data_1WE2 # _model_server_result.job_id 2WyYMH9trd5P9Of7r9wfvQ _model_server_result.datetime_utc '2024-11-23 23:34:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1we2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":177}' # _entry.id 1WE2 # _exptl.entry_id 1WE2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1WE2 _cell.length_a 62.91 _cell.length_b 62.91 _cell.length_c 90.92 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WE2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 16 A SER 16 1_555 B MG MG . A MG 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc2 E O2B ADP . A ADP 177 1_555 B MG MG . A MG 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc3 B MG MG . A MG 178 1_555 G O HOH . A HOH 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.973 ? metalc ? metalc4 B MG MG . A MG 178 1_555 G O HOH . A HOH 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? metalc ? metalc5 B MG MG . A MG 178 1_555 G O HOH . A HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc6 B MG MG . A MG 178 1_555 G O HOH . A HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 1WE2 _atom_sites.fract_transf_matrix[1][1] 0.0159 _atom_sites.fract_transf_matrix[1][2] 0.00918 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01835 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 178 178 MG MG . C 3 CL A 1 179 179 CL CL . D 3 CL A 1 180 180 CL CL . E 4 ADP A 1 177 177 ADP ADP . F 5 DHK A 1 181 181 DHK SHI . G 6 HOH A 1 182 182 HOH HOH . G 6 HOH A 2 183 183 HOH HOH . G 6 HOH A 3 184 184 HOH HOH . G 6 HOH A 4 185 185 HOH HOH . G 6 HOH A 5 186 186 HOH HOH . G 6 HOH A 6 187 187 HOH HOH . G 6 HOH A 7 188 188 HOH HOH . G 6 HOH A 8 189 189 HOH HOH . G 6 HOH A 9 190 190 HOH HOH . G 6 HOH A 10 191 191 HOH HOH . G 6 HOH A 11 192 192 HOH HOH . G 6 HOH A 12 193 193 HOH HOH . G 6 HOH A 13 194 194 HOH HOH . G 6 HOH A 14 195 195 HOH HOH . G 6 HOH A 15 196 196 HOH HOH . G 6 HOH A 16 197 197 HOH HOH . G 6 HOH A 17 198 198 HOH HOH . G 6 HOH A 18 199 199 HOH HOH . G 6 HOH A 19 200 200 HOH HOH . G 6 HOH A 20 201 201 HOH HOH . G 6 HOH A 21 202 202 HOH HOH . G 6 HOH A 22 203 203 HOH HOH . G 6 HOH A 23 204 204 HOH HOH . G 6 HOH A 24 205 205 HOH HOH . G 6 HOH A 25 206 206 HOH HOH . G 6 HOH A 26 207 207 HOH HOH . G 6 HOH A 27 208 208 HOH HOH . G 6 HOH A 28 209 209 HOH HOH . G 6 HOH A 29 210 210 HOH HOH . G 6 HOH A 30 211 211 HOH HOH . G 6 HOH A 31 212 212 HOH HOH . G 6 HOH A 32 213 213 HOH HOH . G 6 HOH A 33 214 214 HOH HOH . G 6 HOH A 34 215 215 HOH HOH . G 6 HOH A 35 216 216 HOH HOH . G 6 HOH A 36 217 217 HOH HOH . G 6 HOH A 37 218 218 HOH HOH . G 6 HOH A 38 219 219 HOH HOH . G 6 HOH A 39 220 220 HOH HOH . G 6 HOH A 40 221 221 HOH HOH . G 6 HOH A 41 222 222 HOH HOH . G 6 HOH A 42 223 223 HOH HOH . G 6 HOH A 43 224 224 HOH HOH . G 6 HOH A 44 225 225 HOH HOH . G 6 HOH A 45 226 226 HOH HOH . G 6 HOH A 46 227 227 HOH HOH . G 6 HOH A 47 228 228 HOH HOH . G 6 HOH A 48 229 229 HOH HOH . G 6 HOH A 49 230 230 HOH HOH . G 6 HOH A 50 231 231 HOH HOH . G 6 HOH A 51 232 232 HOH HOH . G 6 HOH A 52 233 233 HOH HOH . G 6 HOH A 53 234 234 HOH HOH . G 6 HOH A 54 235 235 HOH HOH . G 6 HOH A 55 236 236 HOH HOH . G 6 HOH A 56 237 237 HOH HOH . G 6 HOH A 57 238 238 HOH HOH . G 6 HOH A 58 239 239 HOH HOH . G 6 HOH A 59 240 240 HOH HOH . G 6 HOH A 60 241 241 HOH HOH . G 6 HOH A 61 242 242 HOH HOH . G 6 HOH A 62 243 243 HOH HOH . G 6 HOH A 63 244 244 HOH HOH . G 6 HOH A 64 245 245 HOH HOH . G 6 HOH A 65 246 246 HOH HOH . G 6 HOH A 66 247 247 HOH HOH . G 6 HOH A 67 248 248 HOH HOH . G 6 HOH A 68 249 249 HOH HOH . G 6 HOH A 69 250 250 HOH HOH . G 6 HOH A 70 251 251 HOH HOH . G 6 HOH A 71 252 252 HOH HOH . G 6 HOH A 72 253 253 HOH HOH . G 6 HOH A 73 254 254 HOH HOH . G 6 HOH A 74 255 255 HOH HOH . G 6 HOH A 75 256 256 HOH HOH . G 6 HOH A 76 257 257 HOH HOH . G 6 HOH A 77 258 258 HOH HOH . G 6 HOH A 78 259 259 HOH HOH . G 6 HOH A 79 260 260 HOH HOH . G 6 HOH A 80 261 261 HOH HOH . G 6 HOH A 81 262 262 HOH HOH . G 6 HOH A 82 263 263 HOH HOH . G 6 HOH A 83 264 264 HOH HOH . G 6 HOH A 84 265 265 HOH HOH . G 6 HOH A 85 266 266 HOH HOH . G 6 HOH A 86 267 267 HOH HOH . G 6 HOH A 87 268 268 HOH HOH . G 6 HOH A 88 269 269 HOH HOH . G 6 HOH A 89 270 270 HOH HOH . G 6 HOH A 90 271 271 HOH HOH . G 6 HOH A 91 272 272 HOH HOH . G 6 HOH A 92 273 273 HOH HOH . G 6 HOH A 93 274 274 HOH HOH . G 6 HOH A 94 275 275 HOH HOH . G 6 HOH A 95 276 276 HOH HOH . G 6 HOH A 96 277 277 HOH HOH . G 6 HOH A 97 278 278 HOH HOH . G 6 HOH A 98 279 279 HOH HOH . G 6 HOH A 99 280 280 HOH HOH . G 6 HOH A 100 281 281 HOH HOH . G 6 HOH A 101 282 282 HOH HOH . G 6 HOH A 102 283 283 HOH HOH . G 6 HOH A 103 284 284 HOH HOH . G 6 HOH A 104 285 285 HOH HOH . G 6 HOH A 105 286 286 HOH HOH . G 6 HOH A 106 287 287 HOH HOH . G 6 HOH A 107 288 288 HOH HOH . G 6 HOH A 108 289 289 HOH HOH . G 6 HOH A 109 290 290 HOH HOH . G 6 HOH A 110 291 291 HOH HOH . G 6 HOH A 111 292 292 HOH HOH . G 6 HOH A 112 293 293 HOH HOH . G 6 HOH A 113 294 294 HOH HOH . G 6 HOH A 114 295 295 HOH HOH . G 6 HOH A 115 296 296 HOH HOH . G 6 HOH A 116 297 297 HOH HOH . G 6 HOH A 117 298 298 HOH HOH . G 6 HOH A 118 299 299 HOH HOH . G 6 HOH A 119 300 300 HOH HOH . G 6 HOH A 120 301 301 HOH HOH . G 6 HOH A 121 302 302 HOH HOH . G 6 HOH A 122 303 303 HOH HOH . G 6 HOH A 123 304 304 HOH HOH . G 6 HOH A 124 305 305 HOH HOH . G 6 HOH A 125 306 306 HOH HOH . G 6 HOH A 126 307 307 HOH