data_1WOE # _model_server_result.job_id sUWh6Pnfet5GfKmiQFYTRQ _model_server_result.datetime_utc '2024-12-22 03:58:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1woe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":13}' # _entry.id 1WOE # _exptl.entry_id 1WOE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 202.34 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SPERMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1WOE _cell.length_a 18.46 _cell.length_b 30.76 _cell.length_c 43.18 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WOE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 6 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 6 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 6 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 2 1_555 B N3 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 2 1_555 B O2 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 2 1_555 B N4 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DC 3 A DC 3 1_555 B N1 DG 4 B DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 DC 3 A DC 3 1_555 B O6 DG 4 B DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 DC 3 A DC 3 1_555 B N2 DG 4 B DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DG 4 A DG 4 1_555 B N3 DC 3 B DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N2 DG 4 A DG 4 1_555 B O2 DC 3 B DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O6 DG 4 A DG 4 1_555 B N4 DC 3 B DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 DC 5 A DC 5 1_555 B N1 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N4 DC 5 A DC 5 1_555 B O6 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O2 DC 5 A DC 5 1_555 B N2 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N1 DG 6 A DG 6 1_555 B N3 DC 1 B DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N2 DG 6 A DG 6 1_555 B O2 DC 1 B DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O6 DG 6 A DG 6 1_555 B N4 DC 1 B DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H26 N4' _chem_comp.formula_weight 202.34 _chem_comp.id SPM _chem_comp.mon_nstd_flag . _chem_comp.name SPERMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 SPM sing 77 n n N1 HN11 SPM sing 78 n n N1 HN12 SPM sing 79 n n C2 C3 SPM sing 80 n n C2 H21 SPM sing 81 n n C2 H22 SPM sing 82 n n C3 C4 SPM sing 83 n n C3 H31 SPM sing 84 n n C3 H32 SPM sing 85 n n C4 N5 SPM sing 86 n n C4 H41 SPM sing 87 n n C4 H42 SPM sing 88 n n N5 C6 SPM sing 89 n n N5 HN5 SPM sing 90 n n C6 C7 SPM sing 91 n n C6 H61 SPM sing 92 n n C6 H62 SPM sing 93 n n C7 C8 SPM sing 94 n n C7 H71 SPM sing 95 n n C7 H72 SPM sing 96 n n C8 C9 SPM sing 97 n n C8 H81 SPM sing 98 n n C8 H82 SPM sing 99 n n C9 N10 SPM sing 100 n n C9 H91 SPM sing 101 n n C9 H92 SPM sing 102 n n N10 C11 SPM sing 103 n n N10 HN0 SPM sing 104 n n C11 C12 SPM sing 105 n n C11 H111 SPM sing 106 n n C11 H112 SPM sing 107 n n C12 C13 SPM sing 108 n n C12 H121 SPM sing 109 n n C12 H122 SPM sing 110 n n C13 N14 SPM sing 111 n n C13 H131 SPM sing 112 n n C13 H132 SPM sing 113 n n N14 HN41 SPM sing 114 n n N14 HN42 SPM sing 115 n n # _atom_sites.entry_id 1WOE _atom_sites.fract_transf_matrix[1][1] 0.054171 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.03251 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023159 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SPM A 1 13 13 SPM SPM . D 3 DOD A 1 102 102 DOD DOD . D 3 DOD A 2 104 104 DOD DOD . D 3 DOD A 3 106 106 DOD DOD . D 3 DOD A 4 108 108 DOD DOD . D 3 DOD A 5 109 109 DOD DOD . D 3 DOD A 6 110 110 DOD DOD . D 3 DOD A 7 111 111 DOD DOD . D 3 DOD A 8 114 114 DOD DOD . D 3 DOD A 9 115 115 DOD DOD . D 3 DOD A 10 118 118 DOD DOD . D 3 DOD A 11 121 121 DOD DOD . D 3 DOD A 12 123 123 DOD DOD . D 3 DOD A 13 129 129 DOD DOD . D 3 DOD A 14 131 131 DOD DOD . D 3 DOD A 15 132 132 DOD DOD . D 3 DOD A 16 133 133 DOD DOD . D 3 DOD A 17 134 134 DOD DOD . D 3 DOD A 18 136 136 DOD DOD . D 3 DOD A 19 137 137 DOD DOD . D 3 DOD A 20 138 138 DOD DOD . D 3 DOD A 21 139 139 DOD DOD . D 3 DOD A 22 140 140 DOD DOD . D 3 DOD A 23 141 141 DOD DOD . D 3 DOD A 24 143 143 DOD DOD . D 3 DOD A 25 147 147 DOD DOD . D 3 DOD A 26 148 148 DOD DOD . D 3 DOD A 27 150 150 DOD DOD . D 3 DOD A 28 153 153 DOD DOD . D 3 DOD A 29 154 154 DOD DOD . D 3 DOD A 30 155 155 DOD DOD . E 3 DOD B 1 100 100 DOD DOD . E 3 DOD B 2 101 101 DOD DOD . E 3 DOD B 3 103 103 DOD DOD . E 3 DOD B 4 105 105 DOD DOD . E 3 DOD B 5 107 107 DOD DOD . E 3 DOD B 6 112 112 DOD DOD . E 3 DOD B 7 113 113 DOD DOD . E 3 DOD B 8 116 116 DOD DOD . E 3 DOD B 9 117 117 DOD DOD . E 3 DOD B 10 119 119 DOD DOD . E 3 DOD B 11 120 120 DOD DOD . E 3 DOD B 12 122 122 DOD DOD . E 3 DOD B 13 124 124 DOD DOD . E 3 DOD B 14 125 125 DOD DOD . E 3 DOD B 15 126 126 DOD DOD . E 3 DOD B 16 127 127 DOD DOD . E 3 DOD B 17 128 128 DOD DOD . E 3 DOD B 18 130 130 DOD DOD . E 3 DOD B 19 135 135 DOD DOD . E 3 DOD B 20 142 142 DOD DOD . E 3 DOD B 21 144 144 DOD DOD . E 3 DOD B 22 145 145 DOD DOD . E 3 DOD B 23 146 146 DOD DOD . E 3 DOD B 24 149 149 DOD DOD . E 3 DOD B 25 151 151 DOD DOD . E 3 DOD B 26 152 152 DOD DOD . E 3 DOD B 27 156 156 DOD DOD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 SPM . . . C 2 24.035 18.567 27.275 1 9.37 ? N1 SPM 13 A 1 HETATM 2 C C2 SPM . . . C 2 23.818 17.185 26.864 1 10.74 ? C2 SPM 13 A 1 HETATM 3 C C3 SPM . . . C 2 22.645 17.094 25.894 1 10.84 ? C3 SPM 13 A 1 HETATM 4 C C4 SPM . . . C 2 22.311 15.681 25.389 1 9.98 ? C4 SPM 13 A 1 HETATM 5 N N5 SPM . . . C 2 23.355 15.128 24.491 1 10.13 ? N5 SPM 13 A 1 HETATM 6 C C6 SPM . . . C 2 22.921 13.803 23.915 1 11.84 ? C6 SPM 13 A 1 HETATM 7 C C7 SPM . . . C 2 23.935 13.201 23.004 1 13.41 ? C7 SPM 13 A 1 HETATM 8 C C8 SPM . . . C 2 23.296 12.301 21.94 1 13.45 ? C8 SPM 13 A 1 HETATM 9 C C9 SPM . . . C 2 24.352 11.73 21.064 1 16 ? C9 SPM 13 A 1 HETATM 10 N N10 SPM . . . C 2 23.767 10.826 19.981 1 15.24 ? N10 SPM 13 A 1 HETATM 11 C C11 SPM . . . C 2 24.75 10.524 18.888 1 18.03 ? C11 SPM 13 A 1 HETATM 12 C C12 SPM . . . C 2 24.196 9.413 17.949 1 18.03 ? C12 SPM 13 A 1 HETATM 13 C C13 SPM . . . C 2 25.26 9.139 16.852 1 20.52 ? C13 SPM 13 A 1 HETATM 14 N N14 SPM . . . C 2 24.841 8.084 15.889 1 21.21 ? N14 SPM 13 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #