data_1WDT # _model_server_result.job_id BGoa9gYl5QZtfDUh6TR6PQ _model_server_result.datetime_utc '2025-03-05 03:36:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1wdt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 1WDT # _exptl.entry_id 1WDT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.33 _cell.angle_gamma 90 _cell.entry_id 1WDT _cell.length_a 158.372 _cell.length_b 56.293 _cell.length_c 91.825 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WDT _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 23 A THR 23 1_555 B MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc2 A OG1 THR 61 A THR 61 1_555 B MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc3 C O2G GTP . A GTP 700 1_555 B MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc4 C O2B GTP . A GTP 700 1_555 B MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc5 B MG MG . A MG 701 1_555 D O HOH . A HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc6 B MG MG . A MG 701 1_555 D O HOH . A HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1WDT _atom_sites.fract_transf_matrix[1][1] 0.006314 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001613 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017764 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01124 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 701 701 MG MG . C 3 GTP A 1 700 700 GTP GTP . D 4 HOH A 1 702 1 HOH HOH . D 4 HOH A 2 703 2 HOH HOH . D 4 HOH A 3 704 3 HOH HOH . D 4 HOH A 4 705 4 HOH HOH . D 4 HOH A 5 706 5 HOH HOH . D 4 HOH A 6 707 6 HOH HOH . D 4 HOH A 7 708 7 HOH HOH . D 4 HOH A 8 709 8 HOH HOH . D 4 HOH A 9 710 9 HOH HOH . D 4 HOH A 10 711 10 HOH HOH . D 4 HOH A 11 712 11 HOH HOH . D 4 HOH A 12 713 12 HOH HOH . D 4 HOH A 13 714 13 HOH HOH . D 4 HOH A 14 715 14 HOH HOH . D 4 HOH A 15 716 15 HOH HOH . D 4 HOH A 16 717 16 HOH HOH . D 4 HOH A 17 718 17 HOH HOH . D 4 HOH A 18 719 18 HOH HOH . D 4 HOH A 19 720 19 HOH HOH . D 4 HOH A 20 721 20 HOH HOH . D 4 HOH A 21 722 21 HOH HOH . D 4 HOH A 22 723 22 HOH HOH . D 4 HOH A 23 724 23 HOH HOH . D 4 HOH A 24 725 24 HOH HOH . D 4 HOH A 25 726 25 HOH HOH . D 4 HOH A 26 727 26 HOH HOH . D 4 HOH A 27 728 27 HOH HOH . D 4 HOH A 28 729 28 HOH HOH . D 4 HOH A 29 730 29 HOH HOH . D 4 HOH A 30 731 30 HOH HOH . D 4 HOH A 31 732 31 HOH HOH . D 4 HOH A 32 733 32 HOH HOH . D 4 HOH A 33 734 33 HOH HOH . D 4 HOH A 34 735 34 HOH HOH . D 4 HOH A 35 736 35 HOH HOH . D 4 HOH A 36 737 36 HOH HOH . D 4 HOH A 37 738 37 HOH HOH . D 4 HOH A 38 739 38 HOH HOH . D 4 HOH A 39 740 39 HOH HOH . D 4 HOH A 40 741 40 HOH HOH . D 4 HOH A 41 742 41 HOH HOH . D 4 HOH A 42 743 42 HOH HOH . D 4 HOH A 43 744 43 HOH HOH . D 4 HOH A 44 745 44 HOH HOH . D 4 HOH A 45 746 45 HOH HOH . D 4 HOH A 46 747 46 HOH HOH . D 4 HOH A 47 748 47 HOH HOH . D 4 HOH A 48 749 48 HOH HOH . D 4 HOH A 49 750 49 HOH HOH . D 4 HOH A 50 751 50 HOH HOH . D 4 HOH A 51 752 51 HOH HOH . D 4 HOH A 52 753 52 HOH HOH . D 4 HOH A 53 754 53 HOH HOH . D 4 HOH A 54 755 54 HOH HOH . D 4 HOH A 55 756 55 HOH HOH . D 4 HOH A 56 757 56 HOH HOH . D 4 HOH A 57 758 57 HOH HOH . D 4 HOH A 58 759 58 HOH HOH . D 4 HOH A 59 760 59 HOH HOH . D 4 HOH A 60 761 60 HOH HOH . D 4 HOH A 61 762 61 HOH HOH . D 4 HOH A 62 763 62 HOH HOH . D 4 HOH A 63 764 63 HOH HOH . D 4 HOH A 64 765 64 HOH HOH . D 4 HOH A 65 766 65 HOH HOH . D 4 HOH A 66 767 66 HOH HOH . D 4 HOH A 67 768 67 HOH HOH . D 4 HOH A 68 769 68 HOH HOH . D 4 HOH A 69 770 69 HOH HOH . D 4 HOH A 70 771 70 HOH HOH . D 4 HOH A 71 772 71 HOH HOH . D 4 HOH A 72 773 72 HOH HOH . D 4 HOH A 73 774 73 HOH HOH . D 4 HOH A 74 775 74 HOH HOH . D 4 HOH A 75 776 75 HOH HOH . D 4 HOH A 76 777 76 HOH HOH . D 4 HOH A 77 778 77 HOH HOH . D 4 HOH A 78 779 78 HOH HOH . D 4 HOH A 79 780 79 HOH HOH . D 4 HOH A 80 781 80 HOH HOH . D 4 HOH A 81 782 81 HOH HOH . D 4 HOH A 82 783 82 HOH HOH . D 4 HOH A 83 784 84 HOH HOH . D 4 HOH A 84 785 85 HOH HOH . D 4 HOH A 85 786 86 HOH HOH . D 4 HOH A 86 787 87 HOH HOH . D 4 HOH A 87 788 88 HOH HOH . D 4 HOH A 88 789 89 HOH HOH . D 4 HOH A 89 790 90 HOH HOH . D 4 HOH A 90 791 91 HOH HOH . D 4 HOH A 91 792 92 HOH HOH . D 4 HOH A 92 793 93 HOH HOH . D 4 HOH A 93 794 94 HOH HOH . D 4 HOH A 94 795 95 HOH HOH . D 4 HOH A 95 796 97 HOH HOH . D 4 HOH A 96 797 98 HOH HOH . D 4 HOH A 97 798 99 HOH HOH . D 4 HOH A 98 799 100 HOH HOH . D 4 HOH A 99 800 101 HOH HOH . D 4 HOH A 100 801 102 HOH HOH . D 4 HOH A 101 802 103 HOH HOH . D 4 HOH A 102 803 104 HOH HOH . D 4 HOH A 103 804 105 HOH HOH . D 4 HOH A 104 805 106 HOH HOH . D 4 HOH A 105 806 107 HOH HOH . D 4 HOH A 106 807 108 HOH HOH . D 4 HOH A 107 808 109 HOH HOH . D 4 HOH A 108 809 110 HOH HOH . D 4 HOH A 109 810 111 HOH HOH . D 4 HOH A 110 811 112 HOH HOH . D 4 HOH A 111 812 113 HOH HOH . D 4 HOH A 112 813 114 HOH HOH . D 4 HOH A 113 814 115 HOH HOH . D 4 HOH A 114 815 117 HOH HOH . D 4 HOH A 115 816 118 HOH HOH . D 4 HOH A 116 817 119 HOH HOH . D 4 HOH A 117 818 120 HOH HOH . D 4 HOH A 118 819 121 HOH HOH . D 4 HOH A 119 820 122 HOH HOH . D 4 HOH A 120 821 123 HOH HOH . D 4 HOH A 121 822 124 HOH HOH . D 4 HOH A 122 823 125 HOH HOH . D 4 HOH A 123 824 126 HOH HOH . D 4 HOH A 124 825 127 HOH HOH . D 4 HOH A 125 826 128 HOH HOH . D 4 HOH A 126 827 129 HOH HOH . D 4 HOH A 127 828 130 HOH HOH . D 4 HOH A 128 829 131 HOH HOH . D 4 HOH A 129 830 132 HOH HOH . D 4 HOH A 130 831 133 HOH HOH . D 4 HOH A 131 832 134 HOH HOH . D 4 HOH A 132 833 135 HOH HOH . D 4 HOH A 133 834 136 HOH HOH . D 4 HOH A 134 835 137 HOH HOH . D 4 HOH A 135 836 138 HOH HOH . D 4 HOH A 136 837 139 HOH HOH . D 4 HOH A 137 838 140 HOH HOH . D 4 HOH A 138 839 141 HOH HOH . D 4 HOH A 139 840 142 HOH HOH . D 4 HOH A 140 841 143 HOH HOH . D 4 HOH A 141 842 144 HOH HOH . D 4 HOH A 142 843 146 HOH HOH . D 4 HOH A 143 844 147 HOH HOH . D 4 HOH A 144 845 148 HOH HOH . D 4 HOH A 145 846 149 HOH HOH . D 4 HOH A 146 847 150 HOH HOH . D 4 HOH A 147 848 151 HOH HOH . D 4 HOH A 148 849 152 HOH HOH . D 4 HOH A 149 850 153 HOH HOH . D 4 HOH A 150 851 154 HOH HOH . D 4 HOH A 151 852 155 HOH HOH . D 4 HOH A 152 853 156 HOH HOH . D 4 HOH A 153 854 157 HOH HOH . D 4 HOH A 154 855 158 HOH HOH . D 4 HOH A 155 856 159 HOH HOH . D 4 HOH A 156 857 160 HOH HOH . D 4 HOH A 157 858 161 HOH HOH . D 4 HOH A 158 859 162 HOH HOH . D 4 HOH A 159 860 163 HOH HOH . D 4 HOH A 160 861 164 HOH HOH . D 4 HOH A 161 862 165 HOH HOH . D 4 HOH A 162 863 166 HOH HOH . D 4 HOH A 163 864 167 HOH HOH . D 4 HOH A 164 865 168 HOH HOH . D 4 HOH A 165 866 169 HOH HOH . D 4 HOH A 166 867 170 HOH HOH . D 4 HOH A 167 868 171 HOH HOH . D 4 HOH A 168 869 172 HOH HOH . D 4 HOH A 169 870 175 HOH HOH . D 4 HOH A 170 871 176 HOH HOH . D 4 HOH A 171 872 177 HOH HOH . D 4 HOH A 172 873 178 HOH HOH . D 4 HOH A 173 874 179 HOH HOH . D 4 HOH A 174 875 180 HOH HOH . D 4 HOH A 175 876 181 HOH HOH . D 4 HOH A 176 877 182 HOH HOH . D 4 HOH A 177 878 183 HOH HOH . D 4 HOH A 178 879 184 HOH HOH . D 4 HOH A 179 880 185 HOH HOH . D 4 HOH A 180 881 186 HOH HOH . D 4 HOH A 181 882 187 HOH HOH . D 4 HOH A 182 883 188 HOH HOH . D 4 HOH A 183 884 189 HOH HOH . D 4 HOH A 184 885 190 HOH HOH . D 4 HOH A 185 886 192 HOH HOH . D 4 HOH A 186 887 193 HOH HOH . D 4 HOH A 187 888 194 HOH HOH . D 4 HOH A 188 889 195 HOH HOH . D 4 HOH A 189 890 196 HOH HOH . D 4 HOH A 190 891 197 HOH HOH . D 4 HOH A 191 892 199 HOH HOH . D 4 HOH A 192 893 200 HOH HOH . D 4 HOH A 193 894 201 HOH HOH . D 4 HOH A 194 895 202 HOH HOH . D 4 HOH A 195 896 203 HOH HOH . D 4 HOH A 196 897 204 HOH HOH . D 4 HOH A 197 898 206 HOH HOH . D 4 HOH A 198 899 207 HOH HOH . D 4 HOH A 199 900 208 HOH HOH . D 4 HOH A 200 901 209 HOH HOH . D 4 HOH A 201 902 210 HOH HOH . D 4 HOH A 202 903 211 HOH HOH . D 4 HOH A 203 904 212 HOH HOH . D 4 HOH A 204 905 213 HOH HOH . D 4 HOH A 205 906 214 HOH HOH . D 4 HOH A 206 907 215 HOH HOH . D 4 HOH A 207 908 216 HOH HOH . D 4 HOH A 208 909 217 HOH HOH . D 4 HOH A 209 910 218 HOH HOH . D 4 HOH A 210 911 219 HOH HOH . D 4 HOH A 211 912 220 HOH HOH . D 4 HOH A 212 913 221 HOH HOH . D 4 HOH A 213 914 222 HOH HOH . D 4 HOH A 214 915 223 HOH HOH . D 4 HOH A 215 916 224 HOH HOH . D 4 HOH A 216 917 225 HOH HOH . D 4 HOH A 217 918 226 HOH HOH . D 4 HOH A 218 919 227 HOH HOH . D 4 HOH A 219 920 228 HOH HOH . D 4 HOH A 220 921 229 HOH HOH . D 4 HOH A 221 922 230 HOH HOH . D 4 HOH A 222 923 231 HOH HOH . D 4 HOH A 223 924 232 HOH HOH . D 4 HOH A 224 925 233 HOH HOH . D 4 HOH A 225 926 234 HOH HOH . D 4 HOH A 226 927 235 HOH HOH . D 4 HOH A 227 928 236 HOH HOH . D 4 HOH A 228 929 237 HOH HOH . D 4 HOH A 229 930 238 HOH HOH . D 4 HOH A 230 931 239 HOH HOH . D 4 HOH A 231 932 240 HOH HOH . D 4 HOH A 232 933 241 HOH HOH . D 4 HOH A 233 934 242 HOH HOH . D 4 HOH A 234 935 244 HOH HOH . D 4 HOH A 235 936 245 HOH HOH . D 4 HOH A 236 937 246 HOH HOH . D 4 HOH A 237 938 247 HOH HOH . D 4 HOH A 238 939 248 HOH HOH . D 4 HOH A 239 940 249 HOH HOH . D 4 HOH A 240 941 250 HOH HOH . D 4 HOH A 241 942 251 HOH HOH . D 4 HOH A 242 943 252 HOH HOH . D 4 HOH A 243 944 253 HOH HOH . D 4 HOH A 244 945 254 HOH HOH . D 4 HOH A 245 946 255 HOH HOH . D 4 HOH A 246 947 256 HOH HOH . D 4 HOH A 247 948 257 HOH HOH . D 4 HOH A 248 949 258 HOH HOH . D 4 HOH A 249 950 259 HOH HOH . D 4 HOH A 250 951 260 HOH HOH . D 4 HOH A 251 952 261 HOH HOH . D 4 HOH A 252 953 262 HOH HOH . D 4 HOH A 253 954 263 HOH HOH . D 4 HOH A 254 955 264 HOH HOH . D 4 HOH A 255 956 265 HOH HOH . D 4 HOH A 256 957 266 HOH HOH . D 4 HOH A 257 958 267 HOH HOH . D 4 HOH A 258 959 268 HOH HOH . D 4 HOH A 259 960 269 HOH HOH . D 4 HOH A 260 961 270 HOH HOH . D 4 HOH A 261 962 271 HOH HOH . D 4 HOH A 262 963 272 HOH HOH . D 4 HOH A 263 964 273 HOH HOH . D 4 HOH A 264 965 274 HOH HOH . D 4 HOH A 265 966 275 HOH HOH . D 4 HOH A 266 967 276 HOH HOH . D 4 HOH A 267 968 277 HOH HOH . D 4 HOH A 268 969 278 HOH HOH . D 4 HOH A 269 970 279 HOH HOH . D 4 HOH A 270 971 280 HOH HOH . D 4 HOH A 271 972 281 HOH HOH . D 4 HOH A 272 973 282 HOH HOH . D 4 HOH A 273 974 283 HOH HOH . D 4 HOH A 274 975 284 HOH HOH . D 4 HOH A 275 976 285 HOH HOH . D 4 HOH A 276 977 286 HOH HOH . D 4 HOH A 277 978 287 HOH HOH . D 4 HOH A 278 979 288 HOH HOH . D 4 HOH A 279 980 289 HOH HOH . D 4 HOH A 280 981 290 HOH HOH . D 4 HOH A 281 982 291 HOH HOH . D 4 HOH A 282 983 292 HOH HOH . D 4 HOH A 283 984 293 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 15.409 _atom_site.Cartn_y 27.431 _atom_site.Cartn_z 8.171 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.38 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 701 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #