data_1WG8 # _model_server_result.job_id bcbM3ApeW8b4CSEQ3D0dSg _model_server_result.datetime_utc '2025-01-15 14:23:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1wg8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":3141}' # _entry.id 1WG8 # _exptl.entry_id 1WG8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1WG8 _cell.length_a 68.054 _cell.length_b 88.909 _cell.length_c 104.13 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WG8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 264 n n N HN1 SAM sing 265 n n N HN2 SAM sing 266 n n CA C SAM sing 267 n n CA CB SAM sing 268 n n CA HA SAM sing 269 n n C O SAM doub 270 n n C OXT SAM sing 271 n n CB CG SAM sing 272 n n CB HB1 SAM sing 273 n n CB HB2 SAM sing 274 n n CG SD SAM sing 275 n n CG HG1 SAM sing 276 n n CG HG2 SAM sing 277 n n SD CE SAM sing 278 n n SD C5' SAM sing 279 n n CE HE1 SAM sing 280 n n CE HE2 SAM sing 281 n n CE HE3 SAM sing 282 n n C5' C4' SAM sing 283 n n C5' "H5'1" SAM sing 284 n n C5' "H5'2" SAM sing 285 n n C4' O4' SAM sing 286 n n C4' C3' SAM sing 287 n n C4' H4' SAM sing 288 n n O4' C1' SAM sing 289 n n C3' O3' SAM sing 290 n n C3' C2' SAM sing 291 n n C3' H3' SAM sing 292 n n O3' HO3' SAM sing 293 n n C2' O2' SAM sing 294 n n C2' C1' SAM sing 295 n n C2' H2' SAM sing 296 n n O2' HO2' SAM sing 297 n n C1' N9 SAM sing 298 n n C1' H1' SAM sing 299 n n N9 C8 SAM sing 300 n y N9 C4 SAM sing 301 n y C8 N7 SAM doub 302 n y C8 H8 SAM sing 303 n n N7 C5 SAM sing 304 n y C5 C6 SAM sing 305 n y C5 C4 SAM doub 306 n y C6 N6 SAM sing 307 n n C6 N1 SAM doub 308 n y N6 HN61 SAM sing 309 n n N6 HN62 SAM sing 310 n n N1 C2 SAM sing 311 n y C2 N3 SAM doub 312 n y C2 H2 SAM sing 313 n n N3 C4 SAM sing 314 n y # _atom_sites.entry_id 1WG8 _atom_sites.fract_transf_matrix[1][1] 0.014694 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011247 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009603 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAM A 1 3142 3142 SAM SAM . D 2 SAM B 1 3141 3141 SAM SAM . E 3 HOH A 1 3143 2 HOH TIP . E 3 HOH A 2 3144 3 HOH TIP . E 3 HOH A 3 3145 5 HOH TIP . E 3 HOH A 4 3146 7 HOH TIP . E 3 HOH A 5 3147 8 HOH TIP . E 3 HOH A 6 3148 9 HOH TIP . E 3 HOH A 7 3149 10 HOH TIP . E 3 HOH A 8 3150 11 HOH TIP . E 3 HOH A 9 3151 12 HOH TIP . E 3 HOH A 10 3152 13 HOH TIP . E 3 HOH A 11 3153 14 HOH TIP . E 3 HOH A 12 3154 15 HOH TIP . E 3 HOH A 13 3155 16 HOH TIP . E 3 HOH A 14 3156 17 HOH TIP . E 3 HOH A 15 3157 20 HOH TIP . E 3 HOH A 16 3158 22 HOH TIP . E 3 HOH A 17 3159 24 HOH TIP . E 3 HOH A 18 3160 27 HOH TIP . E 3 HOH A 19 3161 30 HOH TIP . E 3 HOH A 20 3162 32 HOH TIP . E 3 HOH A 21 3163 33 HOH TIP . E 3 HOH A 22 3164 34 HOH TIP . E 3 HOH A 23 3165 35 HOH TIP . E 3 HOH A 24 3166 36 HOH TIP . E 3 HOH A 25 3167 38 HOH TIP . E 3 HOH A 26 3168 39 HOH TIP . E 3 HOH A 27 3169 40 HOH TIP . E 3 HOH A 28 3170 41 HOH TIP . E 3 HOH A 29 3171 42 HOH TIP . E 3 HOH A 30 3172 43 HOH TIP . E 3 HOH A 31 3173 44 HOH TIP . E 3 HOH A 32 3174 45 HOH TIP . E 3 HOH A 33 3175 48 HOH TIP . E 3 HOH A 34 3176 49 HOH TIP . E 3 HOH A 35 3177 50 HOH TIP . E 3 HOH A 36 3178 51 HOH TIP . E 3 HOH A 37 3179 53 HOH TIP . E 3 HOH A 38 3180 54 HOH TIP . E 3 HOH A 39 3181 55 HOH TIP . E 3 HOH A 40 3182 56 HOH TIP . E 3 HOH A 41 3183 57 HOH TIP . E 3 HOH A 42 3184 58 HOH TIP . E 3 HOH A 43 3185 59 HOH TIP . E 3 HOH A 44 3186 60 HOH TIP . E 3 HOH A 45 3187 61 HOH TIP . E 3 HOH A 46 3188 62 HOH TIP . E 3 HOH A 47 3189 63 HOH TIP . E 3 HOH A 48 3190 64 HOH TIP . E 3 HOH A 49 3191 65 HOH TIP . E 3 HOH A 50 3192 66 HOH TIP . E 3 HOH A 51 3193 67 HOH TIP . E 3 HOH A 52 3194 69 HOH TIP . E 3 HOH A 53 3195 70 HOH TIP . E 3 HOH A 54 3196 71 HOH TIP . E 3 HOH A 55 3197 72 HOH TIP . E 3 HOH A 56 3198 73 HOH TIP . E 3 HOH A 57 3199 77 HOH TIP . E 3 HOH A 58 3200 78 HOH TIP . E 3 HOH A 59 3201 80 HOH TIP . E 3 HOH A 60 3202 81 HOH TIP . E 3 HOH A 61 3203 82 HOH TIP . E 3 HOH A 62 3204 84 HOH TIP . E 3 HOH A 63 3205 85 HOH TIP . E 3 HOH A 64 3206 91 HOH TIP . E 3 HOH A 65 3207 92 HOH TIP . E 3 HOH A 66 3208 93 HOH TIP . E 3 HOH A 67 3209 95 HOH TIP . E 3 HOH A 68 3210 96 HOH TIP . E 3 HOH A 69 3211 97 HOH TIP . E 3 HOH A 70 3212 98 HOH TIP . E 3 HOH A 71 3213 100 HOH TIP . E 3 HOH A 72 3214 102 HOH TIP . E 3 HOH A 73 3215 104 HOH TIP . E 3 HOH A 74 3216 105 HOH TIP . E 3 HOH A 75 3217 106 HOH TIP . E 3 HOH A 76 3218 110 HOH TIP . E 3 HOH A 77 3219 113 HOH TIP . E 3 HOH A 78 3220 115 HOH TIP . E 3 HOH A 79 3221 116 HOH TIP . E 3 HOH A 80 3222 118 HOH TIP . E 3 HOH A 81 3223 120 HOH TIP . E 3 HOH A 82 3224 122 HOH TIP . E 3 HOH A 83 3225 126 HOH TIP . E 3 HOH A 84 3226 127 HOH TIP . E 3 HOH A 85 3227 128 HOH TIP . E 3 HOH A 86 3228 130 HOH TIP . E 3 HOH A 87 3229 132 HOH TIP . E 3 HOH A 88 3230 133 HOH TIP . E 3 HOH A 89 3231 134 HOH TIP . E 3 HOH A 90 3232 135 HOH TIP . E 3 HOH A 91 3233 136 HOH TIP . E 3 HOH A 92 3234 137 HOH TIP . E 3 HOH A 93 3235 138 HOH TIP . E 3 HOH A 94 3236 139 HOH TIP . E 3 HOH A 95 3237 142 HOH TIP . E 3 HOH A 96 3238 143 HOH TIP . E 3 HOH A 97 3239 144 HOH TIP . E 3 HOH A 98 3240 145 HOH TIP . E 3 HOH A 99 3241 146 HOH TIP . E 3 HOH A 100 3242 148 HOH TIP . E 3 HOH A 101 3243 150 HOH TIP . E 3 HOH A 102 3244 151 HOH TIP . E 3 HOH A 103 3245 152 HOH TIP . E 3 HOH A 104 3246 153 HOH TIP . E 3 HOH A 105 3247 154 HOH TIP . E 3 HOH A 106 3248 155 HOH TIP . E 3 HOH A 107 3249 156 HOH TIP . E 3 HOH A 108 3250 157 HOH TIP . E 3 HOH A 109 3251 158 HOH TIP . E 3 HOH A 110 3252 162 HOH TIP . E 3 HOH A 111 3253 163 HOH TIP . E 3 HOH A 112 3254 165 HOH TIP . E 3 HOH A 113 3255 166 HOH TIP . E 3 HOH A 114 3256 167 HOH TIP . E 3 HOH A 115 3257 169 HOH TIP . E 3 HOH A 116 3258 170 HOH TIP . E 3 HOH A 117 3259 171 HOH TIP . E 3 HOH A 118 3260 172 HOH TIP . E 3 HOH A 119 3261 173 HOH TIP . E 3 HOH A 120 3262 174 HOH TIP . E 3 HOH A 121 3263 175 HOH TIP . E 3 HOH A 122 3264 176 HOH TIP . E 3 HOH A 123 3265 178 HOH TIP . E 3 HOH A 124 3266 179 HOH TIP . E 3 HOH A 125 3267 180 HOH TIP . E 3 HOH A 126 3268 182 HOH TIP . E 3 HOH A 127 3269 186 HOH TIP . E 3 HOH A 128 3270 187 HOH TIP . E 3 HOH A 129 3271 188 HOH TIP . E 3 HOH A 130 3272 189 HOH TIP . E 3 HOH A 131 3273 191 HOH TIP . E 3 HOH A 132 3274 192 HOH TIP . E 3 HOH A 133 3275 193 HOH TIP . E 3 HOH A 134 3276 194 HOH TIP . E 3 HOH A 135 3277 195 HOH TIP . E 3 HOH A 136 3278 196 HOH TIP . E 3 HOH A 137 3279 197 HOH TIP . E 3 HOH A 138 3280 198 HOH TIP . E 3 HOH A 139 3281 199 HOH TIP . E 3 HOH A 140 3282 200 HOH TIP . E 3 HOH A 141 3283 201 HOH TIP . E 3 HOH A 142 3284 202 HOH TIP . E 3 HOH A 143 3285 203 HOH TIP . E 3 HOH A 144 3286 204 HOH TIP . E 3 HOH A 145 3287 205 HOH TIP . E 3 HOH A 146 3288 206 HOH TIP . E 3 HOH A 147 3289 207 HOH TIP . E 3 HOH A 148 3290 208 HOH TIP . E 3 HOH A 149 3291 209 HOH TIP . E 3 HOH A 150 3292 210 HOH TIP . E 3 HOH A 151 3293 211 HOH TIP . E 3 HOH A 152 3294 212 HOH TIP . E 3 HOH A 153 3295 213 HOH TIP . E 3 HOH A 154 3296 214 HOH TIP . E 3 HOH A 155 3297 215 HOH TIP . E 3 HOH A 156 3298 216 HOH TIP . E 3 HOH A 157 3299 217 HOH TIP . E 3 HOH A 158 3300 218 HOH TIP . E 3 HOH A 159 3301 219 HOH TIP . E 3 HOH A 160 3302 220 HOH TIP . E 3 HOH A 161 3303 221 HOH TIP . E 3 HOH A 162 3304 222 HOH TIP . E 3 HOH A 163 3305 223 HOH TIP . E 3 HOH A 164 3306 224 HOH TIP . E 3 HOH A 165 3307 225 HOH TIP . E 3 HOH A 166 3308 226 HOH TIP . E 3 HOH A 167 3309 227 HOH TIP . E 3 HOH A 168 3310 228 HOH TIP . E 3 HOH A 169 3311 229 HOH TIP . E 3 HOH A 170 3312 230 HOH TIP . E 3 HOH A 171 3313 231 HOH TIP . E 3 HOH A 172 3314 232 HOH TIP . E 3 HOH A 173 3315 233 HOH TIP . E 3 HOH A 174 3316 240 HOH TIP . E 3 HOH A 175 3317 241 HOH TIP . E 3 HOH A 176 3318 242 HOH TIP . F 3 HOH B 1 3142 18 HOH TIP . F 3 HOH B 2 3143 19 HOH TIP . F 3 HOH B 3 3144 21 HOH TIP . F 3 HOH B 4 3145 23 HOH TIP . F 3 HOH B 5 3146 25 HOH TIP . F 3 HOH B 6 3147 26 HOH TIP . F 3 HOH B 7 3148 28 HOH TIP . F 3 HOH B 8 3149 37 HOH TIP . F 3 HOH B 9 3150 46 HOH TIP . F 3 HOH B 10 3151 52 HOH TIP . F 3 HOH B 11 3152 68 HOH TIP . F 3 HOH B 12 3153 75 HOH TIP . F 3 HOH B 13 3154 76 HOH TIP . F 3 HOH B 14 3155 79 HOH TIP . F 3 HOH B 15 3156 83 HOH TIP . F 3 HOH B 16 3157 86 HOH TIP . F 3 HOH B 17 3158 87 HOH TIP . F 3 HOH B 18 3159 88 HOH TIP . F 3 HOH B 19 3160 89 HOH TIP . F 3 HOH B 20 3161 90 HOH TIP . F 3 HOH B 21 3162 94 HOH TIP . F 3 HOH B 22 3163 99 HOH TIP . F 3 HOH B 23 3164 101 HOH TIP . F 3 HOH B 24 3165 103 HOH TIP . F 3 HOH B 25 3166 107 HOH TIP . F 3 HOH B 26 3167 108 HOH TIP . F 3 HOH B 27 3168 111 HOH TIP . F 3 HOH B 28 3169 112 HOH TIP . F 3 HOH B 29 3170 114 HOH TIP . F 3 HOH B 30 3171 117 HOH TIP . F 3 HOH B 31 3172 119 HOH TIP . F 3 HOH B 32 3173 121 HOH TIP . F 3 HOH B 33 3174 123 HOH TIP . F 3 HOH B 34 3175 125 HOH TIP . F 3 HOH B 35 3176 129 HOH TIP . F 3 HOH B 36 3177 131 HOH TIP . F 3 HOH B 37 3178 140 HOH TIP . F 3 HOH B 38 3179 147 HOH TIP . F 3 HOH B 39 3180 149 HOH TIP . F 3 HOH B 40 3181 159 HOH TIP . F 3 HOH B 41 3182 160 HOH TIP . F 3 HOH B 42 3183 161 HOH TIP . F 3 HOH B 43 3184 177 HOH TIP . F 3 HOH B 44 3185 181 HOH TIP . F 3 HOH B 45 3186 183 HOH TIP . F 3 HOH B 46 3187 184 HOH TIP . F 3 HOH B 47 3188 185 HOH TIP . F 3 HOH B 48 3189 190 HOH TIP . F 3 HOH B 49 3190 234 HOH TIP . F 3 HOH B 50 3191 235 HOH TIP . F 3 HOH B 51 3192 236 HOH TIP . F 3 HOH B 52 3193 237 HOH TIP . F 3 HOH B 53 3194 238 HOH TIP . F 3 HOH B 54 3195 239 HOH TIP . F 3 HOH B 55 3196 243 HOH TIP . F 3 HOH B 56 3197 244 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . D 2 35.754 30.514 16.06 1 44.32 ? N SAM 3141 B 1 HETATM 2 C CA SAM . . . D 2 34.412 29.958 15.719 1 50.39 ? CA SAM 3141 B 1 HETATM 3 C C SAM . . . D 2 33.884 29.047 16.829 1 49.58 ? C SAM 3141 B 1 HETATM 4 O O SAM . . . D 2 34.582 28.88 17.858 1 52.25 ? O SAM 3141 B 1 HETATM 5 O OXT SAM . . . D 2 32.737 28.527 16.608 1 46.27 ? OXT SAM 3141 B 1 HETATM 6 C CB SAM . . . D 2 34.498 29.25 14.361 1 50.53 ? CB SAM 3141 B 1 HETATM 7 C CG SAM . . . D 2 34.695 30.317 13.331 1 45.06 ? CG SAM 3141 B 1 HETATM 8 S SD SAM . . . D 2 34.851 29.881 11.577 1 44.51 ? SD SAM 3141 B 1 HETATM 9 C CE SAM . . . D 2 36.512 29.166 11.567 1 54.88 ? CE SAM 3141 B 1 HETATM 10 C C5' SAM . . . D 2 35.079 31.436 10.816 1 49.63 ? C5' SAM 3141 B 1 HETATM 11 C C4' SAM . . . D 2 33.862 32.324 10.593 1 49.48 ? C4' SAM 3141 B 1 HETATM 12 O O4' SAM . . . D 2 34.427 33.536 10.054 1 48.02 ? O4' SAM 3141 B 1 HETATM 13 C C3' SAM . . . D 2 32.973 31.822 9.444 1 45.44 ? C3' SAM 3141 B 1 HETATM 14 O O3' SAM . . . D 2 31.68 31.592 10.068 1 49.46 ? O3' SAM 3141 B 1 HETATM 15 C C2' SAM . . . D 2 32.805 32.981 8.463 1 48.31 ? C2' SAM 3141 B 1 HETATM 16 O O2' SAM . . . D 2 31.542 33.298 7.895 1 45.69 ? O2' SAM 3141 B 1 HETATM 17 C C1' SAM . . . D 2 33.528 34.134 9.198 1 46.26 ? C1' SAM 3141 B 1 HETATM 18 N N9 SAM . . . D 2 34.274 35.029 8.347 1 50.41 ? N9 SAM 3141 B 1 HETATM 19 C C8 SAM . . . D 2 35.284 34.758 7.468 1 41.77 ? C8 SAM 3141 B 1 HETATM 20 N N7 SAM . . . D 2 35.746 35.816 6.861 1 47.44 ? N7 SAM 3141 B 1 HETATM 21 C C5 SAM . . . D 2 34.988 36.859 7.38 1 43.31 ? C5 SAM 3141 B 1 HETATM 22 C C6 SAM . . . D 2 34.98 38.274 7.146 1 41.25 ? C6 SAM 3141 B 1 HETATM 23 N N6 SAM . . . D 2 35.82 38.87 6.263 1 35.59 ? N6 SAM 3141 B 1 HETATM 24 N N1 SAM . . . D 2 34.093 39.059 7.841 1 37.59 ? N1 SAM 3141 B 1 HETATM 25 C C2 SAM . . . D 2 33.25 38.457 8.723 1 38.21 ? C2 SAM 3141 B 1 HETATM 26 N N3 SAM . . . D 2 33.163 37.139 9.018 1 44.24 ? N3 SAM 3141 B 1 HETATM 27 C C4 SAM . . . D 2 34.074 36.386 8.302 1 45.92 ? C4 SAM 3141 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #