data_1WKW # _model_server_result.job_id AcKYN001beslT9xpHpNBjw _model_server_result.datetime_utc '2024-11-19 09:51:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1wkw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1000}' # _entry.id 1WKW # _exptl.entry_id 1WKW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 787.441 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1WKW _cell.length_a 87.77 _cell.length_b 87.77 _cell.length_c 38.36 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WKW _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N10 O17 P3 1' _chem_comp.formula_weight 787.441 _chem_comp.id GTA _chem_comp.mon_nstd_flag . _chem_comp.name "P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 7-METHYL-GPPPA # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C2 GTA sing 129 n n N2 HN21 GTA sing 130 n n N2 HN22 GTA sing 131 n n O6 C6 GTA doub 132 n n C6 C5 GTA sing 133 n n C6 N1 GTA sing 134 n n C5 N7 GTA sing 135 n y C5 C4 GTA doub 136 n y N7 C7 GTA sing 137 n n N7 C8 GTA doub 138 n y C7 H71 GTA sing 139 n n C7 H72 GTA sing 140 n n C7 H73 GTA sing 141 n n C8 N9 GTA sing 142 n y C8 H8 GTA sing 143 n n N9 C4 GTA sing 144 n y N9 C1A GTA sing 145 n n C4 N3 GTA sing 146 n n N3 C2 GTA doub 147 n n C2 N1 GTA sing 148 n n N1 HN1 GTA sing 149 n n O3A C3A GTA sing 150 n n O3A HO3A GTA sing 151 n n C1A C2A GTA sing 152 n n C1A O4A GTA sing 153 n n C1A H1A GTA sing 154 n n C2A C3A GTA sing 155 n n C2A O2A GTA sing 156 n n C2A H2A GTA sing 157 n n C3A C4A GTA sing 158 n n C3A H3A GTA sing 159 n n C4A C5A GTA sing 160 n n C4A O4A GTA sing 161 n n C4A H4A GTA sing 162 n n C5A O15 GTA sing 163 n n C5A H5A1 GTA sing 164 n n C5A H5A2 GTA sing 165 n n O2A HO2A GTA sing 166 n n P1 O11 GTA doub 167 n n P1 O12 GTA sing 168 n n P1 O13 GTA sing 169 n n P1 O15 GTA sing 170 n n O12 H122 GTA sing 171 n n O13 P2 GTA sing 172 n n P2 O22 GTA sing 173 n n P2 O21 GTA doub 174 n n P2 O23 GTA sing 175 n n O22 H222 GTA sing 176 n n O23 P3 GTA sing 177 n n P3 O32 GTA sing 178 n n P3 O31 GTA doub 179 n n P3 O33 GTA sing 180 n n O32 H322 GTA sing 181 n n O33 C5B GTA sing 182 n n C5B C4B GTA sing 183 n n C5B H5B1 GTA sing 184 n n C5B H5B2 GTA sing 185 n n C4B O4B GTA sing 186 n n C4B C3B GTA sing 187 n n C4B H4B GTA sing 188 n n O4B C1B GTA sing 189 n n C3B O3B GTA sing 190 n n C3B C2B GTA sing 191 n n C3B H3B GTA sing 192 n n O3B HO3B GTA sing 193 n n C2B O2B GTA sing 194 n n C2B C1B GTA sing 195 n n C2B H2B GTA sing 196 n n O2B HO2B GTA sing 197 n n C1B N9C GTA sing 198 n n C1B H1B GTA sing 199 n n N9C C8C GTA sing 200 n y N9C C4C GTA sing 201 n y C8C N7C GTA doub 202 n y C8C H8C GTA sing 203 n n N7C C5C GTA sing 204 n y C5C C6C GTA doub 205 n y C5C C4C GTA sing 206 n y C6C N6C GTA sing 207 n n C6C N1C GTA sing 208 n y N6C HN61 GTA sing 209 n n N6C HN62 GTA sing 210 n n N1C C2C GTA doub 211 n y C2C N3C GTA sing 212 n y C2C H2C GTA sing 213 n n N3C C4C GTA doub 214 n y # _atom_sites.entry_id 1WKW _atom_sites.fract_transf_matrix[1][1] 0.011393 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011393 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026069 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GTA A 1 1000 1000 GTA GTA . D 4 HOH A 1 1001 1 HOH WAT . D 4 HOH A 2 1002 2 HOH WAT . D 4 HOH A 3 1003 3 HOH WAT . D 4 HOH A 4 1004 4 HOH WAT . D 4 HOH A 5 1005 5 HOH WAT . D 4 HOH A 6 1006 6 HOH WAT . D 4 HOH A 7 1007 7 HOH WAT . D 4 HOH A 8 1008 8 HOH WAT . D 4 HOH A 9 1009 9 HOH WAT . D 4 HOH A 10 1010 10 HOH WAT . D 4 HOH A 11 1011 11 HOH WAT . D 4 HOH A 12 1012 12 HOH WAT . D 4 HOH A 13 1013 13 HOH WAT . D 4 HOH A 14 1014 14 HOH WAT . D 4 HOH A 15 1015 15 HOH WAT . D 4 HOH A 16 1016 16 HOH WAT . D 4 HOH A 17 1017 17 HOH WAT . D 4 HOH A 18 1018 18 HOH WAT . D 4 HOH A 19 1019 19 HOH WAT . D 4 HOH A 20 1020 20 HOH WAT . D 4 HOH A 21 1021 21 HOH WAT . D 4 HOH A 22 1022 22 HOH WAT . D 4 HOH A 23 1023 23 HOH WAT . D 4 HOH A 24 1024 24 HOH WAT . D 4 HOH A 25 1025 25 HOH WAT . D 4 HOH A 26 1026 26 HOH WAT . D 4 HOH A 27 1027 27 HOH WAT . D 4 HOH A 28 1028 28 HOH WAT . D 4 HOH A 29 1029 29 HOH WAT . D 4 HOH A 30 1030 30 HOH WAT . D 4 HOH A 31 1031 31 HOH WAT . D 4 HOH A 32 1032 32 HOH WAT . D 4 HOH A 33 1033 33 HOH WAT . D 4 HOH A 34 1034 34 HOH WAT . D 4 HOH A 35 1035 35 HOH WAT . D 4 HOH A 36 1036 36 HOH WAT . D 4 HOH A 37 1037 37 HOH WAT . D 4 HOH A 38 1038 38 HOH WAT . D 4 HOH A 39 1039 39 HOH WAT . D 4 HOH A 40 1040 40 HOH WAT . D 4 HOH A 41 1041 41 HOH WAT . D 4 HOH A 42 1042 42 HOH WAT . D 4 HOH A 43 1043 43 HOH WAT . D 4 HOH A 44 1044 44 HOH WAT . D 4 HOH A 45 1045 45 HOH WAT . D 4 HOH A 46 1046 46 HOH WAT . D 4 HOH A 47 1047 47 HOH WAT . D 4 HOH A 48 1048 48 HOH WAT . D 4 HOH A 49 1049 49 HOH WAT . D 4 HOH A 50 1050 50 HOH WAT . D 4 HOH A 51 1051 51 HOH WAT . D 4 HOH A 52 1052 52 HOH WAT . D 4 HOH A 53 1053 53 HOH WAT . D 4 HOH A 54 1054 54 HOH WAT . D 4 HOH A 55 1055 55 HOH WAT . D 4 HOH A 56 1056 56 HOH WAT . D 4 HOH A 57 1057 57 HOH WAT . D 4 HOH A 58 1058 58 HOH WAT . D 4 HOH A 59 1059 59 HOH WAT . D 4 HOH A 60 1060 60 HOH WAT . D 4 HOH A 61 1061 61 HOH WAT . D 4 HOH A 62 1062 62 HOH WAT . D 4 HOH A 63 1063 63 HOH WAT . D 4 HOH A 64 1064 64 HOH WAT . D 4 HOH A 65 1065 66 HOH WAT . D 4 HOH A 66 1066 67 HOH WAT . D 4 HOH A 67 1067 68 HOH WAT . D 4 HOH A 68 1068 69 HOH WAT . D 4 HOH A 69 1069 70 HOH WAT . D 4 HOH A 70 1070 71 HOH WAT . D 4 HOH A 71 1071 72 HOH WAT . D 4 HOH A 72 1072 73 HOH WAT . D 4 HOH A 73 1073 74 HOH WAT . D 4 HOH A 74 1074 75 HOH WAT . D 4 HOH A 75 1075 76 HOH WAT . D 4 HOH A 76 1076 77 HOH WAT . D 4 HOH A 77 1077 78 HOH WAT . D 4 HOH A 78 1078 79 HOH WAT . D 4 HOH A 79 1079 80 HOH WAT . D 4 HOH A 80 1080 81 HOH WAT . D 4 HOH A 81 1081 83 HOH WAT . D 4 HOH A 82 1082 84 HOH WAT . D 4 HOH A 83 1083 85 HOH WAT . D 4 HOH A 84 1084 86 HOH WAT . D 4 HOH A 85 1085 87 HOH WAT . D 4 HOH A 86 1086 89 HOH WAT . D 4 HOH A 87 1087 90 HOH WAT . E 4 HOH B 1 67 65 HOH WAT . E 4 HOH B 2 68 82 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N2 GTA . . . C 3 101.23 -71.188 14.506 1 5.03 ? N2 GTA 1000 A 1 HETATM 2 O O6 GTA . . . C 3 96.722 -69.503 14.096 1 8.85 ? O6 GTA 1000 A 1 HETATM 3 C C6 GTA . . . C 3 97.781 -69.833 13.528 1 8.21 ? C6 GTA 1000 A 1 HETATM 4 C C5 GTA . . . C 3 97.984 -69.746 11.977 1 5.77 ? C5 GTA 1000 A 1 HETATM 5 N N7 GTA . . . C 3 97.095 -69.324 10.993 1 7.1 ? N7 GTA 1000 A 1 HETATM 6 C C7 GTA . . . C 3 95.705 -68.829 11.053 1 1.96 ? C7 GTA 1000 A 1 HETATM 7 C C8 GTA . . . C 3 97.948 -69.516 9.902 1 6.37 ? C8 GTA 1000 A 1 HETATM 8 N N9 GTA . . . C 3 99.301 -70.023 10.08 1 9.78 ? N9 GTA 1000 A 1 HETATM 9 C C4 GTA . . . C 3 99.296 -70.166 11.442 1 9.32 ? C4 GTA 1000 A 1 HETATM 10 N N3 GTA . . . C 3 100.333 -70.639 12.383 1 9.47 ? N3 GTA 1000 A 1 HETATM 11 C C2 GTA . . . C 3 100.177 -70.722 13.7 1 7.67 ? C2 GTA 1000 A 1 HETATM 12 N N1 GTA . . . C 3 98.876 -70.308 14.284 1 5.27 ? N1 GTA 1000 A 1 HETATM 13 O O3A GTA . . . C 3 100.19 -73.131 6.853 1 11.21 ? O3A GTA 1000 A 1 HETATM 14 C C1A GTA . . . C 3 100.334 -70.3 9.165 1 11.51 ? C1A GTA 1000 A 1 HETATM 15 C C2A GTA . . . C 3 100.598 -71.783 8.868 1 12.12 ? C2A GTA 1000 A 1 HETATM 16 C C3A GTA . . . C 3 99.831 -71.952 7.583 1 12.34 ? C3A GTA 1000 A 1 HETATM 17 C C4A GTA . . . C 3 100.07 -70.593 6.866 1 12.07 ? C4A GTA 1000 A 1 HETATM 18 C C5A GTA . . . C 3 99.293 -69.974 5.645 1 14.81 ? C5A GTA 1000 A 1 HETATM 19 O O4A GTA . . . C 3 100.031 -69.624 7.906 1 13.04 ? O4A GTA 1000 A 1 HETATM 20 O O2A GTA . . . C 3 102.017 -71.937 8.682 1 9.78 ? O2A GTA 1000 A 1 HETATM 21 P P1 GTA . . . C 3 96.821 -68.826 5.809 1 20.81 ? P1 GTA 1000 A 1 HETATM 22 O O11 GTA . . . C 3 95.482 -69.096 6.537 1 21.41 ? O11 GTA 1000 A 1 HETATM 23 O O12 GTA . . . C 3 97.297 -67.342 6.02 1 20.74 ? O12 GTA 1000 A 1 HETATM 24 O O13 GTA . . . C 3 96.342 -69.368 4.586 1 24.22 ? O13 GTA 1000 A 1 HETATM 25 O O15 GTA . . . C 3 97.913 -69.969 6.172 1 19.35 ? O15 GTA 1000 A 1 HETATM 26 P P2 GTA . . . C 3 97.016 -68.957 3.09 1 27.43 ? P2 GTA 1000 A 1 HETATM 27 O O22 GTA . . . C 3 98.187 -67.954 3.225 1 28.56 ? O22 GTA 1000 A 1 HETATM 28 O O21 GTA . . . C 3 95.96 -68.333 2.162 1 26.92 ? O21 GTA 1000 A 1 HETATM 29 O O23 GTA . . . C 3 97.411 -69.805 2.176 1 33.63 ? O23 GTA 1000 A 1 HETATM 30 P P3 GTA . . . C 3 97.398 -71.356 2.134 1 36.68 ? P3 GTA 1000 A 1 HETATM 31 O O32 GTA . . . C 3 97.969 -71.756 0.87 1 35.54 ? O32 GTA 1000 A 1 HETATM 32 O O31 GTA . . . C 3 95.965 -71.92 2.206 1 36.88 ? O31 GTA 1000 A 1 HETATM 33 O O33 GTA . . . C 3 97.954 -72.508 3.117 1 38.38 ? O33 GTA 1000 A 1 HETATM 34 C C5B GTA . . . C 3 97.478 -73.106 4.549 1 41.73 ? C5B GTA 1000 A 1 HETATM 35 C C4B GTA . . . C 3 97.124 -74.396 4.434 1 44.4 ? C4B GTA 1000 A 1 HETATM 36 O O4B GTA . . . C 3 98.172 -75.328 3.935 1 45.34 ? O4B GTA 1000 A 1 HETATM 37 C C3B GTA . . . C 3 96.65 -75.15 5.693 1 44.85 ? C3B GTA 1000 A 1 HETATM 38 O O3B GTA . . . C 3 95.351 -74.707 6.22 1 46.14 ? O3B GTA 1000 A 1 HETATM 39 C C2B GTA . . . C 3 96.686 -76.627 5.299 1 45.58 ? C2B GTA 1000 A 1 HETATM 40 O O2B GTA . . . C 3 95.42 -77.075 4.664 1 45.58 ? O2B GTA 1000 A 1 HETATM 41 C C1B GTA . . . C 3 97.955 -76.69 4.436 1 45.53 ? C1B GTA 1000 A 1 HETATM 42 N N9C GTA . . . C 3 99.293 -77.01 5.164 1 46.5 ? N9C GTA 1000 A 1 HETATM 43 C C8C GTA . . . C 3 100.209 -76.282 5.924 1 46.61 ? C8C GTA 1000 A 1 HETATM 44 N N7C GTA . . . C 3 101.198 -77.061 6.315 1 46.44 ? N7C GTA 1000 A 1 HETATM 45 C C5C GTA . . . C 3 101.037 -78.449 5.833 1 46.89 ? C5C GTA 1000 A 1 HETATM 46 C C6C GTA . . . C 3 101.672 -79.65 5.895 1 47.22 ? C6C GTA 1000 A 1 HETATM 47 N N6C GTA . . . C 3 102.78 -79.852 6.519 1 46.9 ? N6C GTA 1000 A 1 HETATM 48 N N1C GTA . . . C 3 100.988 -80.734 5.175 1 47.74 ? N1C GTA 1000 A 1 HETATM 49 C C2C GTA . . . C 3 99.747 -80.64 4.441 1 47.24 ? C2C GTA 1000 A 1 HETATM 50 N N3C GTA . . . C 3 99.096 -79.414 4.38 1 47.16 ? N3C GTA 1000 A 1 HETATM 51 C C4C GTA . . . C 3 99.749 -78.295 5.089 1 47.04 ? C4C GTA 1000 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 51 #