data_1WOM # _model_server_result.job_id XdRHEaQj1KGcEEXa9K_BaA _model_server_result.datetime_utc '2024-11-05 05:04:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1wom # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":604}' # _entry.id 1WOM # _exptl.entry_id 1WOM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 76.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-1,2-PROPANEDIOL _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1WOM _cell.length_a 77.508 _cell.length_b 82.404 _cell.length_c 137.359 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WOM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,P 1 1 B,M,N,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N # _chem_comp.formula 'C3 H8 O2' _chem_comp.formula_weight 76.094 _chem_comp.id PGO _chem_comp.mon_nstd_flag . _chem_comp.name S-1,2-PROPANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PGO sing 247 n n C1 O1 PGO sing 248 n n C1 H11 PGO sing 249 n n C1 H12 PGO sing 250 n n C2 C3 PGO sing 251 n n C2 O2 PGO sing 252 n n C2 H2 PGO sing 253 n n C3 H31 PGO sing 254 n n C3 H32 PGO sing 255 n n C3 H33 PGO sing 256 n n O1 HO1 PGO sing 257 n n O2 HO2 PGO sing 258 n n # _atom_sites.entry_id 1WOM _atom_sites.fract_transf_matrix[1][1] 0.012902 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012135 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00728 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MLA A 1 501 1 MLA MLA . D 3 PGO A 1 601 1 PGO PGQ . E 3 PGO A 1 603 3 PGO PGQ . F 3 PGO A 1 604 4 PGO PGQ . G 3 PGO A 1 607 7 PGO PGQ . H 3 PGO A 1 608 8 PGO PGQ . I 3 PGO A 1 609 9 PGO PGQ . J 3 PGO A 1 610 10 PGO PGQ . K 3 PGO A 1 611 11 PGO PGQ . L 3 PGO A 1 612 12 PGO PGQ . M 3 PGO B 1 602 2 PGO PGQ . N 3 PGO B 1 605 5 PGO PGQ . O 3 PGO B 1 606 6 PGO PGQ . P 4 HOH A 1 613 1 HOH HOH . P 4 HOH A 2 614 2 HOH HOH . P 4 HOH A 3 615 3 HOH HOH . P 4 HOH A 4 616 4 HOH HOH . P 4 HOH A 5 617 5 HOH HOH . P 4 HOH A 6 618 6 HOH HOH . P 4 HOH A 7 619 8 HOH HOH . P 4 HOH A 8 620 10 HOH HOH . P 4 HOH A 9 621 11 HOH HOH . P 4 HOH A 10 622 12 HOH HOH . P 4 HOH A 11 623 13 HOH HOH . P 4 HOH A 12 624 15 HOH HOH . P 4 HOH A 13 625 16 HOH HOH . P 4 HOH A 14 626 17 HOH HOH . P 4 HOH A 15 627 18 HOH HOH . P 4 HOH A 16 628 19 HOH HOH . P 4 HOH A 17 629 21 HOH HOH . P 4 HOH A 18 630 22 HOH HOH . P 4 HOH A 19 631 23 HOH HOH . P 4 HOH A 20 632 24 HOH HOH . P 4 HOH A 21 633 25 HOH HOH . P 4 HOH A 22 634 27 HOH HOH . P 4 HOH A 23 635 28 HOH HOH . P 4 HOH A 24 636 29 HOH HOH . P 4 HOH A 25 637 30 HOH HOH . P 4 HOH A 26 638 31 HOH HOH . P 4 HOH A 27 639 33 HOH HOH . P 4 HOH A 28 640 34 HOH HOH . P 4 HOH A 29 641 35 HOH HOH . P 4 HOH A 30 642 36 HOH HOH . P 4 HOH A 31 643 37 HOH HOH . P 4 HOH A 32 644 38 HOH HOH . P 4 HOH A 33 645 40 HOH HOH . P 4 HOH A 34 646 41 HOH HOH . P 4 HOH A 35 647 42 HOH HOH . P 4 HOH A 36 648 43 HOH HOH . P 4 HOH A 37 649 46 HOH HOH . P 4 HOH A 38 650 47 HOH HOH . P 4 HOH A 39 651 50 HOH HOH . P 4 HOH A 40 652 51 HOH HOH . P 4 HOH A 41 653 52 HOH HOH . P 4 HOH A 42 654 53 HOH HOH . P 4 HOH A 43 655 54 HOH HOH . P 4 HOH A 44 656 55 HOH HOH . P 4 HOH A 45 657 57 HOH HOH . P 4 HOH A 46 658 58 HOH HOH . P 4 HOH A 47 659 59 HOH HOH . P 4 HOH A 48 660 61 HOH HOH . P 4 HOH A 49 661 62 HOH HOH . P 4 HOH A 50 662 63 HOH HOH . P 4 HOH A 51 663 65 HOH HOH . P 4 HOH A 52 664 66 HOH HOH . P 4 HOH A 53 665 67 HOH HOH . P 4 HOH A 54 666 69 HOH HOH . P 4 HOH A 55 667 70 HOH HOH . P 4 HOH A 56 668 73 HOH HOH . P 4 HOH A 57 669 74 HOH HOH . P 4 HOH A 58 670 76 HOH HOH . P 4 HOH A 59 671 78 HOH HOH . P 4 HOH A 60 672 79 HOH HOH . P 4 HOH A 61 673 80 HOH HOH . P 4 HOH A 62 674 81 HOH HOH . P 4 HOH A 63 675 82 HOH HOH . P 4 HOH A 64 676 84 HOH HOH . P 4 HOH A 65 677 85 HOH HOH . P 4 HOH A 66 678 86 HOH HOH . P 4 HOH A 67 679 89 HOH HOH . P 4 HOH A 68 680 90 HOH HOH . P 4 HOH A 69 681 92 HOH HOH . P 4 HOH A 70 682 94 HOH HOH . P 4 HOH A 71 683 95 HOH HOH . P 4 HOH A 72 684 96 HOH HOH . P 4 HOH A 73 685 98 HOH HOH . P 4 HOH A 74 686 99 HOH HOH . P 4 HOH A 75 687 100 HOH HOH . P 4 HOH A 76 688 105 HOH HOH . P 4 HOH A 77 689 107 HOH HOH . P 4 HOH A 78 690 108 HOH HOH . P 4 HOH A 79 691 110 HOH HOH . P 4 HOH A 80 692 112 HOH HOH . P 4 HOH A 81 693 113 HOH HOH . P 4 HOH A 82 694 115 HOH HOH . P 4 HOH A 83 695 117 HOH HOH . P 4 HOH A 84 696 118 HOH HOH . P 4 HOH A 85 697 120 HOH HOH . P 4 HOH A 86 698 121 HOH HOH . P 4 HOH A 87 699 122 HOH HOH . P 4 HOH A 88 700 123 HOH HOH . P 4 HOH A 89 701 125 HOH HOH . P 4 HOH A 90 702 128 HOH HOH . P 4 HOH A 91 703 130 HOH HOH . P 4 HOH A 92 704 131 HOH HOH . P 4 HOH A 93 705 132 HOH HOH . P 4 HOH A 94 706 134 HOH HOH . P 4 HOH A 95 707 135 HOH HOH . P 4 HOH A 96 708 136 HOH HOH . P 4 HOH A 97 709 137 HOH HOH . P 4 HOH A 98 710 139 HOH HOH . P 4 HOH A 99 711 140 HOH HOH . P 4 HOH A 100 712 144 HOH HOH . P 4 HOH A 101 713 145 HOH HOH . P 4 HOH A 102 714 147 HOH HOH . P 4 HOH A 103 715 148 HOH HOH . Q 4 HOH B 1 607 7 HOH HOH . Q 4 HOH B 2 608 9 HOH HOH . Q 4 HOH B 3 609 14 HOH HOH . Q 4 HOH B 4 610 20 HOH HOH . Q 4 HOH B 5 611 26 HOH HOH . Q 4 HOH B 6 612 32 HOH HOH . Q 4 HOH B 7 613 39 HOH HOH . Q 4 HOH B 8 614 44 HOH HOH . Q 4 HOH B 9 615 45 HOH HOH . Q 4 HOH B 10 616 48 HOH HOH . Q 4 HOH B 11 617 49 HOH HOH . Q 4 HOH B 12 618 56 HOH HOH . Q 4 HOH B 13 619 60 HOH HOH . Q 4 HOH B 14 620 64 HOH HOH . Q 4 HOH B 15 621 68 HOH HOH . Q 4 HOH B 16 622 71 HOH HOH . Q 4 HOH B 17 623 72 HOH HOH . Q 4 HOH B 18 624 75 HOH HOH . Q 4 HOH B 19 625 77 HOH HOH . Q 4 HOH B 20 626 83 HOH HOH . Q 4 HOH B 21 627 87 HOH HOH . Q 4 HOH B 22 628 88 HOH HOH . Q 4 HOH B 23 629 91 HOH HOH . Q 4 HOH B 24 630 93 HOH HOH . Q 4 HOH B 25 631 97 HOH HOH . Q 4 HOH B 26 632 101 HOH HOH . Q 4 HOH B 27 633 102 HOH HOH . Q 4 HOH B 28 634 103 HOH HOH . Q 4 HOH B 29 635 104 HOH HOH . Q 4 HOH B 30 636 106 HOH HOH . Q 4 HOH B 31 637 109 HOH HOH . Q 4 HOH B 32 638 111 HOH HOH . Q 4 HOH B 33 639 114 HOH HOH . Q 4 HOH B 34 640 116 HOH HOH . Q 4 HOH B 35 641 119 HOH HOH . Q 4 HOH B 36 642 124 HOH HOH . Q 4 HOH B 37 643 126 HOH HOH . Q 4 HOH B 38 644 127 HOH HOH . Q 4 HOH B 39 645 129 HOH HOH . Q 4 HOH B 40 646 133 HOH HOH . Q 4 HOH B 41 647 138 HOH HOH . Q 4 HOH B 42 648 141 HOH HOH . Q 4 HOH B 43 649 142 HOH HOH . Q 4 HOH B 44 650 143 HOH HOH . Q 4 HOH B 45 651 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGO . . . F 3 51.27 41.146 59.338 1 62.06 ? C1 PGO 604 A 1 HETATM 2 C C2 PGO . . . F 3 51.073 41.841 57.994 1 61.93 ? C2 PGO 604 A 1 HETATM 3 C C3 PGO . . . F 3 52.321 42.621 57.607 1 61.54 ? C3 PGO 604 A 1 HETATM 4 O O1 PGO . . . F 3 50.147 40.344 59.659 1 63.46 ? O1 PGO 604 A 1 HETATM 5 O O2 PGO . . . F 3 49.959 42.738 58.086 1 62.15 ? O2 PGO 604 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #