data_1WM1 # _model_server_result.job_id OrWyyPhZIR8wZrpjQ24qjA _model_server_result.datetime_utc '2024-11-27 14:43:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1wm1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 1WM1 # _exptl.entry_id 1WM1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 223.272 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5-TERT-BUTYL-1,3,4-OXADIAZOL-2-YL)[(2R)-PYRROLIDIN-2-YL]METHANONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1WM1 _cell.length_a 65.445 _cell.length_b 65.445 _cell.length_c 169.071 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WM1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H17 N3 O2' _chem_comp.formula_weight 223.272 _chem_comp.id PTB _chem_comp.mon_nstd_flag . _chem_comp.name (5-TERT-BUTYL-1,3,4-OXADIAZOL-2-YL)[(2R)-PYRROLIDIN-2-YL]METHANONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2-PROLYL-5-TERT-BUTYL-[1,3,4]OXADIAZOLE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA PTB sing 277 n n N CD PTB sing 278 n n N HN PTB sing 279 n n CA C PTB sing 280 n n CA CB PTB sing 281 n n CA HA PTB sing 282 n n C O PTB doub 283 n n C C2 PTB sing 284 n n CB CG PTB sing 285 n n CB HB1 PTB sing 286 n n CB HB2 PTB sing 287 n n CG CD PTB sing 288 n n CG HG1 PTB sing 289 n n CG HG2 PTB sing 290 n n CD HD1 PTB sing 291 n n CD HD2 PTB sing 292 n n C2 N3 PTB doub 293 n y C2 O1 PTB sing 294 n y N3 N4 PTB sing 295 n y N4 C5 PTB doub 296 n y C5 O1 PTB sing 297 n y C5 C6 PTB sing 298 n n C6 C7 PTB sing 299 n n C6 C8 PTB sing 300 n n C6 C9 PTB sing 301 n n C7 H71 PTB sing 302 n n C7 H72 PTB sing 303 n n C7 H73 PTB sing 304 n n C8 H81 PTB sing 305 n n C8 H82 PTB sing 306 n n C8 H83 PTB sing 307 n n C9 H91 PTB sing 308 n n C9 H92 PTB sing 309 n n C9 H93 PTB sing 310 n n # _atom_sites.entry_id 1WM1 _atom_sites.fract_transf_matrix[1][1] 0.01528 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01528 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005915 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PTB A 1 401 401 PTB PTB . C 3 HOH A 1 402 1 HOH HOH . C 3 HOH A 2 403 2 HOH HOH . C 3 HOH A 3 404 3 HOH HOH . C 3 HOH A 4 405 4 HOH HOH . C 3 HOH A 5 406 5 HOH HOH . C 3 HOH A 6 407 6 HOH HOH . C 3 HOH A 7 408 7 HOH HOH . C 3 HOH A 8 409 8 HOH HOH . C 3 HOH A 9 410 9 HOH HOH . C 3 HOH A 10 411 10 HOH HOH . C 3 HOH A 11 412 11 HOH HOH . C 3 HOH A 12 413 12 HOH HOH . C 3 HOH A 13 414 13 HOH HOH . C 3 HOH A 14 415 14 HOH HOH . C 3 HOH A 15 416 15 HOH HOH . C 3 HOH A 16 417 16 HOH HOH . C 3 HOH A 17 418 17 HOH HOH . C 3 HOH A 18 419 18 HOH HOH . C 3 HOH A 19 420 19 HOH HOH . C 3 HOH A 20 421 20 HOH HOH . C 3 HOH A 21 422 21 HOH HOH . C 3 HOH A 22 423 22 HOH HOH . C 3 HOH A 23 424 23 HOH HOH . C 3 HOH A 24 425 24 HOH HOH . C 3 HOH A 25 426 25 HOH HOH . C 3 HOH A 26 427 26 HOH HOH . C 3 HOH A 27 428 27 HOH HOH . C 3 HOH A 28 429 28 HOH HOH . C 3 HOH A 29 430 29 HOH HOH . C 3 HOH A 30 431 30 HOH HOH . C 3 HOH A 31 432 31 HOH HOH . C 3 HOH A 32 433 32 HOH HOH . C 3 HOH A 33 434 33 HOH HOH . C 3 HOH A 34 435 34 HOH HOH . C 3 HOH A 35 436 35 HOH HOH . C 3 HOH A 36 437 36 HOH HOH . C 3 HOH A 37 438 37 HOH HOH . C 3 HOH A 38 439 38 HOH HOH . C 3 HOH A 39 440 39 HOH HOH . C 3 HOH A 40 441 40 HOH HOH . C 3 HOH A 41 442 41 HOH HOH . C 3 HOH A 42 443 42 HOH HOH . C 3 HOH A 43 444 43 HOH HOH . C 3 HOH A 44 445 44 HOH HOH . C 3 HOH A 45 446 45 HOH HOH . C 3 HOH A 46 447 46 HOH HOH . C 3 HOH A 47 448 47 HOH HOH . C 3 HOH A 48 449 48 HOH HOH . C 3 HOH A 49 450 49 HOH HOH . C 3 HOH A 50 451 50 HOH HOH . C 3 HOH A 51 452 51 HOH HOH . C 3 HOH A 52 453 52 HOH HOH . C 3 HOH A 53 454 53 HOH HOH . C 3 HOH A 54 455 54 HOH HOH . C 3 HOH A 55 456 55 HOH HOH . C 3 HOH A 56 457 56 HOH HOH . C 3 HOH A 57 458 57 HOH HOH . C 3 HOH A 58 459 58 HOH HOH . C 3 HOH A 59 460 59 HOH HOH . C 3 HOH A 60 461 60 HOH HOH . C 3 HOH A 61 462 61 HOH HOH . C 3 HOH A 62 463 62 HOH HOH . C 3 HOH A 63 464 63 HOH HOH . C 3 HOH A 64 465 64 HOH HOH . C 3 HOH A 65 466 65 HOH HOH . C 3 HOH A 66 467 66 HOH HOH . C 3 HOH A 67 468 67 HOH HOH . C 3 HOH A 68 469 68 HOH HOH . C 3 HOH A 69 470 69 HOH HOH . C 3 HOH A 70 471 70 HOH HOH . C 3 HOH A 71 472 71 HOH HOH . C 3 HOH A 72 473 72 HOH HOH . C 3 HOH A 73 474 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N PTB . . . B 2 18.68 -0.476 -9.324 1 54.14 ? N PTB 401 A 1 HETATM 2 C CA PTB . . . B 2 19.246 0.236 -8.128 1 54.6 ? CA PTB 401 A 1 HETATM 3 C C PTB . . . B 2 20.736 -0.018 -7.967 1 55.95 ? C PTB 401 A 1 HETATM 4 O O PTB . . . B 2 21.18 -1.105 -7.648 1 52.27 ? O PTB 401 A 1 HETATM 5 C CB PTB . . . B 2 18.413 -0.173 -6.912 1 55.23 ? CB PTB 401 A 1 HETATM 6 C CG PTB . . . B 2 17.09 -0.647 -7.463 1 53.76 ? CG PTB 401 A 1 HETATM 7 C CD PTB . . . B 2 17.356 -1.06 -8.904 1 53.85 ? CD PTB 401 A 1 HETATM 8 C C2 PTB . . . B 2 21.584 1.139 -8.195 1 57.29 ? C2 PTB 401 A 1 HETATM 9 N N3 PTB . . . B 2 21.276 2.371 -8.644 1 60.82 ? N3 PTB 401 A 1 HETATM 10 N N4 PTB . . . B 2 22.368 3.104 -8.682 1 63.07 ? N4 PTB 401 A 1 HETATM 11 C C5 PTB . . . B 2 23.43 2.372 -8.256 1 60.29 ? C5 PTB 401 A 1 HETATM 12 O O1 PTB . . . B 2 22.974 1.076 -7.925 1 57.46 ? O1 PTB 401 A 1 HETATM 13 C C6 PTB . . . B 2 24.884 2.716 -8.101 1 61.19 ? C6 PTB 401 A 1 HETATM 14 C C7 PTB . . . B 2 25.001 4.023 -7.318 1 62.45 ? C7 PTB 401 A 1 HETATM 15 C C8 PTB . . . B 2 25.506 2.894 -9.481 1 62.48 ? C8 PTB 401 A 1 HETATM 16 C C9 PTB . . . B 2 25.6 1.592 -7.354 1 60.53 ? C9 PTB 401 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 16 #