOH A 196 799 196 HOH WAT . F 4 HOH A 197 800 197 HOH WAT . F 4 HOH A 198 801 198 HOH WAT . F 4 HOH A 199 802 199 HOH WAT . F 4 HOH A 200 803 200 HOH WAT . F 4 HOH A 201 804 201 HOH WAT . F 4 HOH A 202 805 202 HOH WAT . F 4 HOH A 203 806 203 HOH WAT . F 4 HOH A 204 807 204 HOH WAT . F 4 HOH A 205 808 205 HOH WAT . F 4 HOH A 206 809 206 HOH WAT . F 4 HOH A 207 810 207 HOH WAT . F 4 HOH A 208 811 208 HOH WAT . F 4 HOH A 209 812 209 HOH WAT . F 4 HOH A 210 813 210 HOH WAT . F 4 HOH A 211 814 211 HOH WAT . F 4 HOH A 212 815 212 HOH WAT . F 4 HOH A 213 816 213 HOH WAT . F 4 HOH A 214 817 214 HOH WAT . F 4 HOH A 215 818 215 HOH WAT . F 4 HOH A 216 819 216 HOH WAT . F 4 HOH A 217 820 217 HOH WAT . F 4 HOH A 218 821 218 HOH WAT . F 4 HOH A 219 822 219 HOH WAT . F 4 HOH A 220 823 220 HOH WAT . F 4 HOH A 221 824 221 HOH WAT . F 4 HOH A 222 825 222 HOH WAT . F 4 HOH A 223 826 223 HOH WAT . F 4 HOH A 224 827 224 HOH WAT . F 4 HOH A 225 828 225 HOH WAT . F 4 HOH A 226 829 226 HOH WAT . F 4 HOH A 227 830 227 HOH WAT . F 4 HOH A 228 831 228 HOH WAT . F 4 HOH A 229 832 229 HOH WAT . F 4 HOH A 230 833 230 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5 AHR . . . D 3 35.404 3.428 18.453 1 21.86 ? O5 AHR 602 A 1 HETATM 2 C C5 AHR . . . D 3 35.748 3.977 17.185 1 23.68 ? C5 AHR 602 A 1 HETATM 3 C C4 AHR . . . D 3 35.388 5.493 17.104 1 26.02 ? C4 AHR 602 A 1 HETATM 4 O O4 AHR . . . D 3 36.17 6.213 18.039 1 23.16 ? O4 AHR 602 A 1 HETATM 5 C C3 AHR . . . D 3 33.95 5.87 17.491 1 23.11 ? C3 AHR 602 A 1 HETATM 6 O O3 AHR . . . D 3 33.019 5.621 16.436 1 23.66 ? O3 AHR 602 A 1 HETATM 7 C C2 AHR . . . D 3 34.036 7.345 17.865 1 24.31 ? C2 AHR 602 A 1 HETATM 8 O O2 AHR . . . D 3 33.056 7.731 18.882 1 25.85 ? O2 AHR 602 A 1 HETATM 9 C C1 AHR . . . D 3 35.491 7.444 18.376 1 25.44 ? C1 AHR 602 A 1 HETATM 10 O O1 AHR . . . D 3 36.143 8.544 17.722 1 30.6 ? O1 AHR 602 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #