data_1WDI # _model_server_result.job_id UCqjzeJimoiIRcH-O8FiAA _model_server_result.datetime_utc '2025-03-05 03:30:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1wdi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1322}' # _entry.id 1WDI # _exptl.entry_id 1WDI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1WDI _cell.length_a 76.791 _cell.length_b 77.275 _cell.length_c 73.561 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WDI _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 1WDI _atom_sites.fract_transf_matrix[1][1] 0.013022 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012941 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013594 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 1322 1322 CIT CIT . C 3 HOH A 1 1323 1 HOH TIP . C 3 HOH A 2 1324 2 HOH TIP . C 3 HOH A 3 1325 3 HOH TIP . C 3 HOH A 4 1326 4 HOH TIP . C 3 HOH A 5 1327 5 HOH TIP . C 3 HOH A 6 1328 6 HOH TIP . C 3 HOH A 7 1329 7 HOH TIP . C 3 HOH A 8 1330 8 HOH TIP . C 3 HOH A 9 1331 9 HOH TIP . C 3 HOH A 10 1332 10 HOH TIP . C 3 HOH A 11 1333 11 HOH TIP . C 3 HOH A 12 1334 12 HOH TIP . C 3 HOH A 13 1335 13 HOH TIP . C 3 HOH A 14 1336 14 HOH TIP . C 3 HOH A 15 1337 15 HOH TIP . C 3 HOH A 16 1338 16 HOH TIP . C 3 HOH A 17 1339 17 HOH TIP . C 3 HOH A 18 1340 18 HOH TIP . C 3 HOH A 19 1341 19 HOH TIP . C 3 HOH A 20 1342 20 HOH TIP . C 3 HOH A 21 1343 21 HOH TIP . C 3 HOH A 22 1344 22 HOH TIP . C 3 HOH A 23 1345 23 HOH TIP . C 3 HOH A 24 1346 24 HOH TIP . C 3 HOH A 25 1347 25 HOH TIP . C 3 HOH A 26 1348 26 HOH TIP . C 3 HOH A 27 1349 27 HOH TIP . C 3 HOH A 28 1350 28 HOH TIP . C 3 HOH A 29 1351 29 HOH TIP . C 3 HOH A 30 1352 30 HOH TIP . C 3 HOH A 31 1353 31 HOH TIP . C 3 HOH A 32 1354 32 HOH TIP . C 3 HOH A 33 1355 33 HOH TIP . C 3 HOH A 34 1356 34 HOH TIP . C 3 HOH A 35 1357 35 HOH TIP . C 3 HOH A 36 1358 36 HOH TIP . C 3 HOH A 37 1359 37 HOH TIP . C 3 HOH A 38 1360 38 HOH TIP . C 3 HOH A 39 1361 39 HOH TIP . C 3 HOH A 40 1362 40 HOH TIP . C 3 HOH A 41 1363 41 HOH TIP . C 3 HOH A 42 1364 42 HOH TIP . C 3 HOH A 43 1365 43 HOH TIP . C 3 HOH A 44 1366 44 HOH TIP . C 3 HOH A 45 1367 45 HOH TIP . C 3 HOH A 46 1368 46 HOH TIP . C 3 HOH A 47 1369 47 HOH TIP . C 3 HOH A 48 1370 48 HOH TIP . C 3 HOH A 49 1371 49 HOH TIP . C 3 HOH A 50 1372 50 HOH TIP . C 3 HOH A 51 1373 51 HOH TIP . C 3 HOH A 52 1374 52 HOH TIP . C 3 HOH A 53 1375 53 HOH TIP . C 3 HOH A 54 1376 54 HOH TIP . C 3 HOH A 55 1377 55 HOH TIP . C 3 HOH A 56 1378 56 HOH TIP . C 3 HOH A 57 1379 57 HOH TIP . C 3 HOH A 58 1380 58 HOH TIP . C 3 HOH A 59 1381 59 HOH TIP . C 3 HOH A 60 1382 60 HOH TIP . C 3 HOH A 61 1383 61 HOH TIP . C 3 HOH A 62 1384 62 HOH TIP . C 3 HOH A 63 1385 63 HOH TIP . C 3 HOH A 64 1386 64 HOH TIP . C 3 HOH A 65 1387 65 HOH TIP . C 3 HOH A 66 1388 66 HOH TIP . C 3 HOH A 67 1389 67 HOH TIP . C 3 HOH A 68 1390 68 HOH TIP . C 3 HOH A 69 1391 69 HOH TIP . C 3 HOH A 70 1392 70 HOH TIP . C 3 HOH A 71 1393 71 HOH TIP . C 3 HOH A 72 1394 72 HOH TIP . C 3 HOH A 73 1395 73 HOH TIP . C 3 HOH A 74 1396 74 HOH TIP . C 3 HOH A 75 1397 75 HOH TIP . C 3 HOH A 76 1398 76 HOH TIP . C 3 HOH A 77 1399 77 HOH TIP . C 3 HOH A 78 1400 78 HOH TIP . C 3 HOH A 79 1401 79 HOH TIP . C 3 HOH A 80 1402 80 HOH TIP . C 3 HOH A 81 1403 81 HOH TIP . C 3 HOH A 82 1404 82 HOH TIP . C 3 HOH A 83 1405 83 HOH TIP . C 3 HOH A 84 1406 84 HOH TIP . C 3 HOH A 85 1407 85 HOH TIP . C 3 HOH A 86 1408 86 HOH TIP . C 3 HOH A 87 1409 87 HOH TIP . C 3 HOH A 88 1410 88 HOH TIP . C 3 HOH A 89 1411 89 HOH TIP . C 3 HOH A 90 1412 90 HOH TIP . C 3 HOH A 91 1413 91 HOH TIP . C 3 HOH A 92 1414 92 HOH TIP . C 3 HOH A 93 1415 93 HOH TIP . C 3 HOH A 94 1416 94 HOH TIP . C 3 HOH A 95 1417 95 HOH TIP . C 3 HOH A 96 1418 96 HOH TIP . C 3 HOH A 97 1419 97 HOH TIP . C 3 HOH A 98 1420 98 HOH TIP . C 3 HOH A 99 1421 99 HOH TIP . C 3 HOH A 100 1422 100 HOH TIP . C 3 HOH A 101 1423 101 HOH TIP . C 3 HOH A 102 1424 102 HOH TIP . C 3 HOH A 103 1425 103 HOH TIP . C 3 HOH A 104 1426 104 HOH TIP . C 3 HOH A 105 1427 105 HOH TIP . C 3 HOH A 106 1428 106 HOH TIP . C 3 HOH A 107 1429 107 HOH TIP . C 3 HOH A 108 1430 108 HOH TIP . C 3 HOH A 109 1431 109 HOH TIP . C 3 HOH A 110 1432 110 HOH TIP . C 3 HOH A 111 1433 111 HOH TIP . C 3 HOH A 112 1434 112 HOH TIP . C 3 HOH A 113 1435 113 HOH TIP . C 3 HOH A 114 1436 114 HOH TIP . C 3 HOH A 115 1437 115 HOH TIP . C 3 HOH A 116 1438 116 HOH TIP . C 3 HOH A 117 1439 117 HOH TIP . C 3 HOH A 118 1440 118 HOH TIP . C 3 HOH A 119 1441 119 HOH TIP . C 3 HOH A 120 1442 120 HOH TIP . C 3 HOH A 121 1443 121 HOH TIP . C 3 HOH A 122 1444 122 HOH TIP . C 3 HOH A 123 1445 123 HOH TIP . C 3 HOH A 124 1446 124 HOH TIP . C 3 HOH A 125 1447 125 HOH TIP . C 3 HOH A 126 1448 126 HOH TIP . C 3 HOH A 127 1449 127 HOH TIP . C 3 HOH A 128 1450 128 HOH TIP . C 3 HOH A 129 1451 129 HOH TIP . C 3 HOH A 130 1452 130 HOH TIP . C 3 HOH A 131 1453 131 HOH TIP . C 3 HOH A 132 1454 132 HOH TIP . C 3 HOH A 133 1455 133 HOH TIP . C 3 HOH A 134 1456 134 HOH TIP . C 3 HOH A 135 1457 135 HOH TIP . C 3 HOH A 136 1458 136 HOH TIP . C 3 HOH A 137 1459 137 HOH TIP . C 3 HOH A 138 1460 138 HOH TIP . C 3 HOH A 139 1461 139 HOH TIP . C 3 HOH A 140 1462 140 HOH TIP . C 3 HOH A 141 1463 141 HOH TIP . C 3 HOH A 142 1464 142 HOH TIP . C 3 HOH A 143 1465 143 HOH TIP . C 3 HOH A 144 1466 144 HOH TIP . C 3 HOH A 145 1467 145 HOH TIP . C 3 HOH A 146 1468 146 HOH TIP . C 3 HOH A 147 1469 147 HOH TIP . C 3 HOH A 148 1470 148 HOH TIP . C 3 HOH A 149 1471 149 HOH TIP . C 3 HOH A 150 1472 150 HOH TIP . C 3 HOH A 151 1473 151 HOH TIP . C 3 HOH A 152 1474 152 HOH TIP . C 3 HOH A 153 1475 153 HOH TIP . C 3 HOH A 154 1476 154 HOH TIP . C 3 HOH A 155 1477 155 HOH TIP . C 3 HOH A 156 1478 156 HOH TIP . C 3 HOH A 157 1479 157 HOH TIP . C 3 HOH A 158 1480 158 HOH TIP . C 3 HOH A 159 1481 159 HOH TIP . C 3 HOH A 160 1482 160 HOH TIP . C 3 HOH A 161 1483 161 HOH TIP . C 3 HOH A 162 1484 162 HOH TIP . C 3 HOH A 163 1485 163 HOH TIP . C 3 HOH A 164 1486 164 HOH TIP . C 3 HOH A 165 1487 165 HOH TIP . C 3 HOH A 166 1488 166 HOH TIP . C 3 HOH A 167 1489 167 HOH TIP . C 3 HOH A 168 1490 168 HOH TIP . C 3 HOH A 169 1491 169 HOH TIP . C 3 HOH A 170 1492 170 HOH TIP . C 3 HOH A 171 1493 171 HOH TIP . C 3 HOH A 172 1494 172 HOH TIP . C 3 HOH A 173 1495 173 HOH TIP . C 3 HOH A 174 1496 174 HOH TIP . C 3 HOH A 175 1497 175 HOH TIP . C 3 HOH A 176 1498 176 HOH TIP . C 3 HOH A 177 1499 177 HOH TIP . C 3 HOH A 178 1500 178 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . B 2 52.387 19.703 49.808 1 26.07 ? C1 CIT 1322 A 1 HETATM 2 O O1 CIT . . . B 2 52.7 18.517 49.483 1 26.4 ? O1 CIT 1322 A 1 HETATM 3 O O2 CIT . . . B 2 51.269 20.096 49.669 1 25.14 ? O2 CIT 1322 A 1 HETATM 4 C C2 CIT . . . B 2 53.494 20.545 50.386 1 24.05 ? C2 CIT 1322 A 1 HETATM 5 C C3 CIT . . . B 2 53.093 22.003 50.75 1 25.64 ? C3 CIT 1322 A 1 HETATM 6 O O7 CIT . . . B 2 52.028 22.033 51.723 1 24.55 ? O7 CIT 1322 A 1 HETATM 7 C C4 CIT . . . B 2 54.313 22.811 51.35 1 26.07 ? C4 CIT 1322 A 1 HETATM 8 C C5 CIT . . . B 2 54.644 22.305 52.801 1 29.96 ? C5 CIT 1322 A 1 HETATM 9 O O3 CIT . . . B 2 55.192 21.25 53.15 1 33.04 ? O3 CIT 1322 A 1 HETATM 10 O O4 CIT . . . B 2 54.242 23.211 53.646 1 35.39 ? O4 CIT 1322 A 1 HETATM 11 C C6 CIT . . . B 2 52.505 22.988 49.678 1 24.99 ? C6 CIT 1322 A 1 HETATM 12 O O5 CIT . . . B 2 51.61 23.822 49.786 1 25.63 ? O5 CIT 1322 A 1 HETATM 13 O O6 CIT . . . B 2 53.183 22.724 48.63 1 25.53 ? O6 CIT 1322 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #