data_1WOA # _model_server_result.job_id N9KbcFfNgaZMW3V-IAfAcg _model_server_result.datetime_utc '2024-12-01 20:26:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1woa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":600}' # _entry.id 1WOA # _exptl.entry_id 1WOA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 172.074 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-HYDROXY-1-(HYDROXYMETHYL)ETHYL DIHYDROGEN PHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1WOA _cell.length_a 51.05 _cell.length_b 108.51 _cell.length_c 178.75 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WOA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C3 H9 O6 P' _chem_comp.formula_weight 172.074 _chem_comp.id G2H _chem_comp.mon_nstd_flag . _chem_comp.name '2-HYDROXY-1-(HYDROXYMETHYL)ETHYL DIHYDROGEN PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCEROL-2-PHOSPHATE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 G2H sing 83 n n C1 O11 G2H sing 84 n n C1 H11A G2H sing 85 n n C1 H12 G2H sing 86 n n C2 C3 G2H sing 87 n n C2 O1P G2H sing 88 n n C2 H2 G2H sing 89 n n C3 O31 G2H sing 90 n n C3 H31A G2H sing 91 n n C3 H32 G2H sing 92 n n P O1P G2H sing 93 n n P O2P G2H doub 94 n n P O3P G2H sing 95 n n P O4P G2H sing 96 n n O11 H11 G2H sing 97 n n O31 H31 G2H sing 98 n n O3P H3P G2H sing 99 n n O4P H4P G2H sing 100 n n # _atom_sites.entry_id 1WOA _atom_sites.fract_transf_matrix[1][1] 0.019589 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009216 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005594 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 G2H A 1 300 300 G2H G2P . F 2 G2H B 1 400 300 G2H G2P . G 2 G2H C 1 500 300 G2H G2P . H 2 G2H D 1 600 300 G2H G2P . I 3 HOH A 1 301 19 HOH HOH . I 3 HOH A 2 302 22 HOH HOH . I 3 HOH A 3 303 30 HOH HOH . I 3 HOH A 4 304 31 HOH HOH . I 3 HOH A 5 305 36 HOH HOH . I 3 HOH A 6 306 40 HOH HOH . I 3 HOH A 7 307 52 HOH HOH . I 3 HOH A 8 308 55 HOH HOH . I 3 HOH A 9 309 69 HOH HOH . I 3 HOH A 10 310 74 HOH HOH . I 3 HOH A 11 311 76 HOH HOH . I 3 HOH A 12 312 78 HOH HOH . I 3 HOH A 13 313 80 HOH HOH . I 3 HOH A 14 314 82 HOH HOH . I 3 HOH A 15 315 86 HOH HOH . I 3 HOH A 16 316 91 HOH HOH . I 3 HOH A 17 317 93 HOH HOH . I 3 HOH A 18 318 96 HOH HOH . I 3 HOH A 19 319 99 HOH HOH . I 3 HOH A 20 320 100 HOH HOH . I 3 HOH A 21 321 101 HOH HOH . I 3 HOH A 22 322 116 HOH HOH . I 3 HOH A 23 323 117 HOH HOH . I 3 HOH A 24 324 118 HOH HOH . I 3 HOH A 25 325 123 HOH HOH . I 3 HOH A 26 326 127 HOH HOH . I 3 HOH A 27 327 139 HOH HOH . I 3 HOH A 28 328 140 HOH HOH . J 3 HOH B 1 401 34 HOH HOH . J 3 HOH B 2 402 35 HOH HOH . J 3 HOH B 3 403 37 HOH HOH . J 3 HOH B 4 404 38 HOH HOH . J 3 HOH B 5 405 41 HOH HOH . J 3 HOH B 6 406 42 HOH HOH . J 3 HOH B 7 407 48 HOH HOH . J 3 HOH B 8 408 53 HOH HOH . J 3 HOH B 9 409 56 HOH HOH . J 3 HOH B 10 410 57 HOH HOH . J 3 HOH B 11 411 58 HOH HOH . J 3 HOH B 12 412 60 HOH HOH . J 3 HOH B 13 413 61 HOH HOH . J 3 HOH B 14 414 63 HOH HOH . J 3 HOH B 15 415 65 HOH HOH . J 3 HOH B 16 416 66 HOH HOH . J 3 HOH B 17 417 67 HOH HOH . J 3 HOH B 18 418 68 HOH HOH . J 3 HOH B 19 419 70 HOH HOH . J 3 HOH B 20 420 79 HOH HOH . J 3 HOH B 21 421 83 HOH HOH . J 3 HOH B 22 422 87 HOH HOH . J 3 HOH B 23 423 92 HOH HOH . J 3 HOH B 24 424 94 HOH HOH . J 3 HOH B 25 425 95 HOH HOH . J 3 HOH B 26 426 97 HOH HOH . J 3 HOH B 27 427 98 HOH HOH . J 3 HOH B 28 428 102 HOH HOH . J 3 HOH B 29 429 103 HOH HOH . J 3 HOH B 30 430 104 HOH HOH . J 3 HOH B 31 431 105 HOH HOH . J 3 HOH B 32 432 106 HOH HOH . J 3 HOH B 33 433 107 HOH HOH . J 3 HOH B 34 434 111 HOH HOH . J 3 HOH B 35 435 114 HOH HOH . J 3 HOH B 36 436 124 HOH HOH . J 3 HOH B 37 437 137 HOH HOH . J 3 HOH B 38 438 141 HOH HOH . J 3 HOH B 39 439 142 HOH HOH . J 3 HOH B 40 440 143 HOH HOH . K 3 HOH C 1 501 2 HOH HOH . K 3 HOH C 2 502 6 HOH HOH . K 3 HOH C 3 503 7 HOH HOH . K 3 HOH C 4 504 9 HOH HOH . K 3 HOH C 5 505 14 HOH HOH . K 3 HOH C 6 506 17 HOH HOH . K 3 HOH C 7 507 21 HOH HOH . K 3 HOH C 8 508 23 HOH HOH . K 3 HOH C 9 509 24 HOH HOH . K 3 HOH C 10 510 25 HOH HOH . K 3 HOH C 11 511 26 HOH HOH . K 3 HOH C 12 512 27 HOH HOH . K 3 HOH C 13 513 28 HOH HOH . K 3 HOH C 14 514 39 HOH HOH . K 3 HOH C 15 515 43 HOH HOH . K 3 HOH C 16 516 45 HOH HOH . K 3 HOH C 17 517 46 HOH HOH . K 3 HOH C 18 518 50 HOH HOH . K 3 HOH C 19 519 51 HOH HOH . K 3 HOH C 20 520 54 HOH HOH . K 3 HOH C 21 521 62 HOH HOH . K 3 HOH C 22 522 64 HOH HOH . K 3 HOH C 23 523 73 HOH HOH . K 3 HOH C 24 524 81 HOH HOH . K 3 HOH C 25 525 85 HOH HOH . K 3 HOH C 26 526 88 HOH HOH . K 3 HOH C 27 527 89 HOH HOH . K 3 HOH C 28 528 109 HOH HOH . K 3 HOH C 29 529 110 HOH HOH . K 3 HOH C 30 530 112 HOH HOH . K 3 HOH C 31 531 119 HOH HOH . K 3 HOH C 32 532 121 HOH HOH . K 3 HOH C 33 533 126 HOH HOH . K 3 HOH C 34 534 128 HOH HOH . K 3 HOH C 35 535 129 HOH HOH . K 3 HOH C 36 536 130 HOH HOH . K 3 HOH C 37 537 131 HOH HOH . K 3 HOH C 38 538 132 HOH HOH . K 3 HOH C 39 539 133 HOH HOH . K 3 HOH C 40 540 144 HOH HOH . K 3 HOH C 41 541 145 HOH HOH . L 3 HOH D 1 601 1 HOH HOH . L 3 HOH D 2 602 3 HOH HOH . L 3 HOH D 3 603 4 HOH HOH . L 3 HOH D 4 604 5 HOH HOH . L 3 HOH D 5 605 8 HOH HOH . L 3 HOH D 6 606 10 HOH HOH . L 3 HOH D 7 607 11 HOH HOH . L 3 HOH D 8 608 12 HOH HOH . L 3 HOH D 9 609 13 HOH HOH . L 3 HOH D 10 610 15 HOH HOH . L 3 HOH D 11 611 16 HOH HOH . L 3 HOH D 12 612 18 HOH HOH . L 3 HOH D 13 613 20 HOH HOH . L 3 HOH D 14 614 29 HOH HOH . L 3 HOH D 15 615 32 HOH HOH . L 3 HOH D 16 616 33 HOH HOH . L 3 HOH D 17 617 44 HOH HOH . L 3 HOH D 18 618 47 HOH HOH . L 3 HOH D 19 619 49 HOH HOH . L 3 HOH D 20 620 59 HOH HOH . L 3 HOH D 21 621 71 HOH HOH . L 3 HOH D 22 622 75 HOH HOH . L 3 HOH D 23 623 77 HOH HOH . L 3 HOH D 24 624 84 HOH HOH . L 3 HOH D 25 625 90 HOH HOH . L 3 HOH D 26 626 108 HOH HOH . L 3 HOH D 27 627 115 HOH HOH . L 3 HOH D 28 628 122 HOH HOH . L 3 HOH D 29 629 125 HOH HOH . L 3 HOH D 30 630 134 HOH HOH . L 3 HOH D 31 631 135 HOH HOH . L 3 HOH D 32 632 136 HOH HOH . L 3 HOH D 33 633 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 G2H . . . H 2 65.015 102.939 111.206 1 77.92 ? C1 G2H 600 D 1 HETATM 2 C C2 G2H . . . H 2 66.287 102.633 111.61 1 78.36 ? C2 G2H 600 D 1 HETATM 3 C C3 G2H . . . H 2 67.081 103.512 112.667 1 78.7 ? C3 G2H 600 D 1 HETATM 4 P P G2H . . . H 2 67.517 101.164 109.609 1 80.42 ? P G2H 600 D 1 HETATM 5 O O11 G2H . . . H 2 64.153 102.618 110.537 1 77.63 ? O11 G2H 600 D 1 HETATM 6 O O31 G2H . . . H 2 66.618 104.203 113.918 1 77.85 ? O31 G2H 600 D 1 HETATM 7 O O1P G2H . . . H 2 67.096 101.526 111.184 1 79.56 ? O1P G2H 600 D 1 HETATM 8 O O2P G2H . . . H 2 68.972 100.637 109.648 1 80.3 ? O2P G2H 600 D 1 HETATM 9 O O3P G2H . . . H 2 67.424 102.469 108.77 1 81.62 ? O3P G2H 600 D 1 HETATM 10 O O4P G2H . . . H 2 66.511 100.071 109.098 1 80.78 ? O4P G2H 600 D 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 101 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #