data_1WDL # _model_server_result.job_id 6gkh8IxXgxGulqtQf9FjyA _model_server_result.datetime_utc '2024-10-28 12:31:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1wdl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":3001}' # _entry.id 1WDL # _exptl.entry_id 1WDL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 809.571 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1WDL _cell.length_a 95.664 _cell.length_b 118.413 _cell.length_c 191.356 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WDL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 J N N ? 5 K N N # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 1WDL _atom_sites.fract_transf_matrix[1][1] 0.010453 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008445 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005226 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAD A 1 1001 1001 NAD NAD . F 4 N8E A 1 1002 1002 N8E C8E . G 4 N8E A 1 1003 1003 N8E C8E . H 4 N8E A 1 1004 1004 N8E C8E . I 3 NAD B 1 2001 1001 NAD NAD . J 5 ACO C 1 3001 1001 ACO ACC . K 5 ACO D 1 4001 1001 ACO ACC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . J 5 42.553 39.343 51.838 1 67.18 ? N1A ACO 3001 C 1 HETATM 2 C C2A ACO . . . J 5 42.973 40.6 52.132 1 67.18 ? C2A ACO 3001 C 1 HETATM 3 N N3A ACO . . . J 5 42.538 41.764 51.605 1 67.18 ? N3A ACO 3001 C 1 HETATM 4 C C4A ACO . . . J 5 41.558 41.562 50.667 1 67.18 ? C4A ACO 3001 C 1 HETATM 5 C C5A ACO . . . J 5 41.022 40.336 50.264 1 67.18 ? C5A ACO 3001 C 1 HETATM 6 C C6A ACO . . . J 5 41.568 39.173 50.892 1 67.18 ? C6A ACO 3001 C 1 HETATM 7 N N6A ACO . . . J 5 41.166 37.931 50.616 1 67.18 ? N6A ACO 3001 C 1 HETATM 8 N N7A ACO . . . J 5 40.046 40.519 49.295 1 67.18 ? N7A ACO 3001 C 1 HETATM 9 C C8A ACO . . . J 5 40.003 41.824 49.135 1 67.18 ? C8A ACO 3001 C 1 HETATM 10 N N9A ACO . . . J 5 40.891 42.518 49.936 1 67.18 ? N9A ACO 3001 C 1 HETATM 11 C C1B ACO . . . J 5 41.116 43.972 50.02 1 128.78 ? C1B ACO 3001 C 1 HETATM 12 C C2B ACO . . . J 5 41.734 44.54 48.746 1 128.78 ? C2B ACO 3001 C 1 HETATM 13 O O2B ACO . . . J 5 43.135 44.351 48.732 1 128.78 ? O2B ACO 3001 C 1 HETATM 14 C C3B ACO . . . J 5 41.322 46.008 48.862 1 128.78 ? C3B ACO 3001 C 1 HETATM 15 O O3B ACO . . . J 5 42.234 46.744 49.681 1 128.78 ? O3B ACO 3001 C 1 HETATM 16 P P3B ACO . . . J 5 43.079 47.959 49.063 1 128.78 ? P3B ACO 3001 C 1 HETATM 17 O O7A ACO . . . J 5 43.963 47.396 48.008 1 128.78 ? O7A ACO 3001 C 1 HETATM 18 O O8A ACO . . . J 5 42.109 48.934 48.499 1 128.78 ? O8A ACO 3001 C 1 HETATM 19 O O9A ACO . . . J 5 43.869 48.557 50.17 1 128.78 ? O9A ACO 3001 C 1 HETATM 20 C C4B ACO . . . J 5 39.933 45.941 49.508 1 128.78 ? C4B ACO 3001 C 1 HETATM 21 O O4B ACO . . . J 5 39.87 44.631 50.151 1 128.78 ? O4B ACO 3001 C 1 HETATM 22 C C5B ACO . . . J 5 38.806 46.04 48.505 1 80.61 ? C5B ACO 3001 C 1 HETATM 23 O O5B ACO . . . J 5 37.795 46.915 49.004 1 80.61 ? O5B ACO 3001 C 1 HETATM 24 P P1A ACO . . . J 5 36.262 46.707 48.625 1 80.61 ? P1A ACO 3001 C 1 HETATM 25 O O1A ACO . . . J 5 35.838 45.35 49.06 1 80.61 ? O1A ACO 3001 C 1 HETATM 26 O O2A ACO . . . J 5 35.515 47.844 49.219 1 80.61 ? O2A ACO 3001 C 1 HETATM 27 O O3A ACO . . . J 5 36.095 46.786 47.038 1 80.61 ? O3A ACO 3001 C 1 HETATM 28 P P2A ACO . . . J 5 34.764 46.264 46.332 1 80.61 ? P2A ACO 3001 C 1 HETATM 29 O O4A ACO . . . J 5 33.593 46.655 47.166 1 80.61 ? O4A ACO 3001 C 1 HETATM 30 O O5A ACO . . . J 5 34.774 46.794 44.944 1 80.61 ? O5A ACO 3001 C 1 HETATM 31 O O6A ACO . . . J 5 34.808 44.666 46.249 1 80.61 ? O6A ACO 3001 C 1 HETATM 32 C CBP ACO . . . J 5 33.128 43.047 45.467 1 82.09 ? CBP ACO 3001 C 1 HETATM 33 C CCP ACO . . . J 5 33.707 43.846 46.669 1 82.09 ? CCP ACO 3001 C 1 HETATM 34 C CDP ACO . . . J 5 34.255 42.244 44.792 1 82.09 ? CDP ACO 3001 C 1 HETATM 35 C CEP ACO . . . J 5 32.532 44.038 44.444 1 82.09 ? CEP ACO 3001 C 1 HETATM 36 C CAP ACO . . . J 5 32.005 42.049 45.989 1 82.09 ? CAP ACO 3001 C 1 HETATM 37 O OAP ACO . . . J 5 31.042 42.783 46.77 1 82.09 ? OAP ACO 3001 C 1 HETATM 38 C C9P ACO . . . J 5 31.284 41.364 44.799 1 82.09 ? C9P ACO 3001 C 1 HETATM 39 O O9P ACO . . . J 5 31.71 40.306 44.325 1 82.09 ? O9P ACO 3001 C 1 HETATM 40 N N8P ACO . . . J 5 30.116 41.889 44.429 1 82.09 ? N8P ACO 3001 C 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 40 #