data_1WDL # _model_server_result.job_id 0PdKgHn9h8BfZ_rcQ5HzZw _model_server_result.datetime_utc '2024-11-22 12:13:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1wdl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1004}' # _entry.id 1WDL # _exptl.entry_id 1WDL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 350.491 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6,9,12,15-PENTAOXATRICOSAN-1-OL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1WDL _cell.length_a 95.664 _cell.length_b 118.413 _cell.length_c 191.356 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WDL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N # _chem_comp.formula 'C18 H38 O6' _chem_comp.formula_weight 350.491 _chem_comp.id N8E _chem_comp.mon_nstd_flag . _chem_comp.name 3,6,9,12,15-PENTAOXATRICOSAN-1-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'N-OCTYLPENTAOXYETHYLENE;PENTAETHYLENE GLYCOL MONOOCTYL ETHER;OCTYLPENTAGLYCOL N-OCTYLPENTAOXYETHYLENE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 N8E sing 326 n n C01 H011 N8E sing 327 n n C01 H012 N8E sing 328 n n C01 H013 N8E sing 329 n n C02 C03 N8E sing 330 n n C02 H021 N8E sing 331 n n C02 H022 N8E sing 332 n n C03 C04 N8E sing 333 n n C03 H031 N8E sing 334 n n C03 H032 N8E sing 335 n n C04 C05 N8E sing 336 n n C04 H041 N8E sing 337 n n C04 H042 N8E sing 338 n n C05 C06 N8E sing 339 n n C05 H051 N8E sing 340 n n C05 H052 N8E sing 341 n n C06 C07 N8E sing 342 n n C06 H061 N8E sing 343 n n C06 H062 N8E sing 344 n n C07 C08 N8E sing 345 n n C07 H071 N8E sing 346 n n C07 H072 N8E sing 347 n n C08 O09 N8E sing 348 n n C08 H081 N8E sing 349 n n C08 H082 N8E sing 350 n n O09 C10 N8E sing 351 n n C10 C11 N8E sing 352 n n C10 H101 N8E sing 353 n n C10 H102 N8E sing 354 n n C11 O12 N8E sing 355 n n C11 H111 N8E sing 356 n n C11 H112 N8E sing 357 n n O12 C13 N8E sing 358 n n C13 C14 N8E sing 359 n n C13 H131 N8E sing 360 n n C13 H132 N8E sing 361 n n C14 O15 N8E sing 362 n n C14 H141 N8E sing 363 n n C14 H142 N8E sing 364 n n O15 C16 N8E sing 365 n n C16 C17 N8E sing 366 n n C16 H161 N8E sing 367 n n C16 H162 N8E sing 368 n n C17 O18 N8E sing 369 n n C17 H171 N8E sing 370 n n C17 H172 N8E sing 371 n n O18 C19 N8E sing 372 n n C19 C20 N8E sing 373 n n C19 H191 N8E sing 374 n n C19 H192 N8E sing 375 n n C20 O21 N8E sing 376 n n C20 H201 N8E sing 377 n n C20 H202 N8E sing 378 n n O21 C22 N8E sing 379 n n C22 C23 N8E sing 380 n n C22 H221 N8E sing 381 n n C22 H222 N8E sing 382 n n C23 O24 N8E sing 383 n n C23 H231 N8E sing 384 n n C23 H232 N8E sing 385 n n O24 H24 N8E sing 386 n n # _atom_sites.entry_id 1WDL _atom_sites.fract_transf_matrix[1][1] 0.010453 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008445 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005226 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAD A 1 1001 1001 NAD NAD . F 4 N8E A 1 1002 1002 N8E C8E . G 4 N8E A 1 1003 1003 N8E C8E . H 4 N8E A 1 1004 1004 N8E C8E . I 3 NAD B 1 2001 1001 NAD NAD . J 5 ACO C 1 3001 1001 ACO ACC . K 5 ACO D 1 4001 1001 ACO ACC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 N8E . . . H 4 39.715 87.727 61.981 1 26.44 ? C01 N8E 1004 A 1 HETATM 2 C C02 N8E . . . H 4 39.595 89.094 61.343 1 31.5 ? C02 N8E 1004 A 1 HETATM 3 C C03 N8E . . . H 4 40.624 89.256 60.235 1 34.69 ? C03 N8E 1004 A 1 HETATM 4 C C04 N8E . . . H 4 40.473 90.616 59.572 1 36.49 ? C04 N8E 1004 A 1 HETATM 5 C C05 N8E . . . H 4 40.999 90.584 58.145 1 37.71 ? C05 N8E 1004 A 1 HETATM 6 C C06 N8E . . . H 4 40.882 91.963 57.508 1 39.43 ? C06 N8E 1004 A 1 HETATM 7 C C07 N8E . . . H 4 40.62 91.841 56.013 1 41.06 ? C07 N8E 1004 A 1 HETATM 8 C C08 N8E . . . H 4 40.174 93.176 55.435 1 45.13 ? C08 N8E 1004 A 1 HETATM 9 O O09 N8E . . . H 4 40.463 93.223 54.033 1 47.86 ? O09 N8E 1004 A 1 HETATM 10 C C10 N8E . . . H 4 39.54 94.051 53.316 1 50.93 ? C10 N8E 1004 A 1 HETATM 11 C C11 N8E . . . H 4 39.029 93.376 52.049 1 54.09 ? C11 N8E 1004 A 1 HETATM 12 O O12 N8E . . . H 4 39.883 93.685 50.941 1 58.04 ? O12 N8E 1004 A 1 HETATM 13 C C13 N8E . . . H 4 39.18 93.65 49.693 1 59.9 ? C13 N8E 1004 A 1 HETATM 14 C C14 N8E . . . H 4 40.082 93.251 48.531 1 62.21 ? C14 N8E 1004 A 1 HETATM 15 O O15 N8E . . . H 4 39.796 94.06 47.383 1 64.25 ? O15 N8E 1004 A 1 HETATM 16 C C16 N8E . . . H 4 39.541 93.272 46.213 1 65.6 ? C16 N8E 1004 A 1 HETATM 17 C C17 N8E . . . H 4 39.215 94.136 45.003 1 68.32 ? C17 N8E 1004 A 1 HETATM 18 O O18 N8E . . . H 4 38.942 93.313 43.861 1 70.5 ? O18 N8E 1004 A 1 HETATM 19 C C19 N8E . . . H 4 38.632 94.095 42.7 1 72.75 ? C19 N8E 1004 A 1 HETATM 20 C C20 N8E . . . H 4 38.348 93.231 41.479 1 74.69 ? C20 N8E 1004 A 1 HETATM 21 O O21 N8E . . . H 4 38.05 94.063 40.352 1 75.97 ? O21 N8E 1004 A 1 HETATM 22 C C22 N8E . . . H 4 37.777 93.301 39.17 1 77.11 ? C22 N8E 1004 A 1 HETATM 23 C C23 N8E . . . H 4 37.465 94.193 37.976 1 77.84 ? C23 N8E 1004 A 1 HETATM 24 O O24 N8E . . . H 4 37.198 93.394 36.818 1 77.11 ? O24 N8E 1004 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 24 #