data_1WDC
#
_model_server_result.job_id            X-D3BX9r8ZQ-BSrdLRLl6Q 
_model_server_result.datetime_utc      '2024-12-27 21:09:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1wdc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    1WDC 
#
_exptl.entry_id    1WDC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          114.5 
_cell.angle_gamma         90 
_cell.entry_id            1WDC 
_cell.length_a            52.65 
_cell.length_b            87.1 
_cell.length_c            55.5 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1WDC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OD1 ASP 28 B ASP 28 1_555 D MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc2 B OD1 ASP 30 B ASP 30 1_555 D MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
metalc ? metalc3 B OD2 ASP 30 B ASP 30 1_555 D MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.096 ? 
metalc ? metalc4 B OD1 ASP 32 B ASP 32 1_555 D MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? 
metalc ? metalc5 B O PHE 34 B PHE 34 1_555 D MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
metalc ? metalc6 B OD2 ASP 39 B ASP 39 1_555 D MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
metalc ? metalc7 D MG MG . B MG 502 1_555 G O HOH . B HOH 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? 
metalc ? metalc8 C OD1 ASP 19 C ASP 19 1_555 E CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? 
metalc ? metalc9 C O ASP 19 C ASP 19 1_555 E CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? 
metalc ? metalc10 C OD1 ASP 22 C ASP 22 1_555 E CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? 
metalc ? metalc11 C O GLY 23 C GLY 23 1_555 E CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? 
metalc ? metalc12 C OD1 ASP 25 C ASP 25 1_555 E CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? 
metalc ? metalc13 C O ALA 27 C ALA 27 1_555 E CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? 
metalc ? metalc14 E CA CA . C CA 501 1_555 H O HOH . C HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1WDC 
_atom_sites.fract_transf_matrix[1][1]    0.018993 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.008656 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011481 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019801 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 MG B 1 502 502 MG MG . 
E 5 CA C 1 501 501 CA CA . 
F 6 HOH A 1 2 2 HOH HOH . 
F 6 HOH A 2 6 6 HOH HOH . 
F 6 HOH A 3 8 8 HOH HOH . 
F 6 HOH A 4 10 10 HOH HOH . 
F 6 HOH A 5 13 13 HOH HOH . 
F 6 HOH A 6 14 14 HOH HOH . 
F 6 HOH A 7 16 16 HOH HOH . 
F 6 HOH A 8 48 48 HOH HOH . 
F 6 HOH A 9 54 54 HOH HOH . 
F 6 HOH A 10 76 76 HOH HOH . 
F 6 HOH A 11 82 82 HOH HOH . 
F 6 HOH A 12 92 92 HOH HOH . 
F 6 HOH A 13 99 99 HOH HOH . 
F 6 HOH A 14 100 100 HOH HOH . 
F 6 HOH A 15 104 104 HOH HOH . 
F 6 HOH A 16 117 117 HOH HOH . 
F 6 HOH A 17 127 127 HOH HOH . 
F 6 HOH A 18 129 129 HOH HOH . 
F 6 HOH A 19 131 131 HOH HOH . 
F 6 HOH A 20 134 134 HOH HOH . 
F 6 HOH A 21 139 139 HOH HOH . 
F 6 HOH A 22 148 148 HOH HOH . 
F 6 HOH A 23 149 149 HOH HOH . 
F 6 HOH A 24 152 152 HOH HOH . 
F 6 HOH A 25 158 158 HOH HOH . 
F 6 HOH A 26 159 159 HOH HOH . 
G 6 HOH B 1 503 5 HOH HOH . 
G 6 HOH B 2 504 12 HOH HOH . 
G 6 HOH B 3 505 15 HOH HOH . 
G 6 HOH B 4 506 17 HOH HOH . 
G 6 HOH B 5 507 18 HOH HOH . 
G 6 HOH B 6 508 19 HOH HOH . 
G 6 HOH B 7 509 20 HOH HOH . 
G 6 HOH B 8 510 21 HOH HOH . 
G 6 HOH B 9 511 22 HOH HOH . 
G 6 HOH B 10 512 23 HOH HOH . 
G 6 HOH B 11 513 24 HOH HOH . 
G 6 HOH B 12 514 25 HOH HOH . 
G 6 HOH B 13 515 26 HOH HOH . 
G 6 HOH B 14 516 27 HOH HOH . 
G 6 HOH B 15 517 28 HOH HOH . 
G 6 HOH B 16 518 46 HOH HOH . 
G 6 HOH B 17 519 47 HOH HOH . 
G 6 HOH B 18 520 49 HOH HOH . 
G 6 HOH B 19 521 51 HOH HOH . 
G 6 HOH B 20 522 55 HOH HOH . 
G 6 HOH B 21 523 57 HOH HOH . 
G 6 HOH B 22 524 58 HOH HOH . 
G 6 HOH B 23 525 59 HOH HOH . 
G 6 HOH B 24 526 63 HOH HOH . 
G 6 HOH B 25 527 64 HOH HOH . 
G 6 HOH B 26 528 66 HOH HOH . 
G 6 HOH B 27 529 67 HOH HOH . 
G 6 HOH B 28 530 69 HOH HOH . 
G 6 HOH B 29 531 72 HOH HOH . 
G 6 HOH B 30 532 73 HOH HOH . 
G 6 HOH B 31 533 74 HOH HOH . 
G 6 HOH B 32 534 75 HOH HOH . 
G 6 HOH B 33 535 77 HOH HOH . 
G 6 HOH B 34 536 78 HOH HOH . 
G 6 HOH B 35 537 80 HOH HOH . 
G 6 HOH B 36 538 83 HOH HOH . 
G 6 HOH B 37 539 84 HOH HOH . 
G 6 HOH B 38 540 88 HOH HOH . 
G 6 HOH B 39 541 89 HOH HOH . 
G 6 HOH B 40 542 91 HOH HOH . 
G 6 HOH B 41 543 93 HOH HOH . 
G 6 HOH B 42 544 96 HOH HOH . 
G 6 HOH B 43 545 106 HOH HOH . 
G 6 HOH B 44 546 107 HOH HOH . 
G 6 HOH B 45 547 110 HOH HOH . 
G 6 HOH B 46 548 111 HOH HOH . 
G 6 HOH B 47 549 112 HOH HOH . 
G 6 HOH B 48 550 113 HOH HOH . 
G 6 HOH B 49 551 114 HOH HOH . 
G 6 HOH B 50 552 115 HOH HOH . 
G 6 HOH B 51 553 116 HOH HOH . 
G 6 HOH B 52 554 120 HOH HOH . 
G 6 HOH B 53 555 121 HOH HOH . 
G 6 HOH B 54 556 124 HOH HOH . 
G 6 HOH B 55 557 125 HOH HOH . 
G 6 HOH B 56 558 126 HOH HOH . 
G 6 HOH B 57 559 130 HOH HOH . 
G 6 HOH B 58 560 137 HOH HOH . 
G 6 HOH B 59 561 141 HOH HOH . 
G 6 HOH B 60 562 142 HOH HOH . 
G 6 HOH B 61 563 146 HOH HOH . 
G 6 HOH B 62 564 147 HOH HOH . 
G 6 HOH B 63 565 150 HOH HOH . 
G 6 HOH B 64 566 153 HOH HOH . 
G 6 HOH B 65 567 154 HOH HOH . 
G 6 HOH B 66 568 155 HOH HOH . 
G 6 HOH B 67 569 164 HOH HOH . 
H 6 HOH C 1 502 1 HOH HOH . 
H 6 HOH C 2 503 3 HOH HOH . 
H 6 HOH C 3 504 4 HOH HOH . 
H 6 HOH C 4 505 7 HOH HOH . 
H 6 HOH C 5 506 9 HOH HOH . 
H 6 HOH C 6 507 11 HOH HOH . 
H 6 HOH C 7 508 29 HOH HOH . 
H 6 HOH C 8 509 30 HOH HOH . 
H 6 HOH C 9 510 31 HOH HOH . 
H 6 HOH C 10 511 32 HOH HOH . 
H 6 HOH C 11 512 33 HOH HOH . 
H 6 HOH C 12 513 34 HOH HOH . 
H 6 HOH C 13 514 35 HOH HOH . 
H 6 HOH C 14 515 36 HOH HOH . 
H 6 HOH C 15 516 37 HOH HOH . 
H 6 HOH C 16 517 38 HOH HOH . 
H 6 HOH C 17 518 39 HOH HOH . 
H 6 HOH C 18 519 40 HOH HOH . 
H 6 HOH C 19 520 41 HOH HOH . 
H 6 HOH C 20 521 42 HOH HOH . 
H 6 HOH C 21 522 43 HOH HOH . 
H 6 HOH C 22 523 44 HOH HOH . 
H 6 HOH C 23 524 45 HOH HOH . 
H 6 HOH C 24 525 50 HOH HOH . 
H 6 HOH C 25 526 52 HOH HOH . 
H 6 HOH C 26 527 53 HOH HOH . 
H 6 HOH C 27 528 56 HOH HOH . 
H 6 HOH C 28 529 60 HOH HOH . 
H 6 HOH C 29 530 61 HOH HOH . 
H 6 HOH C 30 531 62 HOH HOH . 
H 6 HOH C 31 532 65 HOH HOH . 
H 6 HOH C 32 533 68 HOH HOH . 
H 6 HOH C 33 534 70 HOH HOH . 
H 6 HOH C 34 535 71 HOH HOH . 
H 6 HOH C 35 536 79 HOH HOH . 
H 6 HOH C 36 537 81 HOH HOH . 
H 6 HOH C 37 538 85 HOH HOH . 
H 6 HOH C 38 539 86 HOH HOH . 
H 6 HOH C 39 540 87 HOH HOH . 
H 6 HOH C 40 541 90 HOH HOH . 
H 6 HOH C 41 542 94 HOH HOH . 
H 6 HOH C 42 543 95 HOH HOH . 
H 6 HOH C 43 544 97 HOH HOH . 
H 6 HOH C 44 545 98 HOH HOH . 
H 6 HOH C 45 546 101 HOH HOH . 
H 6 HOH C 46 547 102 HOH HOH . 
H 6 HOH C 47 548 103 HOH HOH . 
H 6 HOH C 48 549 105 HOH HOH . 
H 6 HOH C 49 550 108 HOH HOH . 
H 6 HOH C 50 551 109 HOH HOH . 
H 6 HOH C 51 552 118 HOH HOH . 
H 6 HOH C 52 553 119 HOH HOH . 
H 6 HOH C 53 554 122 HOH HOH . 
H 6 HOH C 54 555 123 HOH HOH . 
H 6 HOH C 55 556 128 HOH HOH . 
H 6 HOH C 56 557 132 HOH HOH . 
H 6 HOH C 57 558 133 HOH HOH . 
H 6 HOH C 58 559 135 HOH HOH . 
H 6 HOH C 59 560 136 HOH HOH . 
H 6 HOH C 60 561 138 HOH HOH . 
H 6 HOH C 61 562 140 HOH HOH . 
H 6 HOH C 62 563 143 HOH HOH . 
H 6 HOH C 63 564 144 HOH HOH . 
H 6 HOH C 64 565 145 HOH HOH . 
H 6 HOH C 65 566 151 HOH HOH . 
H 6 HOH C 66 567 156 HOH HOH . 
H 6 HOH C 67 568 157 HOH HOH . 
H 6 HOH C 68 569 160 HOH HOH . 
H 6 HOH C 69 570 161 HOH HOH . 
H 6 HOH C 70 571 162 HOH HOH . 
H 6 HOH C 71 572 163 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               36.772 
_atom_site.Cartn_y               42.405 
_atom_site.Cartn_z               36.477 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        25.62 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           502 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#