data_1WK9 # _model_server_result.job_id Ue0e4aiqQsxYpD1ju_r4LQ _model_server_result.datetime_utc '2025-02-05 14:02:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1wk9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":999}' # _entry.id 1WK9 # _exptl.entry_id 1WK9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 447.424 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-O-(N-(L-THREONYL)-SULFAMOYL)ADENOSINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1WK9 _cell.length_a 95.49 _cell.length_b 95.49 _cell.length_c 72.3 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WK9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H21 N7 O8 S' _chem_comp.formula_weight 447.424 _chem_comp.id TSB _chem_comp.mon_nstd_flag . _chem_comp.name "5'-O-(N-(L-THREONYL)-SULFAMOYL)ADENOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CG2 CB TSB sing 321 n n CG2 HG21 TSB sing 322 n n CG2 HG22 TSB sing 323 n n CG2 HG23 TSB sing 324 n n N CA TSB sing 325 n n N HN11 TSB sing 326 n n N HN12 TSB sing 327 n n CA CB TSB sing 328 n n CA C TSB sing 329 n n CA HA TSB sing 330 n n CB OG1 TSB sing 331 n n CB HB TSB sing 332 n n OG1 HG1 TSB sing 333 n n C O TSB doub 334 n n C N8 TSB sing 335 n n N8 S1 TSB sing 336 n n N8 HN8 TSB sing 337 n n S1 O1S TSB doub 338 n n S1 O2S TSB doub 339 n n S1 O5' TSB sing 340 n n O5' C5' TSB sing 341 n n C5' C4' TSB sing 342 n n C5' "H5'1" TSB sing 343 n n C5' "H5'2" TSB sing 344 n n C4' O4' TSB sing 345 n n C4' C3' TSB sing 346 n n C4' H4' TSB sing 347 n n O4' C1' TSB sing 348 n n C3' O3' TSB sing 349 n n C3' C2' TSB sing 350 n n C3' H3' TSB sing 351 n n O3' HO3' TSB sing 352 n n C2' O2' TSB sing 353 n n C2' C1' TSB sing 354 n n C2' H2' TSB sing 355 n n O2' HO2' TSB sing 356 n n C1' N9 TSB sing 357 n n C1' H1' TSB sing 358 n n N9 C8 TSB sing 359 n y N9 C4 TSB sing 360 n y C8 N7 TSB doub 361 n y C8 H8 TSB sing 362 n n N7 C5 TSB sing 363 n y C5 C6 TSB sing 364 n y C5 C4 TSB doub 365 n y C6 N6 TSB sing 366 n n C6 N1 TSB doub 367 n y N6 HN61 TSB sing 368 n n N6 HN62 TSB sing 369 n n N1 C2 TSB sing 370 n y C2 N3 TSB doub 371 n y C2 H2 TSB sing 372 n n N3 C4 TSB sing 373 n y # _atom_sites.entry_id 1WK9 _atom_sites.fract_transf_matrix[1][1] 0.010472 _atom_sites.fract_transf_matrix[1][2] 0.006046 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012092 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013831 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TSB A 1 999 999 TSB TMS . C 3 HOH A 1 1 1 HOH TIP . C 3 HOH A 2 2 2 HOH TIP . C 3 HOH A 3 3 3 HOH TIP . C 3 HOH A 4 4 4 HOH TIP . C 3 HOH A 5 5 5 HOH TIP . C 3 HOH A 6 6 6 HOH TIP . C 3 HOH A 7 7 7 HOH TIP . C 3 HOH A 8 8 8 HOH TIP . C 3 HOH A 9 9 9 HOH TIP . C 3 HOH A 10 10 10 HOH TIP . C 3 HOH A 11 11 11 HOH TIP . C 3 HOH A 12 12 12 HOH TIP . C 3 HOH A 13 13 13 HOH TIP . C 3 HOH A 14 14 14 HOH TIP . C 3 HOH A 15 15 15 HOH TIP . C 3 HOH A 16 16 16 HOH TIP . C 3 HOH A 17 17 17 HOH TIP . C 3 HOH A 18 18 18 HOH TIP . C 3 HOH A 19 19 19 HOH TIP . C 3 HOH A 20 20 20 HOH TIP . C 3 HOH A 21 21 21 HOH TIP . C 3 HOH A 22 22 22 HOH TIP . C 3 HOH A 23 23 23 HOH TIP . C 3 HOH A 24 24 24 HOH TIP . C 3 HOH A 25 25 25 HOH TIP . C 3 HOH A 26 26 26 HOH TIP . C 3 HOH A 27 27 27 HOH TIP . C 3 HOH A 28 28 28 HOH TIP . C 3 HOH A 29 29 29 HOH TIP . C 3 HOH A 30 30 30 HOH TIP . C 3 HOH A 31 31 31 HOH TIP . C 3 HOH A 32 32 32 HOH TIP . C 3 HOH A 33 33 33 HOH TIP . C 3 HOH A 34 34 34 HOH TIP . C 3 HOH A 35 35 35 HOH TIP . C 3 HOH A 36 36 36 HOH TIP . C 3 HOH A 37 37 37 HOH TIP . C 3 HOH A 38 38 38 HOH TIP . C 3 HOH A 39 39 39 HOH TIP . C 3 HOH A 40 40 40 HOH TIP . C 3 HOH A 41 41 41 HOH TIP . C 3 HOH A 42 42 42 HOH TIP . C 3 HOH A 43 43 43 HOH TIP . C 3 HOH A 44 44 44 HOH TIP . C 3 HOH A 45 45 45 HOH TIP . C 3 HOH A 46 46 46 HOH TIP . C 3 HOH A 47 47 47 HOH TIP . C 3 HOH A 48 48 48 HOH TIP . C 3 HOH A 49 49 49 HOH TIP . C 3 HOH A 50 50 50 HOH TIP . C 3 HOH A 51 51 51 HOH TIP . C 3 HOH A 52 52 52 HOH TIP . C 3 HOH A 53 53 53 HOH TIP . C 3 HOH A 54 54 54 HOH TIP . C 3 HOH A 55 55 55 HOH TIP . C 3 HOH A 56 56 56 HOH TIP . C 3 HOH A 57 57 57 HOH TIP . C 3 HOH A 58 58 58 HOH TIP . C 3 HOH A 59 59 59 HOH TIP . C 3 HOH A 60 60 60 HOH TIP . C 3 HOH A 61 61 61 HOH TIP . C 3 HOH A 62 62 62 HOH TIP . C 3 HOH A 63 63 63 HOH TIP . C 3 HOH A 64 64 64 HOH TIP . C 3 HOH A 65 65 65 HOH TIP . C 3 HOH A 66 66 66 HOH TIP . C 3 HOH A 67 67 67 HOH TIP . C 3 HOH A 68 68 68 HOH TIP . C 3 HOH A 69 69 69 HOH TIP . C 3 HOH A 70 70 70 HOH TIP . C 3 HOH A 71 71 71 HOH TIP . C 3 HOH A 72 72 72 HOH TIP . C 3 HOH A 73 73 73 HOH TIP . C 3 HOH A 74 74 74 HOH TIP . C 3 HOH A 75 75 75 HOH TIP . C 3 HOH A 76 76 76 HOH TIP . C 3 HOH A 77 77 77 HOH TIP . C 3 HOH A 78 78 78 HOH TIP . C 3 HOH A 79 79 79 HOH TIP . C 3 HOH A 80 80 80 HOH TIP . C 3 HOH A 81 81 81 HOH TIP . C 3 HOH A 82 82 82 HOH TIP . C 3 HOH A 83 83 83 HOH TIP . C 3 HOH A 84 84 84 HOH TIP . C 3 HOH A 85 85 85 HOH TIP . C 3 HOH A 86 86 86 HOH TIP . C 3 HOH A 87 87 87 HOH TIP . C 3 HOH A 88 88 88 HOH TIP . C 3 HOH A 89 89 89 HOH TIP . C 3 HOH A 90 90 90 HOH TIP . C 3 HOH A 91 91 91 HOH TIP . C 3 HOH A 92 92 92 HOH TIP . C 3 HOH A 93 93 93 HOH TIP . C 3 HOH A 94 94 94 HOH TIP . C 3 HOH A 95 95 95 HOH TIP . C 3 HOH A 96 96 96 HOH TIP . C 3 HOH A 97 97 97 HOH TIP . C 3 HOH A 98 98 98 HOH TIP . C 3 HOH A 99 99 99 HOH TIP . C 3 HOH A 100 100 100 HOH TIP . C 3 HOH A 101 101 101 HOH TIP . C 3 HOH A 102 102 102 HOH TIP . C 3 HOH A 103 103 103 HOH TIP . C 3 HOH A 104 104 104 HOH TIP . C 3 HOH A 105 105 105 HOH TIP . C 3 HOH A 106 106 106 HOH TIP . C 3 HOH A 107 107 107 HOH TIP . C 3 HOH A 108 108 108 HOH TIP . C 3 HOH A 109 109 109 HOH TIP . C 3 HOH A 110 110 110 HOH TIP . C 3 HOH A 111 111 111 HOH TIP . C 3 HOH A 112 112 112 HOH TIP . C 3 HOH A 113 113 113 HOH TIP . C 3 HOH A 114 114 114 HOH TIP . C 3 HOH A 115 115 115 HOH TIP . C 3 HOH A 116 116 116 HOH TIP . C 3 HOH A 117 117 117 HOH TIP . C 3 HOH A 118 118 118 HOH TIP . C 3 HOH A 119 119 119 HOH TIP . C 3 HOH A 120 120 120 HOH TIP . C 3 HOH A 121 121 121 HOH TIP . C 3 HOH A 122 122 122 HOH TIP . C 3 HOH A 123 123 123 HOH TIP . C 3 HOH A 124 124 124 HOH TIP . C 3 HOH A 125 125 125 HOH TIP . C 3 HOH A 126 126 126 HOH TIP . C 3 HOH A 127 127 127 HOH TIP . C 3 HOH A 128 128 128 HOH TIP . C 3 HOH A 129 129 129 HOH TIP . C 3 HOH A 130 130 130 HOH TIP . C 3 HOH A 131 131 131 HOH TIP . C 3 HOH A 132 132 132 HOH TIP . C 3 HOH A 133 133 133 HOH TIP . C 3 HOH A 134 134 134 HOH TIP . C 3 HOH A 135 135 135 HOH TIP . C 3 HOH A 136 136 136 HOH TIP . C 3 HOH A 137 137 137 HOH TIP . C 3 HOH A 138 138 138 HOH TIP . C 3 HOH A 139 139 139 HOH TIP . C 3 HOH A 140 140 140 HOH TIP . C 3 HOH A 141 141 141 HOH TIP . C 3 HOH A 142 142 142 HOH TIP . C 3 HOH A 143 143 143 HOH TIP . C 3 HOH A 144 144 144 HOH TIP . C 3 HOH A 145 145 145 HOH TIP . C 3 HOH A 146 146 146 HOH TIP . C 3 HOH A 147 147 147 HOH TIP . C 3 HOH A 148 148 148 HOH TIP . C 3 HOH A 149 149 149 HOH TIP . C 3 HOH A 150 150 150 HOH TIP . C 3 HOH A 151 151 151 HOH TIP . C 3 HOH A 152 152 152 HOH TIP . C 3 HOH A 153 153 153 HOH TIP . C 3 HOH A 154 154 154 HOH TIP . C 3 HOH A 155 155 155 HOH TIP . C 3 HOH A 156 156 156 HOH TIP . C 3 HOH A 157 157 157 HOH TIP . C 3 HOH A 158 158 158 HOH TIP . C 3 HOH A 159 159 159 HOH TIP . C 3 HOH A 160 160 160 HOH TIP . C 3 HOH A 161 161 161 HOH TIP . C 3 HOH A 162 162 162 HOH TIP . C 3 HOH A 163 163 163 HOH TIP . C 3 HOH A 164 164 164 HOH TIP . C 3 HOH A 165 165 165 HOH TIP . C 3 HOH A 166 166 166 HOH TIP . C 3 HOH A 167 167 167 HOH TIP . C 3 HOH A 168 168 168 HOH TIP . C 3 HOH A 169 169 169 HOH TIP . C 3 HOH A 170 170 170 HOH TIP . C 3 HOH A 171 171 171 HOH TIP . C 3 HOH A 172 172 172 HOH TIP . C 3 HOH A 173 173 173 HOH TIP . C 3 HOH A 174 174 174 HOH TIP . C 3 HOH A 175 175 175 HOH TIP . C 3 HOH A 176 176 176 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CG2 TSB . . . B 2 53.67 170.666 52.757 1 25.22 ? CG2 TSB 999 A 1 HETATM 2 N N TSB . . . B 2 54.298 174.37 52.189 1 18.36 ? N TSB 999 A 1 HETATM 3 C CA TSB . . . B 2 53.594 173.181 52.69 1 32.81 ? CA TSB 999 A 1 HETATM 4 C CB TSB . . . B 2 54.503 171.949 52.696 1 31.86 ? CB TSB 999 A 1 HETATM 5 O OG1 TSB . . . B 2 55.31 171.941 51.515 1 25.18 ? OG1 TSB 999 A 1 HETATM 6 C C TSB . . . B 2 53.077 173.474 54.1 1 36.02 ? C TSB 999 A 1 HETATM 7 O O TSB . . . B 2 53.223 174.588 54.599 1 39.33 ? O TSB 999 A 1 HETATM 8 N N8 TSB . . . B 2 52.714 172.405 54.802 1 42.2 ? N8 TSB 999 A 1 HETATM 9 S S1 TSB . . . B 2 52.063 172.563 56.29 1 43.82 ? S1 TSB 999 A 1 HETATM 10 O O1S TSB . . . B 2 53.014 172.599 57.448 1 30.37 ? O1S TSB 999 A 1 HETATM 11 O O2S TSB . . . B 2 50.762 171.82 56.391 1 32.89 ? O2S TSB 999 A 1 HETATM 12 O O5' TSB . . . B 2 51.606 173.996 56.315 1 40.07 ? O5' TSB 999 A 1 HETATM 13 C C5' TSB . . . B 2 50.207 174.272 56.47 1 40.36 ? C5' TSB 999 A 1 HETATM 14 C C4' TSB . . . B 2 49.668 175.431 55.623 1 42.01 ? C4' TSB 999 A 1 HETATM 15 O O4' TSB . . . B 2 50.155 176.692 56.121 1 37.14 ? O4' TSB 999 A 1 HETATM 16 C C3' TSB . . . B 2 50.111 175.34 54.16 1 47 ? C3' TSB 999 A 1 HETATM 17 O O3' TSB . . . B 2 49.138 175.949 53.306 1 49.44 ? O3' TSB 999 A 1 HETATM 18 C C2' TSB . . . B 2 51.372 176.199 54.205 1 46.62 ? C2' TSB 999 A 1 HETATM 19 O O2' TSB . . . B 2 51.707 176.62 52.879 1 50.95 ? O2' TSB 999 A 1 HETATM 20 C C1' TSB . . . B 2 50.832 177.361 55.042 1 39.16 ? C1' TSB 999 A 1 HETATM 21 N N9 TSB . . . B 2 51.935 178.173 55.602 1 38.22 ? N9 TSB 999 A 1 HETATM 22 C C8 TSB . . . B 2 52.817 177.739 56.5 1 34.47 ? C8 TSB 999 A 1 HETATM 23 N N7 TSB . . . B 2 53.715 178.69 56.744 1 29.82 ? N7 TSB 999 A 1 HETATM 24 C C5 TSB . . . B 2 53.399 179.743 55.996 1 30.45 ? C5 TSB 999 A 1 HETATM 25 C C6 TSB . . . B 2 53.993 180.985 55.813 1 27.39 ? C6 TSB 999 A 1 HETATM 26 N N6 TSB . . . B 2 55.098 181.306 56.482 1 28.6 ? N6 TSB 999 A 1 HETATM 27 N N1 TSB . . . B 2 53.414 181.879 54.903 1 27.32 ? N1 TSB 999 A 1 HETATM 28 C C2 TSB . . . B 2 52.257 181.495 54.21 1 24.84 ? C2 TSB 999 A 1 HETATM 29 N N3 TSB . . . B 2 51.724 180.302 54.411 1 30.7 ? N3 TSB 999 A 1 HETATM 30 C C4 TSB . . . B 2 52.258 179.422 55.272 1 31.65 ? C4 TSB 999 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #