data_1WDA
#
_model_server_result.job_id            hyZYTNssuSbY8tVvQ73eIw 
_model_server_result.datetime_utc      '2024-10-13 02:22:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1wda 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":904}' 
#
_entry.id    1WDA 
#
_exptl.entry_id    1WDA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          124.23 
_cell.angle_gamma         90 
_cell.entry_id            1WDA 
_cell.length_a            146.133 
_cell.length_b            60.045 
_cell.length_c            115.406 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1WDA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 160 A ASN 153 1_555 C CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? 
metalc ? metalc2 A OD1 ASP 162 A ASP 155 1_555 C CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
metalc ? metalc3 A OD2 ASP 162 A ASP 155 1_555 D CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? 
metalc ? metalc4 A OD2 ASP 164 A ASP 157 1_555 C CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.931 ? 
metalc ? metalc5 A OD2 ASP 164 A ASP 157 1_555 D CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc6 A OD1 ASP 164 A ASP 157 1_555 D CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? 
metalc ? metalc7 A OD2 ASP 172 A ASP 165 1_555 C CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc8 A O ASP 172 A ASP 165 1_555 F CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc9 A OD1 ASP 175 A ASP 168 1_555 F CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? 
metalc ? metalc10 A O GLU 177 A GLU 170 1_555 F CA CA . A CA 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? 
metalc ? metalc11 A OD1 ASP 183 A ASP 176 1_555 C CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? 
metalc ? metalc12 A OD2 ASP 186 A ASP 179 1_555 C CA CA . A CA 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? 
metalc ? metalc13 A OD2 ASP 186 A ASP 179 1_555 D CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc14 A OD1 ASP 186 A ASP 179 1_555 D CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? 
metalc ? metalc15 A OE1 GLN 356 A GLN 349 1_555 B CA CA . A CA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
metalc ? metalc16 A OE1 GLU 358 A GLU 351 1_555 E CA CA . A CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? 
metalc ? metalc17 A OE1 GLU 360 A GLU 353 1_555 B CA CA . A CA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? 
metalc ? metalc18 A OD1 ASP 376 A ASP 369 1_555 E CA CA . A CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc19 A OD2 ASP 376 A ASP 369 1_555 E CA CA . A CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.344 ? 
metalc ? metalc20 A O SER 377 A SER 370 1_555 E CA CA . A CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc21 A OD1 ASN 380 A ASN 373 1_555 E CA CA . A CA 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? 
metalc ? metalc22 A OD1 ASP 395 A ASP 388 1_555 D CA CA . A CA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? 
metalc ? metalc23 A O PHE 414 A PHE 407 1_555 B CA CA . A CA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
metalc ? metalc24 A O LEU 417 A LEU 410 1_555 B CA CA . A CA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? 
metalc ? metalc25 A OE1 GLU 418 A GLU 411 1_555 B CA CA . A CA 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? 
metalc ? metalc26 B CA CA . A CA 900 1_555 K O HOH . A HOH 919 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc27 B CA CA . A CA 900 1_555 K O HOH . A HOH 942 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
metalc ? metalc28 E CA CA . A CA 903 1_555 K O HOH . A HOH 1065 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? 
metalc ? metalc29 F CA CA . A CA 904 1_555 K O HOH . A HOH 1059 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? 
metalc ? metalc30 F CA CA . A CA 904 1_555 K O HOH . A HOH 1066 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1WDA 
_atom_sites.fract_transf_matrix[1][1]    0.006843 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004656 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016654 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01048 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 900 900 CA CA . 
C 2 CA A 1 901 901 CA CA . 
D 2 CA A 1 902 902 CA CA . 
E 2 CA A 1 903 903 CA CA . 
F 2 CA A 1 904 904 CA CA . 
G 3 SO4 A 1 905 905 SO4 SO4 . 
H 3 SO4 A 1 906 906 SO4 SO4 . 
I 3 SO4 A 1 907 907 SO4 SO4 . 
J 4 BAG A 1 801 801 BAG BAG . 
K 5 HOH A 1 908 1 HOH HOH . 
K 5 HOH A 2 909 2 HOH HOH . 
K 5 HOH A 3 910 3 HOH HOH . 
K 5 HOH A 4 911 4 HOH HOH . 
K 5 HOH A 5 912 5 HOH HOH . 
K 5 HOH A 6 913 6 HOH HOH . 
K 5 HOH A 7 914 7 HOH HOH . 
K 5 HOH A 8 915 8 HOH HOH . 
K 5 HOH A 9 916 9 HOH HOH . 
K 5 HOH A 10 917 10 HOH HOH . 