HOH . G 6 HOH A 127 308 308 HOH HOH . G 6 HOH A 128 309 309 HOH HOH . G 6 HOH A 129 310 310 HOH HOH . G 6 HOH A 130 311 311 HOH HOH . G 6 HOH A 131 312 312 HOH HOH . G 6 HOH A 132 313 313 HOH HOH . G 6 HOH A 133 314 314 HOH HOH . G 6 HOH A 134 315 315 HOH HOH . G 6 HOH A 135 316 316 HOH HOH . G 6 HOH A 136 317 317 HOH HOH . G 6 HOH A 137 318 318 HOH HOH . G 6 HOH A 138 319 319 HOH HOH . G 6 HOH A 139 320 320 HOH HOH . G 6 HOH A 140 321 321 HOH HOH . G 6 HOH A 141 322 322 HOH HOH . G 6 HOH A 142 323 323 HOH HOH . G 6 HOH A 143 324 324 HOH HOH . G 6 HOH A 144 325 325 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . E 4 34.423 32.171 28.941 1 24.7 ? PB ADP 177 A 1 HETATM 2 O O1B ADP . . . E 4 34.183 30.793 28.495 1 23.18 ? O1B ADP 177 A 1 HETATM 3 O O2B ADP . . . E 4 34.181 33.29 27.809 1 29.46 ? O2B ADP 177 A 1 HETATM 4 O O3B ADP . . . E 4 33.56 32.548 30.075 1 28.38 ? O3B ADP 177 A 1 HETATM 5 P PA ADP . . . E 4 37.152 33.133 28.829 1 27.5 ? PA ADP 177 A 1 HETATM 6 O O1A ADP . . . E 4 36.807 34.56 29.05 1 25.76 ? O1A ADP 177 A 1 HETATM 7 O O2A ADP . . . E 4 37.434 32.764 27.462 1 27.74 ? O2A ADP 177 A 1 HETATM 8 O O3A ADP . . . E 4 35.949 32.238 29.295 1 27.51 ? O3A ADP 177 A 1 HETATM 9 O O5' ADP . . . E 4 38.345 32.668 29.741 1 26.14 ? O5' ADP 177 A 1 HETATM 10 C C5' ADP . . . E 4 38.355 32.991 31.123 1 24.4 ? C5' ADP 177 A 1 HETATM 11 C C4' ADP . . . E 4 39.816 33.251 31.45 1 21.55 ? C4' ADP 177 A 1 HETATM 12 O O4' ADP . . . E 4 40.438 31.981 31.513 1 21.28 ? O4' ADP 177 A 1 HETATM 13 C C3' ADP . . . E 4 40.572 34.063 30.404 1 20.9 ? C3' ADP 177 A 1 HETATM 14 O O3' ADP . . . E 4 41.554 34.927 30.937 1 19.86 ? O3' ADP 177 A 1 HETATM 15 C C2' ADP . . . E 4 41.393 33.103 29.673 1 20.61 ? C2' ADP 177 A 1 HETATM 16 O O2' ADP . . . E 4 42.637 33.739 29.291 1 22.75 ? O2' ADP 177 A 1 HETATM 17 C C1' ADP . . . E 4 41.527 31.928 30.633 1 18.33 ? C1' ADP 177 A 1 HETATM 18 N N9 ADP . . . E 4 41.555 30.636 29.975 1 16.42 ? N9 ADP 177 A 1 HETATM 19 C C8 ADP . . . E 4 40.657 30.137 29.104 1 14.32 ? C8 ADP 177 A 1 HETATM 20 N N7 ADP . . . E 4 41.069 28.919 28.722 1 12.87 ? N7 ADP 177 A 1 HETATM 21 C C5 ADP . . . E 4 42.192 28.66 29.331 1 15.24 ? C5 ADP 177 A 1 HETATM 22 C C6 ADP . . . E 4 43.089 27.624 29.36 1 16.63 ? C6 ADP 177 A 1 HETATM 23 N N6 ADP . . . E 4 42.916 26.523 28.628 1 15.4 ? N6 ADP 177 A 1 HETATM 24 N N1 ADP . . . E 4 44.171 27.704 30.145 1 19.13 ? N1 ADP 177 A 1 HETATM 25 C C2 ADP . . . E 4 44.431 28.768 30.906 1 19 ? C2 ADP 177 A 1 HETATM 26 N N3 ADP . . . E 4 43.591 29.78 30.901 1 19.08 ? N3 ADP 177 A 1 HETATM 27 C C4 ADP . . . E 4 42.484 29.776 30.142 1 17.34 ? C4 ADP 177 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #