data_1WKL
#
_model_server_result.job_id            ekEsJ9THiJBN1KSXE3hJcg 
_model_server_result.datetime_utc      '2024-10-19 03:45:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1wkl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":138}' 
#
_entry.id    1WKL 
#
_exptl.entry_id    1WKL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              81.996 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHONIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1WKL 
_cell.length_a            122.897 
_cell.length_b            122.897 
_cell.length_c            105.492 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1WKL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        182 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA,PQS hexameric 6 author_and_software_defined_assembly 1 
PISA dodecameric 12 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H 1 1,2,3 
A,B,C,D,E,F,G,H 2 1,2,3,4,5,6 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 61.4485 106.431924 0 
3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -61.4485 106.431924 0 
4 'crystal symmetry operation' 10_666 -y+1,-x+1,-z+3/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 61.4485 106.431924 158.238 
5 'crystal symmetry operation' 11_556 -x+y,y,-z+3/2 -1 0 0 0 1 0 0 0 -1 0 0 158.238 
6 'crystal symmetry operation' 12_566 x,x-y+1,-z+3/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -61.4485 106.431924 158.238 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B NH2 ARG 85 B ARG 85 1_555 E MG MG . B MG 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.112 ? 
metalc ? metalc2 B O GLY 116 B GLY 116 1_555 E MG MG . B MG 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.092 ? 
metalc ? metalc3 B N GLY 116 B GLY 116 1_555 E MG MG . B MG 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.822 ? 
metalc ? metalc4 F O3G ATP . B ATP 856 1_555 E MG MG . B MG 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.835 ? 
#
_chem_comp.formula           'H3 O3 P' 
_chem_comp.formula_weight    81.996 
_chem_comp.id                PHS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P PHS doub 340 n n 
P O2P PHS sing 341 n n 
P O3P PHS sing 342 n n 
O2P HO2P PHS sing 343 n n 
O3P HO3P PHS sing 344 n n 
HP1 P PHS sing 345 n n 
#
_atom_sites.entry_id                     1WKL 
_atom_sites.fract_transf_matrix[1][1]    0.008137 
_atom_sites.fract_transf_matrix[1][2]    0.004698 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009396 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009479 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PHS A 1 138 115 PHS PHS . 
D 3 ADP A 1 646 646 ADP ADP . 
E 4 MG B 1 900 900 MG MG2 . 
F 5 ATP B 1 856 856 ATP ATP . 
G 6 HOH A 1 647 12 HOH TIP . 
G 6 HOH A 2 648 13 HOH TIP . 
G 6 HOH A 3 649 17 HOH TIP . 
G 6 HOH A 4 650 22 HOH TIP . 
G 6 HOH A 5 651 23 HOH TIP . 
G 6 HOH A 6 652 24 HOH TIP . 
G 6 HOH A 7 653 25 HOH TIP . 
G 6 HOH A 8 654 27 HOH TIP . 
G 6 HOH A 9 655 28 HOH TIP . 
G 6 HOH A 10 656 30 HOH TIP . 
G 6 HOH A 11 657 31 HOH TIP . 
G 6 HOH A 12 658 32 HOH TIP . 
G 6 HOH A 13 659 33 HOH TIP . 
G 6 HOH A 14 660 35 HOH TIP . 
G 6 HOH A 15 661 37 HOH TIP . 
G 6 HOH A 16 662 41 HOH TIP . 
G 6 HOH A 17 663 43 HOH TIP . 
G 6 HOH A 18 664 44 HOH TIP . 
G 6 HOH A 19 665 46 HOH TIP . 
G 6 HOH A 20 666 47 HOH TIP . 
G 6 HOH A 21 667 51 HOH TIP . 
G 6 HOH A 22 668 53 HOH TIP . 
G 6 HOH A 23 669 55 HOH TIP . 
G 6 HOH A 24 670 56 HOH TIP . 
G 6 HOH A 25 671 58 HOH TIP . 
G 6 HOH A 26 672 60 HOH TIP . 
G 6 HOH A 27 673 65 HOH TIP . 
G 6 HOH A 28 674 66 HOH TIP . 
G 6 HOH A 29 675 68 HOH TIP . 
G 6 HOH A 30 676 70 HOH TIP . 
G 6 HOH A 31 677 71 HOH TIP . 
G 6 HOH A 32 678 75 HOH TIP . 
G 6 HOH A 33 679 78 HOH TIP . 
G 6 HOH A 34 680 83 HOH TIP . 
G 6 HOH A 35 681 88 HOH TIP . 
H 6 HOH B 1 901 1 HOH TIP . 
H 6 HOH B 2 902 2 HOH TIP . 
H 6 HOH B 3 903 3 HOH TIP . 
H 6 HOH B 4 904 4 HOH TIP . 
H 6 HOH B 5 905 5 HOH TIP . 
H 6 HOH B 6 906 6 HOH TIP . 
H 6 HOH B 7 907 7 HOH TIP . 
H 6 HOH B 8 908 8 HOH TIP . 
H 6 HOH B 9 909 9 HOH TIP . 
H 6 HOH B 10 910 10 HOH TIP . 
H 6 HOH B 11 911 11 HOH TIP . 
H 6 HOH B 12 912 14 HOH TIP . 
H 6 HOH B 13 913 15 HOH TIP . 
H 6 HOH B 14 914 16 HOH TIP . 
H 6 HOH B 15 915 18 HOH TIP . 
H 6 HOH B 16 916 19 HOH TIP . 
H 6 HOH B 17 917 20 HOH TIP . 
H 6 HOH B 18 918 21 HOH TIP . 
H 6 HOH B 19 919 26 HOH TIP . 
H 6 HOH B 20 920 29 HOH TIP . 
H 6 HOH B 21 921 34 HOH TIP . 
H 6 HOH B 22 922 36 HOH TIP . 
H 6 HOH B 23 923 38 HOH TIP . 
H 6 HOH B 24 924 39 HOH TIP . 
H 6 HOH B 25 925 40 HOH TIP . 
H 6 HOH B 26 926 42 HOH TIP . 
H 6 HOH B 27 927 45 HOH TIP . 
H 6 HOH B 28 928 48 HOH TIP . 
H 6 HOH B 29 929 49 HOH TIP . 
H 6 HOH B 30 930 50 HOH TIP . 
H 6 HOH B 31 931 52 HOH TIP . 
H 6 HOH B 32 932 54 HOH TIP . 
H 6 HOH B 33 933 57 HOH TIP . 
H 6 HOH B 34 934 59 HOH TIP . 
H 6 HOH B 35 935 61 HOH TIP . 
H 6 HOH B 36 936 62 HOH TIP . 
H 6 HOH B 37 937 63 HOH TIP . 
H 6 HOH B 38 938 64 HOH TIP . 
H 6 HOH B 39 939 67 HOH TIP . 
H 6 HOH B 40 940 69 HOH TIP . 
H 6 HOH B 41 941 72 HOH TIP . 
H 6 HOH B 42 942 73 HOH TIP . 
H 6 HOH B 43 943 74 HOH TIP . 
H 6 HOH B 44 944 76 HOH TIP . 
H 6 HOH B 45 945 77 HOH TIP . 
H 6 HOH B 46 946 79 HOH TIP . 
H 6 HOH B 47 947 80 HOH TIP . 
H 6 HOH B 48 948 81 HOH TIP . 
H 6 HOH B 49 949 82 HOH TIP . 
H 6 HOH B 50 950 84 HOH TIP . 
H 6 HOH B 51 951 85 HOH TIP . 
H 6 HOH B 52 952 86 HOH TIP . 
H 6 HOH B 53 953 87 HOH TIP . 
H 6 HOH B 54 954 89 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PHS . . . C 2 19.363 60.187 38.021 0.52 43.25 ? P PHS 138 A 1 
HETATM 2 O O1P PHS . . . C 2 19.666 59.964 36.54 0.52 43.43 ? O1P PHS 138 A 1 
HETATM 3 O O2P PHS . . . C 2 20.591 60.402 38.866 0.52 41.09 ? O2P PHS 138 A 1 
HETATM 4 O O3P PHS . . . C 2 18.338 61.335 38.192 0.52 42.33 ? O3P PHS 138 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           41 
_model_server_stats.create_model_time_ms    86 
_model_server_stats.query_time_ms           470 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#