data_1WDL # _model_server_result.job_id WEkTQPjwgthnIAWS4ZuSHw _model_server_result.datetime_utc '2024-10-28 12:16:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1wdl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":4001}' # _entry.id 1WDL # _exptl.entry_id 1WDL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 809.571 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1WDL _cell.length_a 95.664 _cell.length_b 118.413 _cell.length_c 191.356 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WDL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 J N N ? 5 K N N # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 1WDL _atom_sites.fract_transf_matrix[1][1] 0.010453 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008445 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005226 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAD A 1 1001 1001 NAD NAD . F 4 N8E A 1 1002 1002 N8E C8E . G 4 N8E A 1 1003 1003 N8E C8E . H 4 N8E A 1 1004 1004 N8E C8E . I 3 NAD B 1 2001 1001 NAD NAD . J 5 ACO C 1 3001 1001 ACO ACC . K 5 ACO D 1 4001 1001 ACO ACC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . K 5 5.571 56.839 3.732 1 62.66 ? N1A ACO 4001 D 1 HETATM 2 C C2A ACO . . . K 5 5.583 58.193 3.822 1 62.66 ? C2A ACO 4001 D 1 HETATM 3 N N3A ACO . . . K 5 6.355 58.966 4.616 1 62.66 ? N3A ACO 4001 D 1 HETATM 4 C C4A ACO . . . K 5 7.2 58.212 5.391 1 62.66 ? C4A ACO 4001 D 1 HETATM 5 C C5A ACO . . . K 5 7.3 56.816 5.408 1 62.66 ? C5A ACO 4001 D 1 HETATM 6 C C6A ACO . . . K 5 6.43 56.109 4.524 1 62.66 ? C6A ACO 4001 D 1 HETATM 7 N N6A ACO . . . K 5 6.407 54.778 4.424 1 62.66 ? N6A ACO 4001 D 1 HETATM 8 N N7A ACO . . . K 5 8.262 56.401 6.316 1 62.66 ? N7A ACO 4001 D 1 HETATM 9 C C8A ACO . . . K 5 8.719 57.522 6.826 1 62.66 ? C8A ACO 4001 D 1 HETATM 10 N N9A ACO . . . K 5 8.124 58.661 6.315 1 62.66 ? N9A ACO 4001 D 1 HETATM 11 C C1B ACO . . . K 5 8.396 60.07 6.661 1 133.16 ? C1B ACO 4001 D 1 HETATM 12 C C2B ACO . . . K 5 7.638 60.516 7.911 1 133.16 ? C2B ACO 4001 D 1 HETATM 13 O O2B ACO . . . K 5 6.337 60.966 7.582 1 133.16 ? O2B ACO 4001 D 1 HETATM 14 C C3B ACO . . . K 5 8.546 61.634 8.435 1 133.16 ? C3B ACO 4001 D 1 HETATM 15 O O3B ACO . . . K 5 8.257 62.888 7.811 1 133.16 ? O3B ACO 4001 D 1 HETATM 16 P P3B ACO . . . K 5 7.961 64.186 8.706 1 133.16 ? P3B ACO 4001 D 1 HETATM 17 O O7A ACO . . . K 5 6.752 63.898 9.521 1 133.16 ? O7A ACO 4001 D 1 HETATM 18 O O8A ACO . . . K 5 9.154 64.416 9.563 1 133.16 ? O8A ACO 4001 D 1 HETATM 19 O O9A ACO . . . K 5 7.732 65.322 7.777 1 133.16 ? O9A ACO 4001 D 1 HETATM 20 C C4B ACO . . . K 5 9.955 61.157 8.075 1 133.16 ? C4B ACO 4001 D 1 HETATM 21 O O4B ACO . . . K 5 9.773 60.203 6.983 1 133.16 ? O4B ACO 4001 D 1 HETATM 22 C C5B ACO . . . K 5 10.654 60.45 9.22 1 125.12 ? C5B ACO 4001 D 1 HETATM 23 O O5B ACO . . . K 5 12.07 60.571 9.079 1 125.12 ? O5B ACO 4001 D 1 HETATM 24 P P1A ACO . . . K 5 13.058 60.314 10.309 1 125.12 ? P1A ACO 4001 D 1 HETATM 25 O O1A ACO . . . K 5 12.787 61.321 11.368 1 125.12 ? O1A ACO 4001 D 1 HETATM 26 O O2A ACO . . . K 5 12.89 58.891 10.705 1 125.12 ? O2A ACO 4001 D 1 HETATM 27 O O3A ACO . . . K 5 14.566 60.527 9.822 1 125.12 ? O3A ACO 4001 D 1 HETATM 28 P P2A ACO . . . K 5 15.794 59.975 10.683 1 125.12 ? P2A ACO 4001 D 1 HETATM 29 O O4A ACO . . . K 5 17.065 60.409 10.045 1 125.12 ? O4A ACO 4001 D 1 HETATM 30 O O5A ACO . . . K 5 15.582 60.431 12.081 1 125.12 ? O5A ACO 4001 D 1 HETATM 31 O O6A ACO . . . K 5 15.771 58.38 10.675 1 125.12 ? O6A ACO 4001 D 1 HETATM 32 C CBP ACO . . . K 5 16.812 56.455 9.559 1 68.71 ? CBP ACO 4001 D 1 HETATM 33 C CCP ACO . . . K 5 15.824 57.647 9.446 1 68.71 ? CCP ACO 4001 D 1 HETATM 34 C CDP ACO . . . K 5 18.217 56.988 9.899 1 68.71 ? CDP ACO 4001 D 1 HETATM 35 C CEP ACO . . . K 5 16.867 55.726 8.203 1 68.71 ? CEP ACO 4001 D 1 HETATM 36 C CAP ACO . . . K 5 16.318 55.46 10.702 1 68.71 ? CAP ACO 4001 D 1 HETATM 37 O OAP ACO . . . K 5 14.981 55.019 10.399 1 68.71 ? OAP ACO 4001 D 1 HETATM 38 C C9P ACO . . . K 5 17.246 54.224 10.799 1 68.71 ? C9P ACO 4001 D 1 HETATM 39 O O9P ACO . . . K 5 18.24 54.24 11.537 1 68.71 ? O9P ACO 4001 D 1 HETATM 40 N N8P ACO . . . K 5 16.901 53.162 10.052 1 68.71 ? N8P ACO 4001 D 1 HETATM 41 C C7P ACO . . . K 5 17.683 51.934 10.049 1 68.71 ? C7P ACO 4001 D 1 HETATM 42 C C6P ACO . . . K 5 16.881 50.748 10.562 1 68.71 ? C6P ACO 4001 D 1 HETATM 43 C C5P ACO . . . K 5 17.765 49.652 11.12 1 68.71 ? C5P ACO 4001 D 1 HETATM 44 O O5P ACO . . . K 5 17.884 49.505 12.342 1 68.71 ? O5P ACO 4001 D 1 HETATM 45 N N4P ACO . . . K 5 18.39 48.883 10.214 1 68.71 ? N4P ACO 4001 D 1 HETATM 46 C C3P ACO . . . K 5 19.279 47.79 10.596 1 68.71 ? C3P ACO 4001 D 1 HETATM 47 C C2P ACO . . . K 5 19.3 46.644 9.568 1 68.71 ? C2P ACO 4001 D 1 HETATM 48 S S1P ACO . . . K 5 18.155 45.246 10.064 1 68.71 ? S1P ACO 4001 D 1 HETATM 49 C C ACO . . . K 5 18.733 43.597 9.57 1 62.66 ? C ACO 4001 D 1 HETATM 50 O O ACO . . . K 5 18.041 42.702 9.873 1 62.66 ? O ACO 4001 D 1 HETATM 51 C CH3 ACO . . . K 5 20.067 43.359 8.785 1 62.66 ? CH3 ACO 4001 D 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 234 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 51 #