K 5 HOH A 11 918 11 HOH HOH . 
K 5 HOH A 12 919 12 HOH HOH . 
K 5 HOH A 13 920 13 HOH HOH . 
K 5 HOH A 14 921 14 HOH HOH . 
K 5 HOH A 15 922 15 HOH HOH . 
K 5 HOH A 16 923 16 HOH HOH . 
K 5 HOH A 17 924 17 HOH HOH . 
K 5 HOH A 18 925 18 HOH HOH . 
K 5 HOH A 19 926 19 HOH HOH . 
K 5 HOH A 20 927 20 HOH HOH . 
K 5 HOH A 21 928 21 HOH HOH . 
K 5 HOH A 22 929 22 HOH HOH . 
K 5 HOH A 23 930 23 HOH HOH . 
K 5 HOH A 24 931 24 HOH HOH . 
K 5 HOH A 25 932 25 HOH HOH . 
K 5 HOH A 26 933 26 HOH HOH . 
K 5 HOH A 27 934 27 HOH HOH . 
K 5 HOH A 28 935 28 HOH HOH . 
K 5 HOH A 29 936 29 HOH HOH . 
K 5 HOH A 30 937 30 HOH HOH . 
K 5 HOH A 31 938 31 HOH HOH . 
K 5 HOH A 32 939 32 HOH HOH . 
K 5 HOH A 33 940 33 HOH HOH . 
K 5 HOH A 34 941 34 HOH HOH . 
K 5 HOH A 35 942 35 HOH HOH . 
K 5 HOH A 36 943 36 HOH HOH . 
K 5 HOH A 37 944 37 HOH HOH . 
K 5 HOH A 38 945 38 HOH HOH . 
K 5 HOH A 39 946 39 HOH HOH . 
K 5 HOH A 40 947 40 HOH HOH . 
K 5 HOH A 41 948 41 HOH HOH . 
K 5 HOH A 42 949 42 HOH HOH . 
K 5 HOH A 43 950 43 HOH HOH . 
K 5 HOH A 44 951 44 HOH HOH . 
K 5 HOH A 45 952 45 HOH HOH . 
K 5 HOH A 46 953 46 HOH HOH . 
K 5 HOH A 47 954 47 HOH HOH . 
K 5 HOH A 48 955 48 HOH HOH . 
K 5 HOH A 49 956 49 HOH HOH . 
K 5 HOH A 50 957 50 HOH HOH . 
K 5 HOH A 51 958 51 HOH HOH . 
K 5 HOH A 52 959 52 HOH HOH . 
K 5 HOH A 53 960 53 HOH HOH . 
K 5 HOH A 54 961 54 HOH HOH . 
K 5 HOH A 55 962 55 HOH HOH . 
K 5 HOH A 56 963 56 HOH HOH . 
K 5 HOH A 57 964 57 HOH HOH . 
K 5 HOH A 58 965 58 HOH HOH . 
K 5 HOH A 59 966 59 HOH HOH . 
K 5 HOH A 60 967 60 HOH HOH . 
K 5 HOH A 61 968 61 HOH HOH . 
K 5 HOH A 62 969 62 HOH HOH . 
K 5 HOH A 63 970 63 HOH HOH . 
K 5 HOH A 64 971 64 HOH HOH . 
K 5 HOH A 65 972 65 HOH HOH . 
K 5 HOH A 66 973 66 HOH HOH . 
K 5 HOH A 67 974 67 HOH HOH . 
K 5 HOH A 68 975 68 HOH HOH . 
K 5 HOH A 69 976 69 HOH HOH . 
K 5 HOH A 70 977 70 HOH HOH . 
K 5 HOH A 71 978 71 HOH HOH . 
K 5 HOH A 72 979 72 HOH HOH . 
K 5 HOH A 73 980 73 HOH HOH . 
K 5 HOH A 74 981 74 HOH HOH . 
K 5 HOH A 75 982 75 HOH HOH . 
K 5 HOH A 76 983 76 HOH HOH . 
K 5 HOH A 77 984 77 HOH HOH . 
K 5 HOH A 78 985 78 HOH HOH . 
K 5 HOH A 79 986 79 HOH HOH . 
K 5 HOH A 80 987 80 HOH HOH . 
K 5 HOH A 81 988 81 HOH HOH . 
K 5 HOH A 82 989 82 HOH HOH . 
K 5 HOH A 83 990 83 HOH HOH . 
K 5 HOH A 84 991 84 HOH HOH . 
K 5 HOH A 85 992 85 HOH HOH . 
K 5 HOH A 86 993 86 HOH HOH . 
K 5 HOH A 87 994 87 HOH HOH . 
K 5 HOH A 88 995 88 HOH HOH . 
K 5 HOH A 89 996 89 HOH HOH . 
K 5 HOH A 90 997 90 HOH HOH . 
K 5 HOH A 91 998 91 HOH HOH . 
K 5 HOH A 92 999 92 HOH HOH . 
K 5 HOH A 93 1000 93 HOH HOH . 
K 5 HOH A 94 1001 94 HOH HOH . 
K 5 HOH A 95 1002 95 HOH HOH . 
K 5 HOH A 96 1003 96 HOH HOH . 
K 5 HOH A 97 1004 97 HOH HOH . 
K 5 HOH A 98 1005 98 HOH HOH . 
K 5 HOH A 99 1006 99 HOH HOH . 
K 5 HOH A 100 1007 100 HOH HOH . 
K 5 HOH A 101 1008 101 HOH HOH . 
K 5 HOH A 102 1009 102 HOH HOH . 
K 5 HOH A 103 1010 103 HOH HOH . 
K 5 HOH A 104 1011 104 HOH HOH . 
K 5 HOH A 105 1012 105 HOH HOH . 
K 5 HOH A 106 1013 106 HOH HOH . 
K 5 HOH A 107 1014 107 HOH HOH . 
K 5 HOH A 108 1015 108 HOH HOH . 
K 5 HOH A 109 1016 109 HOH HOH . 
K 5 HOH A 110 1017 110 HOH HOH . 
K 5 HOH A 111 1018 111 HOH HOH . 
K 5 HOH A 112 1019 112 HOH HOH . 
K 5 HOH A 113 1020 113 HOH HOH . 
K 5 HOH A 114 1021 114 HOH HOH . 
K 5 HOH A 115 1022 115 HOH HOH . 
K 5 HOH A 116 1023 116 HOH HOH . 
K 5 HOH A 117 1024 117 HOH HOH . 
K 5 HOH A 118 1025 118 HOH HOH . 
K 5 HOH A 119 1026 119 HOH HOH . 
K 5 HOH A 120 1027 120 HOH HOH . 
K 5 HOH A 121 1028 121 HOH HOH . 
K 5 HOH A 122 1029 122 HOH HOH . 
K 5 HOH A 123 1030 123 HOH HOH . 
K 5 HOH A 124 1031 124 HOH HOH . 
K 5 HOH A 125 1032 125 HOH HOH . 
K 5 HOH A 126 1033 126 HOH HOH . 
K 5 HOH A 127 1034 127 HOH HOH . 
K 5 HOH A 128 1035 128 HOH HOH . 
K 5 HOH A 129 1036 129 HOH HOH . 
K 5 HOH A 130 1037 130 HOH HOH . 
K 5 HOH A 131 1038 131 HOH HOH . 
K 5 HOH A 132 1039 132 HOH HOH . 
K 5 HOH A 133 1040 133 HOH HOH . 
K 5 HOH A 134 1041 134 HOH HOH . 
K 5 HOH A 135 1042 135 HOH HOH . 
K 5 HOH A 136 1043 136 HOH HOH . 
K 5 HOH A 137 1044 137 HOH HOH . 
K 5 HOH A 138 1045 138 HOH HOH . 
K 5 HOH A 139 1046 139 HOH HOH . 
K 5 HOH A 140 1047 140 HOH HOH . 
K 5 HOH A 141 1048 141 HOH HOH . 
K 5 HOH A 142 1049 142 HOH HOH . 
K 5 HOH A 143 1050 143 HOH HOH . 
K 5 HOH A 144 1051 144 HOH HOH . 
K 5 HOH A 145 1052 145 HOH HOH . 
K 5 HOH A 146 1053 146 HOH HOH . 
K 5 HOH A 147 1054 147 HOH HOH . 
K 5 HOH A 148 1055 148 HOH HOH . 
K 5 HOH A 149 1056 149 HOH HOH . 
K 5 HOH A 150 1057 150 HOH HOH . 
K 5 HOH A 151 1058 151 HOH HOH . 
K 5 HOH A 152 1059 152 HOH HOH . 
K 5 HOH A 153 1060 153 HOH HOH . 
K 5 HOH A 154 1061 154 HOH HOH . 
K 5 HOH A 155 1062 155 HOH HOH . 
K 5 HOH A 156 1063 156 HOH HOH . 
K 5 HOH A 157 1064 157 HOH HOH . 
K 5 HOH A 158 1065 158 HOH HOH . 
K 5 HOH A 159 1066 159 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               20.856 
_atom_site.Cartn_y               46.999 
_atom_site.Cartn_z               -15.604 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        47.25 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           904 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#