data_1WD9 # _model_server_result.job_id su76-dAea8R0tdoATmazuQ _model_server_result.datetime_utc '2024-12-24 00:47:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1wd9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":904}' # _entry.id 1WD9 # _exptl.entry_id 1WD9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 124.37 _cell.angle_gamma 90 _cell.entry_id 1WD9 _cell.length_a 146.389 _cell.length_b 60.094 _cell.length_c 115.339 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WD9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND2 ASN 160 A ASN 153 1_555 C CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.328 ? metalc ? metalc2 A OD1 ASN 160 A ASN 153 1_555 C CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.039 ? metalc ? metalc3 A OD1 ASP 162 A ASP 155 1_555 C CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc4 A OD2 ASP 162 A ASP 155 1_555 D CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc5 A OD2 ASP 164 A ASP 157 1_555 C CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? metalc ? metalc6 A OD2 ASP 164 A ASP 157 1_555 D CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc7 A OD1 ASP 164 A ASP 157 1_555 D CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.13 ? metalc ? metalc8 A OD2 ASP 172 A ASP 165 1_555 C CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc9 A O ASP 172 A ASP 165 1_555 F CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc10 A OD2 ASP 175 A ASP 168 1_555 F CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc11 A O GLU 177 A GLU 170 1_555 F CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc12 A OD1 ASP 183 A ASP 176 1_555 C CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc13 A OD2 ASP 186 A ASP 179 1_555 C CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc14 A OD2 ASP 186 A ASP 179 1_555 D CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc15 A OD1 ASP 186 A ASP 179 1_555 D CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc16 A OE1 GLN 356 A GLN 349 1_555 B CA CA . A CA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc17 A OE1 GLU 360 A GLU 353 1_555 B CA CA . A CA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? metalc ? metalc18 A OD2 ASP 376 A ASP 369 1_555 E CA CA . A CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc19 A OD1 ASP 376 A ASP 369 1_555 E CA CA . A CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.36 ? metalc ? metalc20 A O SER 377 A SER 370 1_555 E CA CA . A CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc21 A OD1 ASN 380 A ASN 373 1_555 E CA CA . A CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? metalc ? metalc22 A OD1 ASP 395 A ASP 388 1_555 D CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.167 ? metalc ? metalc23 A O PHE 414 A PHE 407 1_555 B CA CA . A CA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc24 A O LEU 417 A LEU 410 1_555 B CA CA . A CA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc25 A OE1 GLU 418 A GLU 411 1_555 B CA CA . A CA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1WD9 _atom_sites.fract_transf_matrix[1][1] 0.006831 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004672 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016641 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010504 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 900 900 CA CA . C 2 CA A 1 901 901 CA CA . D 2 CA A 1 902 902 CA CA . E 2 CA A 1 903 903 CA CA . F 2 CA A 1 904 904 CA CA . G 3 SO4 A 1 905 905 SO4 SO4 . H 3 SO4 A 1 906 906 SO4 SO4 . I 3 SO4 A 1 907 907 SO4 SO4 . J 4 HOH A 1 908 1 HOH HOH . J 4 HOH A 2 909 2 HOH HOH . J 4 HOH A 3 910 3 HOH HOH . J 4 HOH A 4 911 4 HOH HOH . J 4 HOH A 5 912 5 HOH HOH . J 4 HOH A 6 913 6 HOH HOH . J 4 HOH A 7 914 7 HOH HOH . J 4 HOH A 8 915 8 HOH HOH . J 4 HOH A 9 916 9 HOH HOH . J 4 HOH A 10 917 10 HOH HOH . J 4 HOH A 11 918 11 HOH HOH . J 4 HOH A 12 919 12 HOH HOH . J 4 HOH A 13 920 13 HOH HOH . J 4 HOH A 14 921 14 HOH HOH . J 4 HOH A 15 922 15 HOH HOH . J 4 HOH A 16 923 16 HOH HOH . J 4 HOH A 17 924 17 HOH HOH . J 4 HOH A 18 925 18 HOH HOH . J 4 HOH A 19 926 19 HOH HOH . J 4 HOH A 20 927 20 HOH HOH . J 4 HOH A 21 928 21 HOH HOH . J 4 HOH A 22 929 22 HOH HOH . J 4 HOH A 23 930 23 HOH HOH . J 4 HOH A 24 931 24 HOH HOH . J 4 HOH A 25 932 25 HOH HOH . J 4 HOH A 26 933 26 HOH HOH . J 4 HOH A 27 934 27 HOH HOH . J 4 HOH A 28 935 28 HOH HOH . J 4 HOH A 29 936 29 HOH HOH . J 4 HOH A 30 937 30 HOH HOH . J 4 HOH A 31 938 31 HOH HOH . J 4 HOH A 32 939 32 HOH HOH . J 4 HOH A 33 940 33 HOH HOH . J 4 HOH A 34 941 34 HOH HOH . J 4 HOH A 35 942 35 HOH HOH . J 4 HOH A 36 943 36 HOH HOH . J 4 HOH A 37 944 37 HOH HOH . J 4 HOH A 38 945 38 HOH HOH . J 4 HOH A 39 946 39 HOH HOH . J 4 HOH A 40 947 40 HOH HOH . J 4 HOH A 41 948 41 HOH HOH . J 4 HOH A 42 949 42 HOH HOH . J 4 HOH A 43 950 43 HOH HOH . J 4 HOH A 44 951 44 HOH HOH . J 4 HOH A 45 952 45 HOH HOH . J 4 HOH A 46 953 46 HOH HOH . J 4 HOH A 47 954 47 HOH HOH . J 4 HOH A 48 955 48 HOH HOH . J 4 HOH A 49 956 49 HOH HOH . J 4 HOH A 50 957 50 HOH HOH . J 4 HOH A 51 958 51 HOH HOH . J 4 HOH A 52 959 52 HOH HOH . J 4 HOH A 53 960 53 HOH HOH . J 4 HOH A 54 961 54 HOH HOH . J 4 HOH A 55 962 55 HOH HOH . J 4 HOH A 56 963 56 HOH HOH . J 4 HOH A 57 964 57 HOH HOH . J 4 HOH A 58 965 58 HOH HOH . J 4 HOH A 59 966 59 HOH HOH . J 4 HOH A 60 967 60 HOH HOH . J 4 HOH A 61 968 61 HOH HOH . J 4 HOH A 62 969 62 HOH HOH . J 4 HOH A 63 970 63 HOH HOH . J 4 HOH A 64 971 64 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x 20.798 _atom_site.Cartn_y 45.099 _atom_site.Cartn_z -15.373 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 71.12 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 904 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #