data_1WNZ # _model_server_result.job_id quNto5oRhFWcHy_VStRbOg _model_server_result.datetime_utc '2024-11-15 02:57:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1wnz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 1WNZ # _exptl.entry_id 1WNZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 365.388 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-(L-VALYL)AMINO-2'-DEOXYADENOSINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1WNZ _cell.length_a 72.594 _cell.length_b 72.594 _cell.length_c 83.683 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WNZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H23 N7 O4' _chem_comp.formula_weight 365.388 _chem_comp.id 2VA _chem_comp.mon_nstd_flag n _chem_comp.name "2'-(L-VALYL)AMINO-2'-DEOXYADENOSINE" _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CG2 CB 2VA sing 1 n n CG2 HG21 2VA sing 2 n n CG2 HG22 2VA sing 3 n n CG2 HG23 2VA sing 4 n n CB CG1 2VA sing 5 n n CB CA 2VA sing 6 n n CB HB 2VA sing 7 n n CG1 HG11 2VA sing 8 n n CG1 HG12 2VA sing 9 n n CG1 HG13 2VA sing 10 n n CA N 2VA sing 11 n n CA C 2VA sing 12 n n CA HA 2VA sing 13 n n N H 2VA sing 14 n n N H2 2VA sing 15 n n C O 2VA doub 16 n n C NAZ 2VA sing 17 n n NAZ C2' 2VA sing 18 n n NAZ HAZ 2VA sing 19 n n C2' C3' 2VA sing 20 n n C2' C1' 2VA sing 21 n n C2' H2' 2VA sing 22 n n C3' O3' 2VA sing 23 n n C3' C4' 2VA sing 24 n n C3' H3' 2VA sing 25 n n O3' H1 2VA sing 26 n n C4' C5' 2VA sing 27 n n C4' O4' 2VA sing 28 n n C4' H4' 2VA sing 29 n n C5' O5' 2VA sing 30 n n C5' "H5'1" 2VA sing 31 n n C5' "H5'2" 2VA sing 32 n n O5' H5' 2VA sing 33 n n O4' C1' 2VA sing 34 n n C1' N9 2VA sing 35 n n C1' H1' 2VA sing 36 n n N9 C8 2VA sing 37 n y N9 C4 2VA sing 38 n y C8 N7 2VA doub 39 n y C8 H8 2VA sing 40 n n N7 C5 2VA sing 41 n y C5 C4 2VA doub 42 n y C5 C6 2VA sing 43 n y C4 N3 2VA sing 44 n y N3 C2 2VA doub 45 n y C2 N1 2VA sing 46 n y C2 HC2 2VA sing 47 n n N1 C6 2VA doub 48 n y C6 N6 2VA sing 49 n n N6 HN61 2VA sing 50 n n N6 HN62 2VA sing 51 n n # _atom_sites.entry_id 1WNZ _atom_sites.fract_transf_matrix[1][1] 0.013775 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013775 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01195 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2VA A 1 901 901 2VA 2VA . C 3 HOH A 1 1 1 HOH TIP . C 3 HOH A 2 2 2 HOH TIP . C 3 HOH A 3 3 3 HOH TIP . C 3 HOH A 4 4 4 HOH TIP . C 3 HOH A 5 5 5 HOH TIP . C 3 HOH A 6 6 6 HOH TIP . C 3 HOH A 7 7 7 HOH TIP . C 3 HOH A 8 8 8 HOH TIP . C 3 HOH A 9 9 9 HOH TIP . C 3 HOH A 10 10 10 HOH TIP . C 3 HOH A 11 11 11 HOH TIP . C 3 HOH A 12 12 12 HOH TIP . C 3 HOH A 13 13 13 HOH TIP . C 3 HOH A 14 14 14 HOH TIP . C 3 HOH A 15 15 15 HOH TIP . C 3 HOH A 16 16 16 HOH TIP . C 3 HOH A 17 17 17 HOH TIP . C 3 HOH A 18 18 18 HOH TIP . C 3 HOH A 19 19 19 HOH TIP . C 3 HOH A 20 20 20 HOH TIP . C 3 HOH A 21 21 21 HOH TIP . C 3 HOH A 22 22 22 HOH TIP . C 3 HOH A 23 23 23 HOH TIP . C 3 HOH A 24 24 24 HOH TIP . C 3 HOH A 25 25 25 HOH TIP . C 3 HOH A 26 26 26 HOH TIP . C 3 HOH A 27 27 27 HOH TIP . C 3 HOH A 28 28 28 HOH TIP . C 3 HOH A 29 29 29 HOH TIP . C 3 HOH A 30 30 30 HOH TIP . C 3 HOH A 31 31 31 HOH TIP . C 3 HOH A 32 32 32 HOH TIP . C 3 HOH A 33 33 33 HOH TIP . C 3 HOH A 34 34 34 HOH TIP . C 3 HOH A 35 35 35 HOH TIP . C 3 HOH A 36 36 36 HOH TIP . C 3 HOH A 37 37 37 HOH TIP . C 3 HOH A 38 38 38 HOH TIP . C 3 HOH A 39 39 39 HOH TIP . C 3 HOH A 40 40 40 HOH TIP . C 3 HOH A 41 41 41 HOH TIP . C 3 HOH A 42 42 42 HOH TIP . C 3 HOH A 43 43 43 HOH TIP . C 3 HOH A 44 44 44 HOH TIP . C 3 HOH A 45 45 45 HOH TIP . C 3 HOH A 46 46 46 HOH TIP . C 3 HOH A 47 47 47 HOH TIP . C 3 HOH A 48 48 48 HOH TIP . C 3 HOH A 49 49 49 HOH TIP . C 3 HOH A 50 50 50 HOH TIP . C 3 HOH A 51 51 51 HOH TIP . C 3 HOH A 52 52 52 HOH TIP . C 3 HOH A 53 53 53 HOH TIP . C 3 HOH A 54 54 54 HOH TIP . C 3 HOH A 55 55 55 HOH TIP . C 3 HOH A 56 56 56 HOH TIP . C 3 HOH A 57 57 57 HOH TIP . C 3 HOH A 58 58 58 HOH TIP . C 3 HOH A 59 59 59 HOH TIP . C 3 HOH A 60 60 60 HOH TIP . C 3 HOH A 61 61 61 HOH TIP . C 3 HOH A 62 62 62 HOH TIP . C 3 HOH A 63 63 63 HOH TIP . C 3 HOH A 64 64 64 HOH TIP . C 3 HOH A 65 65 65 HOH TIP . C 3 HOH A 66 66 66 HOH TIP . C 3 HOH A 67 67 67 HOH TIP . C 3 HOH A 68 68 68 HOH TIP . C 3 HOH A 69 69 69 HOH TIP . C 3 HOH A 70 70 70 HOH TIP . C 3 HOH A 71 71 71 HOH TIP . C 3 HOH A 72 72 72 HOH TIP . C 3 HOH A 73 73 73 HOH TIP . C 3 HOH A 74 74 74 HOH TIP . C 3 HOH A 75 75 75 HOH TIP . C 3 HOH A 76 76 76 HOH TIP . C 3 HOH A 77 77 77 HOH TIP . C 3 HOH A 78 78 78 HOH TIP . C 3 HOH A 79 79 79 HOH TIP . C 3 HOH A 80 80 80 HOH TIP . C 3 HOH A 81 81 81 HOH TIP . C 3 HOH A 82 82 82 HOH TIP . C 3 HOH A 83 83 83 HOH TIP . C 3 HOH A 84 84 84 HOH TIP . C 3 HOH A 85 85 85 HOH TIP . C 3 HOH A 86 86 86 HOH TIP . C 3 HOH A 87 87 87 HOH TIP . C 3 HOH A 88 88 88 HOH TIP . C 3 HOH A 89 89 89 HOH TIP . C 3 HOH A 90 90 90 HOH TIP . C 3 HOH A 91 91 91 HOH TIP . C 3 HOH A 92 92 92 HOH TIP . C 3 HOH A 93 93 93 HOH TIP . C 3 HOH A 94 94 94 HOH TIP . C 3 HOH A 95 95 95 HOH TIP . C 3 HOH A 96 96 96 HOH TIP . C 3 HOH A 97 97 97 HOH TIP . C 3 HOH A 98 98 98 HOH TIP . C 3 HOH A 99 99 99 HOH TIP . C 3 HOH A 100 100 100 HOH TIP . C 3 HOH A 101 101 101 HOH TIP . C 3 HOH A 102 102 102 HOH TIP . C 3 HOH A 103 103 103 HOH TIP . C 3 HOH A 104 104 104 HOH TIP . C 3 HOH A 105 105 105 HOH TIP . C 3 HOH A 106 106 106 HOH TIP . C 3 HOH A 107 107 107 HOH TIP . C 3 HOH A 108 108 108 HOH TIP . C 3 HOH A 109 109 109 HOH TIP . C 3 HOH A 110 110 110 HOH TIP . C 3 HOH A 111 111 111 HOH TIP . C 3 HOH A 112 112 112 HOH TIP . C 3 HOH A 113 113 113 HOH TIP . C 3 HOH A 114 114 114 HOH TIP . C 3 HOH A 115 115 115 HOH TIP . C 3 HOH A 116 116 116 HOH TIP . C 3 HOH A 117 117 117 HOH TIP . C 3 HOH A 118 118 118 HOH TIP . C 3 HOH A 119 119 119 HOH TIP . C 3 HOH A 120 120 120 HOH TIP . C 3 HOH A 121 121 121 HOH TIP . C 3 HOH A 122 122 122 HOH TIP . C 3 HOH A 123 123 123 HOH TIP . C 3 HOH A 124 124 124 HOH TIP . C 3 HOH A 125 125 125 HOH TIP . C 3 HOH A 126 126 126 HOH TIP . C 3 HOH A 127 127 127 HOH TIP . C 3 HOH A 128 128 128 HOH TIP . C 3 HOH A 129 129 129 HOH TIP . C 3 HOH A 130 130 130 HOH TIP . C 3 HOH A 131 131 131 HOH TIP . C 3 HOH A 132 132 132 HOH TIP . C 3 HOH A 133 133 133 HOH TIP . C 3 HOH A 134 134 134 HOH TIP . C 3 HOH A 135 135 135 HOH TIP . C 3 HOH A 136 136 136 HOH TIP . C 3 HOH A 137 137 137 HOH TIP . C 3 HOH A 138 138 138 HOH TIP . C 3 HOH A 139 139 139 HOH TIP . C 3 HOH A 140 140 140 HOH TIP . C 3 HOH A 141 141 141 HOH TIP . C 3 HOH A 142 142 142 HOH TIP . C 3 HOH A 143 143 143 HOH TIP . C 3 HOH A 144 144 144 HOH TIP . C 3 HOH A 145 145 145 HOH TIP . C 3 HOH A 146 146 146 HOH TIP . C 3 HOH A 147 147 147 HOH TIP . C 3 HOH A 148 148 148 HOH TIP . C 3 HOH A 149 149 149 HOH TIP . C 3 HOH A 150 150 150 HOH TIP . C 3 HOH A 151 151 151 HOH TIP . C 3 HOH A 152 152 152 HOH TIP . C 3 HOH A 153 153 153 HOH TIP . C 3 HOH A 154 154 154 HOH TIP . C 3 HOH A 155 155 155 HOH TIP . C 3 HOH A 156 156 156 HOH TIP . C 3 HOH A 157 157 157 HOH TIP . C 3 HOH A 158 158 158 HOH TIP . C 3 HOH A 159 159 159 HOH TIP . C 3 HOH A 160 160 160 HOH TIP . C 3 HOH A 161 161 161 HOH TIP . C 3 HOH A 162 162 162 HOH TIP . C 3 HOH A 163 163 163 HOH TIP . C 3 HOH A 164 164 164 HOH TIP . C 3 HOH A 165 165 165 HOH TIP . C 3 HOH A 166 166 166 HOH TIP . C 3 HOH A 167 167 167 HOH TIP . C 3 HOH A 168 168 168 HOH TIP . C 3 HOH A 169 169 169 HOH TIP . C 3 HOH A 170 170 170 HOH TIP . C 3 HOH A 171 171 171 HOH TIP . C 3 HOH A 172 172 172 HOH TIP . C 3 HOH A 173 173 173 HOH TIP . C 3 HOH A 174 174 174 HOH TIP . C 3 HOH A 175 175 175 HOH TIP . C 3 HOH A 176 176 176 HOH TIP . C 3 HOH A 177 177 177 HOH TIP . C 3 HOH A 178 178 178 HOH TIP . C 3 HOH A 179 179 179 HOH TIP . C 3 HOH A 180 180 180 HOH TIP . C 3 HOH A 181 181 181 HOH TIP . C 3 HOH A 182 182 182 HOH TIP . C 3 HOH A 183 183 183 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CG2 2VA . . . B 2 72.242 30.691 17.837 1 34.35 ? CG2 2VA 901 A 1 HETATM 2 C CB 2VA . . . B 2 72.282 30.496 19.355 1 35.25 ? CB 2VA 901 A 1 HETATM 3 C CG1 2VA . . . B 2 73.582 31.071 19.921 1 40.44 ? CG1 2VA 901 A 1 HETATM 4 C CA 2VA . . . B 2 71.075 31.127 20.054 1 34.78 ? CA 2VA 901 A 1 HETATM 5 N N 2VA . . . B 2 71.152 30.859 21.499 1 31.31 ? N 2VA 901 A 1 HETATM 6 C C 2VA . . . B 2 69.761 30.529 19.545 1 39.55 ? C 2VA 901 A 1 HETATM 7 O O 2VA . . . B 2 69.6 29.309 19.552 1 35.17 ? O 2VA 901 A 1 HETATM 8 N NAZ 2VA . . . B 2 68.861 31.398 19.088 1 33.95 ? NAZ 2VA 901 A 1 HETATM 9 C C2' 2VA . . . B 2 67.534 30.962 18.62 1 37.66 ? C2' 2VA 901 A 1 HETATM 10 C C3' 2VA . . . B 2 67.289 31.251 17.138 1 32.92 ? C3' 2VA 901 A 1 HETATM 11 O O3' 2VA . . . B 2 68.434 30.947 16.336 1 30.81 ? O3' 2VA 901 A 1 HETATM 12 C C4' 2VA . . . B 2 67.016 32.754 17.192 1 29.93 ? C4' 2VA 901 A 1 HETATM 13 C C5' 2VA . . . B 2 66.316 33.155 15.89 1 38.83 ? C5' 2VA 901 A 1 HETATM 14 O O5' 2VA . . . B 2 66.043 34.559 15.883 1 42.8 ? O5' 2VA 901 A 1 HETATM 15 O O4' 2VA . . . B 2 66.092 32.836 18.289 1 36.41 ? O4' 2VA 901 A 1 HETATM 16 C C1' 2VA . . . B 2 66.476 31.855 19.273 1 38.86 ? C1' 2VA 901 A 1 HETATM 17 N N9 2VA . . . B 2 65.266 31.118 19.713 1 34.11 ? N9 2VA 901 A 1 HETATM 18 C C8 2VA . . . B 2 64.689 30.079 19.11 1 30.13 ? C8 2VA 901 A 1 HETATM 19 N N7 2VA . . . B 2 63.594 29.722 19.777 1 35.06 ? N7 2VA 901 A 1 HETATM 20 C C5 2VA . . . B 2 63.472 30.534 20.824 1 32.78 ? C5 2VA 901 A 1 HETATM 21 C C4 2VA . . . B 2 64.539 31.422 20.785 1 32.09 ? C4 2VA 901 A 1 HETATM 22 N N3 2VA . . . B 2 64.686 32.331 21.761 1 33.53 ? N3 2VA 901 A 1 HETATM 23 C C2 2VA . . . B 2 63.826 32.385 22.765 1 29.34 ? C2 2VA 901 A 1 HETATM 24 N N1 2VA . . . B 2 62.801 31.554 22.835 1 38.36 ? N1 2VA 901 A 1 HETATM 25 C C6 2VA . . . B 2 62.587 30.623 21.892 1 39.94 ? C6 2VA 901 A 1 HETATM 26 N N6 2VA . . . B 2 61.54 29.806 21.983 1 36.04 ? N6 2VA 901 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #