data_1WDL # _model_server_result.job_id K3A0fBNYx_d5L0_MT8OigA _model_server_result.datetime_utc '2024-10-28 12:26:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1wdl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1001}' # _entry.id 1WDL # _exptl.entry_id 1WDL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1WDL _cell.length_a 95.664 _cell.length_b 118.413 _cell.length_c 191.356 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WDL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 I N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 387 n n PA O2A NAD sing 388 n n PA O5B NAD sing 389 n n PA O3 NAD sing 390 n n O2A HOA2 NAD sing 391 n n O5B C5B NAD sing 392 n n C5B C4B NAD sing 393 n n C5B H51A NAD sing 394 n n C5B H52A NAD sing 395 n n C4B O4B NAD sing 396 n n C4B C3B NAD sing 397 n n C4B H4B NAD sing 398 n n O4B C1B NAD sing 399 n n C3B O3B NAD sing 400 n n C3B C2B NAD sing 401 n n C3B H3B NAD sing 402 n n O3B HO3A NAD sing 403 n n C2B O2B NAD sing 404 n n C2B C1B NAD sing 405 n n C2B H2B NAD sing 406 n n O2B HO2A NAD sing 407 n n C1B N9A NAD sing 408 n n C1B H1B NAD sing 409 n n N9A C8A NAD sing 410 n y N9A C4A NAD sing 411 n y C8A N7A NAD doub 412 n y C8A H8A NAD sing 413 n n N7A C5A NAD sing 414 n y C5A C6A NAD sing 415 n y C5A C4A NAD doub 416 n y C6A N6A NAD sing 417 n n C6A N1A NAD doub 418 n y N6A H61A NAD sing 419 n n N6A H62A NAD sing 420 n n N1A C2A NAD sing 421 n y C2A N3A NAD doub 422 n y C2A H2A NAD sing 423 n n N3A C4A NAD sing 424 n y O3 PN NAD sing 425 n n PN O1N NAD doub 426 n n PN O2N NAD sing 427 n n PN O5D NAD sing 428 n n O5D C5D NAD sing 429 n n C5D C4D NAD sing 430 n n C5D H51N NAD sing 431 n n C5D H52N NAD sing 432 n n C4D O4D NAD sing 433 n n C4D C3D NAD sing 434 n n C4D H4D NAD sing 435 n n O4D C1D NAD sing 436 n n C3D O3D NAD sing 437 n n C3D C2D NAD sing 438 n n C3D H3D NAD sing 439 n n O3D HO3N NAD sing 440 n n C2D O2D NAD sing 441 n n C2D C1D NAD sing 442 n n C2D H2D NAD sing 443 n n O2D HO2N NAD sing 444 n n C1D N1N NAD sing 445 n n C1D H1D NAD sing 446 n n N1N C2N NAD sing 447 n y N1N C6N NAD doub 448 n y C2N C3N NAD doub 449 n y C2N H2N NAD sing 450 n n C3N C7N NAD sing 451 n n C3N C4N NAD sing 452 n y C7N O7N NAD doub 453 n n C7N N7N NAD sing 454 n n N7N H71N NAD sing 455 n n N7N H72N NAD sing 456 n n C4N C5N NAD doub 457 n y C4N H4N NAD sing 458 n n C5N C6N NAD sing 459 n y C5N H5N NAD sing 460 n n C6N H6N NAD sing 461 n n # _atom_sites.entry_id 1WDL _atom_sites.fract_transf_matrix[1][1] 0.010453 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008445 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005226 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAD A 1 1001 1001 NAD NAD . F 4 N8E A 1 1002 1002 N8E C8E . G 4 N8E A 1 1003 1003 N8E C8E . H 4 N8E A 1 1004 1004 N8E C8E . I 3 NAD B 1 2001 1001 NAD NAD . J 5 ACO C 1 3001 1001 ACO ACC . K 5 ACO D 1 4001 1001 ACO ACC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . E 3 37.355 79.171 49.916 1 116.45 ? PA NAD 1001 A 1 HETATM 2 O O1A NAD . . . E 3 37.518 77.8 49.366 1 116.45 ? O1A NAD 1001 A 1 HETATM 3 O O2A NAD . . . E 3 38.492 79.685 50.723 1 116.45 ? O2A NAD 1001 A 1 HETATM 4 O O5B NAD . . . E 3 37.145 80.191 48.705 1 116.45 ? O5B NAD 1001 A 1 HETATM 5 C C5B NAD . . . E 3 36.873 81.583 48.914 1 116.45 ? C5B NAD 1001 A 1 HETATM 6 C C4B NAD . . . E 3 36.285 82.176 47.648 1 57.14 ? C4B NAD 1001 A 1 HETATM 7 O O4B NAD . . . E 3 35.733 83.5 47.945 1 57.14 ? O4B NAD 1001 A 1 HETATM 8 C C3B NAD . . . E 3 37.335 82.413 46.553 1 57.14 ? C3B NAD 1001 A 1 HETATM 9 O O3B NAD . . . E 3 36.821 82.072 45.267 1 57.14 ? O3B NAD 1001 A 1 HETATM 10 C C2B NAD . . . E 3 37.629 83.91 46.656 1 57.14 ? C2B NAD 1001 A 1 HETATM 11 O O2B NAD . . . E 3 38.091 84.476 45.445 1 57.14 ? O2B NAD 1001 A 1 HETATM 12 C C1B NAD . . . E 3 36.244 84.442 47.02 1 57.14 ? C1B NAD 1001 A 1 HETATM 13 N N9A NAD . . . E 3 36.293 85.775 47.652 1 44.36 ? N9A NAD 1001 A 1 HETATM 14 C C8A NAD . . . E 3 37.001 86.179 48.769 1 44.36 ? C8A NAD 1001 A 1 HETATM 15 N N7A NAD . . . E 3 36.833 87.445 49.083 1 44.36 ? N7A NAD 1001 A 1 HETATM 16 C C5A NAD . . . E 3 35.958 87.914 48.115 1 44.36 ? C5A NAD 1001 A 1 HETATM 17 C C6A NAD . . . E 3 35.371 89.193 47.871 1 44.36 ? C6A NAD 1001 A 1 HETATM 18 N N6A NAD . . . E 3 35.6 90.266 48.633 1 44.36 ? N6A NAD 1001 A 1 HETATM 19 N N1A NAD . . . E 3 34.521 89.328 46.795 1 44.36 ? N1A NAD 1001 A 1 HETATM 20 C C2A NAD . . . E 3 34.276 88.247 46.011 1 44.36 ? C2A NAD 1001 A 1 HETATM 21 N N3A NAD . . . E 3 34.772 86.997 46.141 1 44.36 ? N3A NAD 1001 A 1 HETATM 22 C C4A NAD . . . E 3 35.612 86.895 47.221 1 44.36 ? C4A NAD 1001 A 1 HETATM 23 O O3 NAD . . . E 3 36.052 79.173 50.842 1 116.45 ? O3 NAD 1001 A 1 HETATM 24 P PN NAD . . . E 3 34.742 78.356 50.424 1 116.45 ? PN NAD 1001 A 1 HETATM 25 O O1N NAD . . . E 3 34.585 78.408 48.946 1 116.45 ? O1N NAD 1001 A 1 HETATM 26 O O2N NAD . . . E 3 34.877 77 51.018 1 116.45 ? O2N NAD 1001 A 1 HETATM 27 O O5D NAD . . . E 3 33.459 79.055 51.063 1 116.45 ? O5D NAD 1001 A 1 HETATM 28 C C5D NAD . . . E 3 33.396 79.34 52.459 1 116.45 ? C5D NAD 1001 A 1 HETATM 29 C C4D NAD . . . E 3 31.957 79.525 52.897 1 20.57 ? C4D NAD 1001 A 1 HETATM 30 O O4D NAD . . . E 3 31.331 78.209 52.992 1 20.57 ? O4D NAD 1001 A 1 HETATM 31 C C3D NAD . . . E 3 31.844 80.13 54.297 1 20.57 ? C3D NAD 1001 A 1 HETATM 32 O O3D NAD . . . E 3 30.724 81.008 54.381 1 20.57 ? O3D NAD 1001 A 1 HETATM 33 C C2D NAD . . . E 3 31.686 78.907 55.207 1 20.57 ? C2D NAD 1001 A 1 HETATM 34 O O2D NAD . . . E 3 30.989 79.191 56.403 1 20.57 ? O2D NAD 1001 A 1 HETATM 35 C C1D NAD . . . E 3 30.881 77.972 54.313 1 20.57 ? C1D NAD 1001 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 35 #