data_1WLA # _model_server_result.job_id 4nT22bdB-cjsDJZZtyBX3Q _model_server_result.datetime_utc '2024-11-08 21:12:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1wla # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":154}' # _entry.id 1WLA # _exptl.entry_id 1WLA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.19 _cell.angle_gamma 90 _cell.entry_id 1WLA _cell.length_a 64.296 _cell.length_b 28.966 _cell.length_c 35.933 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WLA _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 C FE HEM . A HEM 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc2 C FE HEM . A HEM 154 1_555 D O HOH . A HOH 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 1WLA _atom_sites.fract_transf_matrix[1][1] 0.015553 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004812 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034523 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029131 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 155 155 SO4 SO4 . C 3 HEM A 1 154 154 HEM HEM . D 4 HOH A 1 156 156 HOH HOH . D 4 HOH A 2 157 157 HOH HOH . D 4 HOH A 3 158 158 HOH HOH . D 4 HOH A 4 159 159 HOH HOH . D 4 HOH A 5 160 160 HOH HOH . D 4 HOH A 6 161 161 HOH HOH . D 4 HOH A 7 162 162 HOH HOH . D 4 HOH A 8 163 163 HOH HOH . D 4 HOH A 9 164 164 HOH HOH . D 4 HOH A 10 165 165 HOH HOH . D 4 HOH A 11 166 166 HOH HOH . D 4 HOH A 12 167 167 HOH HOH . D 4 HOH A 13 168 168 HOH HOH . D 4 HOH A 14 169 169 HOH HOH . D 4 HOH A 15 170 170 HOH HOH . D 4 HOH A 16 171 171 HOH HOH . D 4 HOH A 17 172 172 HOH HOH . D 4 HOH A 18 173 173 HOH HOH . D 4 HOH A 19 174 174 HOH HOH . D 4 HOH A 20 175 175 HOH HOH . D 4 HOH A 21 176 176 HOH HOH . D 4 HOH A 22 177 177 HOH HOH . D 4 HOH A 23 178 178 HOH HOH . D 4 HOH A 24 179 179 HOH HOH . D 4 HOH A 25 180 180 HOH HOH . D 4 HOH A 26 181 181 HOH HOH . D 4 HOH A 27 182 182 HOH HOH . D 4 HOH A 28 183 183 HOH HOH . D 4 HOH A 29 184 184 HOH HOH . D 4 HOH A 30 185 185 HOH HOH . D 4 HOH A 31 186 186 HOH HOH . D 4 HOH A 32 187 187 HOH HOH . D 4 HOH A 33 188 188 HOH HOH . D 4 HOH A 34 189 189 HOH HOH . D 4 HOH A 35 190 190 HOH HOH . D 4 HOH A 36 191 191 HOH HOH . D 4 HOH A 37 192 192 HOH HOH . D 4 HOH A 38 193 193 HOH HOH . D 4 HOH A 39 194 194 HOH HOH . D 4 HOH A 40 195 195 HOH HOH . D 4 HOH A 41 196 196 HOH HOH . D 4 HOH A 42 197 197 HOH HOH . D 4 HOH A 43 198 198 HOH HOH . D 4 HOH A 44 199 199 HOH HOH . D 4 HOH A 45 200 200 HOH HOH . D 4 HOH A 46 201 201 HOH HOH . D 4 HOH A 47 202 202 HOH HOH . D 4 HOH A 48 203 203 HOH HOH . D 4 HOH A 49 204 204 HOH HOH . D 4 HOH A 50 205 205 HOH HOH . D 4 HOH A 51 206 206 HOH HOH . D 4 HOH A 52 207 207 HOH HOH . D 4 HOH A 53 208 208 HOH HOH . D 4 HOH A 54 209 209 HOH HOH . D 4 HOH A 55 210 210 HOH HOH . D 4 HOH A 56 211 211 HOH HOH . D 4 HOH A 57 212 212 HOH HOH . D 4 HOH A 58 213 213 HOH HOH . D 4 HOH A 59 214 214 HOH HOH . D 4 HOH A 60 215 215 HOH HOH . D 4 HOH A 61 216 216 HOH HOH . D 4 HOH A 62 217 217 HOH HOH . D 4 HOH A 63 218 218 HOH HOH . D 4 HOH A 64 219 219 HOH HOH . D 4 HOH A 65 220 220 HOH HOH . D 4 HOH A 66 221 221 HOH HOH . D 4 HOH A 67 222 222 HOH HOH . D 4 HOH A 68 223 223 HOH HOH . D 4 HOH A 69 224 224 HOH HOH . D 4 HOH A 70 225 225 HOH HOH . D 4 HOH A 71 226 226 HOH HOH . D 4 HOH A 72 227 227 HOH HOH . D 4 HOH A 73 228 228 HOH HOH . D 4 HOH A 74 229 229 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 3 15.588 32.628 5.174 1 6.21 ? CHA HEM 154 A 1 HETATM 2 C CHB HEM . . . C 3 13.811 29.4 8.339 1 4 ? CHB HEM 154 A 1 HETATM 3 C CHC HEM . . . C 3 13.272 26.262 4.745 1 5.76 ? CHC HEM 154 A 1 HETATM 4 C CHD HEM . . . C 3 15.297 29.322 1.635 1 5.25 ? CHD HEM 154 A 1 HETATM 5 C C1A HEM . . . C 3 15.063 32.06 6.287 1 5.31 ? C1A HEM 154 A 1 HETATM 6 C C2A HEM . . . C 3 14.942 32.702 7.588 1 6.1 ? C2A HEM 154 A 1 HETATM 7 C C3A HEM . . . C 3 14.439 31.822 8.452 1 6.13 ? C3A HEM 154 A 1 HETATM 8 C C4A HEM . . . C 3 14.294 30.555 7.752 1 6.66 ? C4A HEM 154 A 1 HETATM 9 C CMA HEM . . . C 3 14.032 32.046 9.925 1 6.44 ? CMA HEM 154 A 1 HETATM 10 C CAA HEM . . . C 3 15.276 34.203 7.807 1 7.68 ? CAA HEM 154 A 1 HETATM 11 C CBA HEM . . . C 3 14.04 35.122 8.07 1 8.91 ? CBA HEM 154 A 1 HETATM 12 C CGA HEM . . . C 3 13.136 35.094 6.798 1 13.07 ? CGA HEM 154 A 1 HETATM 13 O O1A HEM . . . C 3 13.715 35.458 5.722 1 10.57 ? O1A HEM 154 A 1 HETATM 14 O O2A HEM . . . C 3 11.93 34.706 6.97 1 11.57 ? O2A HEM 154 A 1 HETATM 15 C C1B HEM . . . C 3 13.465 28.266 7.635 1 4.2 ? C1B HEM 154 A 1 HETATM 16 C C2B HEM . . . C 3 12.805 27.132 8.183 1 5.65 ? C2B HEM 154 A 1 HETATM 17 C C3B HEM . . . C 3 12.66 26.246 7.213 1 6.72 ? C3B HEM 154 A 1 HETATM 18 C C4B HEM . . . C 3 13.23 26.819 6.008 1 7.35 ? C4B HEM 154 A 1 HETATM 19 C CMB HEM . . . C 3 12.415 27.006 9.729 1 5.51 ? CMB HEM 154 A 1 HETATM 20 C CAB HEM . . . C 3 12.012 24.861 7.24 1 8.3 ? CAB HEM 154 A 1 HETATM 21 C CBB HEM . . . C 3 12.622 23.837 8.173 1 11.44 ? CBB HEM 154 A 1 HETATM 22 C C1C HEM . . . C 3 13.818 26.753 3.576 1 5.77 ? C1C HEM 154 A 1 HETATM 23 C C2C HEM . . . C 3 14.056 26.021 2.342 1 7.47 ? C2C HEM 154 A 1 HETATM 24 C C3C HEM . . . C 3 14.578 26.91 1.457 1 6.7 ? C3C HEM 154 A 1 HETATM 25 C C4C HEM . . . C 3 14.768 28.187 2.197 1 5.85 ? C4C HEM 154 A 1 HETATM 26 C CMC HEM . . . C 3 13.611 24.569 2.109 1 6.41 ? CMC HEM 154 A 1 HETATM 27 C CAC HEM . . . C 3 15.052 26.705 0.006 1 5.15 ? CAC HEM 154 A 1 HETATM 28 C CBC HEM . . . C 3 15.228 25.313 -0.476 1 7 ? CBC HEM 154 A 1 HETATM 29 C C1D HEM . . . C 3 15.563 30.474 2.339 1 5.87 ? C1D HEM 154 A 1 HETATM 30 C C2D HEM . . . C 3 16.215 31.63 1.77 1 6.63 ? C2D HEM 154 A 1 HETATM 31 C C3D HEM . . . C 3 16.283 32.542 2.76 1 8.11 ? C3D HEM 154 A 1 HETATM 32 C C4D HEM . . . C 3 15.655 31.995 3.938 1 6.87 ? C4D HEM 154 A 1 HETATM 33 C CMD HEM . . . C 3 16.664 31.794 0.307 1 5.99 ? CMD HEM 154 A 1 HETATM 34 C CAD HEM . . . C 3 16.993 33.922 2.729 1 7.65 ? CAD HEM 154 A 1 HETATM 35 C CBD HEM . . . C 3 18.463 33.647 3.152 1 12.89 ? CBD HEM 154 A 1 HETATM 36 C CGD HEM . . . C 3 19.463 34.748 3.141 1 17.77 ? CGD HEM 154 A 1 HETATM 37 O O1D HEM . . . C 3 19.828 35.239 2.049 1 20.4 ? O1D HEM 154 A 1 HETATM 38 O O2D HEM . . . C 3 19.944 35.134 4.253 1 22.43 ? O2D HEM 154 A 1 HETATM 39 N NA HEM . . . C 3 14.684 30.73 6.435 1 5.05 ? NA HEM 154 A 1 HETATM 40 N NB HEM . . . C 3 13.729 28.089 6.278 1 4.23 ? NB HEM 154 A 1 HETATM 41 N NC HEM . . . C 3 14.31 28.051 3.454 1 5.34 ? NC HEM 154 A 1 HETATM 42 N ND HEM . . . C 3 15.218 30.716 3.656 1 6.24 ? ND HEM 154 A 1 HETATM 43 FE FE HEM . . . C 3 14.394 29.409 4.96 1 8.04 ? FE HEM 154 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #