data_1WPR # _model_server_result.job_id 3VXxQCwooIFrSn6MPVJ9Cw _model_server_result.datetime_utc '2024-11-25 05:14:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1wpr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2001}' # _entry.id 1WPR # _exptl.entry_id 1WPR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1WPR _cell.length_a 77.202 _cell.length_b 80.999 _cell.length_c 136.934 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WPR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,I 1 1 B,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 98 A SER 96 1_555 C S PMS . A PMS 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.592 ? covale ? covale2 B OG SER 98 B SER 96 1_555 H S PMS . B PMS 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.531 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 1WPR _atom_sites.fract_transf_matrix[1][1] 0.012953 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012346 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007303 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PMS A 1 1001 1001 PMS PMS . D 3 GOL A 1 2001 2001 GOL GOL . E 3 GOL A 1 2002 2002 GOL GOL . F 3 GOL A 1 2003 2003 GOL GOL . G 3 GOL A 1 2004 2004 GOL GOL . H 2 PMS B 1 1002 1002 PMS PMS . I 4 HOH A 1 2005 1 HOH HOH . I 4 HOH A 2 2006 2 HOH HOH . I 4 HOH A 3 2007 3 HOH HOH . I 4 HOH A 4 2008 4 HOH HOH . I 4 HOH A 5 2009 5 HOH HOH . I 4 HOH A 6 2010 6 HOH HOH . I 4 HOH A 7 2011 7 HOH HOH . I 4 HOH A 8 2012 8 HOH HOH . I 4 HOH A 9 2013 9 HOH HOH . I 4 HOH A 10 2014 10 HOH HOH . I 4 HOH A 11 2015 11 HOH HOH . I 4 HOH A 12 2016 13 HOH HOH . I 4 HOH A 13 2017 14 HOH HOH . I 4 HOH A 14 2018 16 HOH HOH . I 4 HOH A 15 2019 17 HOH HOH . I 4 HOH A 16 2020 18 HOH HOH . I 4 HOH A 17 2021 19 HOH HOH . I 4 HOH A 18 2022 21 HOH HOH . I 4 HOH A 19 2023 22 HOH HOH . I 4 HOH A 20 2024 23 HOH HOH . I 4 HOH A 21 2025 24 HOH HOH . I 4 HOH A 22 2026 25 HOH HOH . I 4 HOH A 23 2027 30 HOH HOH . I 4 HOH A 24 2028 31 HOH HOH . I 4 HOH A 25 2029 32 HOH HOH . I 4 HOH A 26 2030 33 HOH HOH . I 4 HOH A 27 2031 34 HOH HOH . I 4 HOH A 28 2032 35 HOH HOH . I 4 HOH A 29 2033 36 HOH HOH . I 4 HOH A 30 2034 37 HOH HOH . I 4 HOH A 31 2035 38 HOH HOH . I 4 HOH A 32 2036 39 HOH HOH . I 4 HOH A 33 2037 41 HOH HOH . I 4 HOH A 34 2038 42 HOH HOH . I 4 HOH A 35 2039 43 HOH HOH . I 4 HOH A 36 2040 44 HOH HOH . I 4 HOH A 37 2041 45 HOH HOH . I 4 HOH A 38 2042 46 HOH HOH . I 4 HOH A 39 2043 47 HOH HOH . I 4 HOH A 40 2044 49 HOH HOH . I 4 HOH A 41 2045 50 HOH HOH . I 4 HOH A 42 2046 52 HOH HOH . I 4 HOH A 43 2047 53 HOH HOH . I 4 HOH A 44 2048 55 HOH HOH . I 4 HOH A 45 2049 57 HOH HOH . I 4 HOH A 46 2050 58 HOH HOH . I 4 HOH A 47 2051 60 HOH HOH . I 4 HOH A 48 2052 61 HOH HOH . I 4 HOH A 49 2053 62 HOH HOH . I 4 HOH A 50 2054 63 HOH HOH . I 4 HOH A 51 2055 65 HOH HOH . I 4 HOH A 52 2056 66 HOH HOH . I 4 HOH A 53 2057 67 HOH HOH . I 4 HOH A 54 2058 68 HOH HOH . I 4 HOH A 55 2059 69 HOH HOH . I 4 HOH A 56 2060 70 HOH HOH . I 4 HOH A 57 2061 73 HOH HOH . I 4 HOH A 58 2062 74 HOH HOH . I 4 HOH A 59 2063 75 HOH HOH . I 4 HOH A 60 2064 76 HOH HOH . I 4 HOH A 61 2065 77 HOH HOH . I 4 HOH A 62 2066 78 HOH HOH . I 4 HOH A 63 2067 79 HOH HOH . I 4 HOH A 64 2068 80 HOH HOH . I 4 HOH A 65 2069 81 HOH HOH . I 4 HOH A 66 2070 82 HOH HOH . I 4 HOH A 67 2071 83 HOH HOH . I 4 HOH A 68 2072 85 HOH HOH . I 4 HOH A 69 2073 87 HOH HOH . I 4 HOH A 70 2074 91 HOH HOH . I 4 HOH A 71 2075 92 HOH HOH . I 4 HOH A 72 2076 93 HOH HOH . I 4 HOH A 73 2077 95 HOH HOH . I 4 HOH A 74 2078 96 HOH HOH . I 4 HOH A 75 2079 97 HOH HOH . I 4 HOH A 76 2080 98 HOH HOH . I 4 HOH A 77 2081 99 HOH HOH . I 4 HOH A 78 2082 100 HOH HOH . I 4 HOH A 79 2083 101 HOH HOH . I 4 HOH A 80 2084 102 HOH HOH . I 4 HOH A 81 2085 103 HOH HOH . I 4 HOH A 82 2086 104 HOH HOH . I 4 HOH A 83 2087 105 HOH HOH . I 4 HOH A 84 2088 106 HOH HOH . I 4 HOH A 85 2089 108 HOH HOH . I 4 HOH A 86 2090 109 HOH HOH . I 4 HOH A 87 2091 110 HOH HOH . I 4 HOH A 88 2092 112 HOH HOH . I 4 HOH A 89 2093 113 HOH HOH . I 4 HOH A 90 2094 114 HOH HOH . I 4 HOH A 91 2095 115 HOH HOH . I 4 HOH A 92 2096 116 HOH HOH . I 4 HOH A 93 2097 117 HOH HOH . I 4 HOH A 94 2098 118 HOH HOH . I 4 HOH A 95 2099 120 HOH HOH . I 4 HOH A 96 2100 121 HOH HOH . I 4 HOH A 97 2101 122 HOH HOH . I 4 HOH A 98 2102 123 HOH HOH . I 4 HOH A 99 2103 126 HOH HOH . I 4 HOH A 100 2104 127 HOH HOH . I 4 HOH A 101 2105 129 HOH HOH . I 4 HOH A 102 2106 130 HOH HOH . I 4 HOH A 103 2107 131 HOH HOH . I 4 HOH A 104 2108 132 HOH HOH . I 4 HOH A 105 2109 133 HOH HOH . I 4 HOH A 106 2110 134 HOH HOH . I 4 HOH A 107 2111 137 HOH HOH . I 4 HOH A 108 2112 140 HOH HOH . I 4 HOH A 109 2113 141 HOH HOH . I 4 HOH A 110 2114 143 HOH HOH . I 4 HOH A 111 2115 146 HOH HOH . I 4 HOH A 112 2116 147 HOH HOH . I 4 HOH A 113 2117 148 HOH HOH . I 4 HOH A 114 2118 149 HOH HOH . I 4 HOH A 115 2119 151 HOH HOH . I 4 HOH A 116 2120 153 HOH HOH . I 4 HOH A 117 2121 158 HOH HOH . I 4 HOH A 118 2122 159 HOH HOH . I 4 HOH A 119 2123 160 HOH HOH . I 4 HOH A 120 2124 162 HOH HOH . I 4 HOH A 121 2125 164 HOH HOH . I 4 HOH A 122 2126 165 HOH HOH . I 4 HOH A 123 2127 166 HOH HOH . I 4 HOH A 124 2128 167 HOH HOH . I 4 HOH A 125 2129 168 HOH HOH . J 4 HOH B 1 1003 12 HOH HOH . J 4 HOH B 2 1004 15 HOH HOH . J 4 HOH B 3 1005 20 HOH HOH . J 4 HOH B 4 1006 26 HOH HOH . J 4 HOH B 5 1007 27 HOH HOH . J 4 HOH B 6 1008 28 HOH HOH . J 4 HOH B 7 1009 29 HOH HOH . J 4 HOH B 8 1010 40 HOH HOH . J 4 HOH B 9 1011 48 HOH HOH . J 4 HOH B 10 1012 51 HOH HOH . J 4 HOH B 11 1013 54 HOH HOH . J 4 HOH B 12 1014 56 HOH HOH . J 4 HOH B 13 1015 59 HOH HOH . J 4 HOH B 14 1016 64 HOH HOH . J 4 HOH B 15 1017 71 HOH HOH . J 4 HOH B 16 1018 72 HOH HOH . J 4 HOH B 17 1019 84 HOH HOH . J 4 HOH B 18 1020 86 HOH HOH . J 4 HOH B 19 1021 88 HOH HOH . J 4 HOH B 20 1022 89 HOH HOH . J 4 HOH B 21 1023 90 HOH HOH . J 4 HOH B 22 1024 94 HOH HOH . J 4 HOH B 23 1025 107 HOH HOH . J 4 HOH B 24 1026 111 HOH HOH . J 4 HOH B 25 1027 119 HOH HOH . J 4 HOH B 26 1028 124 HOH HOH . J 4 HOH B 27 1029 125 HOH HOH . J 4 HOH B 28 1030 128 HOH HOH . J 4 HOH B 29 1031 135 HOH HOH . J 4 HOH B 30 1032 136 HOH HOH . J 4 HOH B 31 1033 138 HOH HOH . J 4 HOH B 32 1034 139 HOH HOH . J 4 HOH B 33 1035 142 HOH HOH . J 4 HOH B 34 1036 144 HOH HOH . J 4 HOH B 35 1037 145 HOH HOH . J 4 HOH B 36 1038 150 HOH HOH . J 4 HOH B 37 1039 152 HOH HOH . J 4 HOH B 38 1040 154 HOH HOH . J 4 HOH B 39 1041 155 HOH HOH . J 4 HOH B 40 1042 156 HOH HOH . J 4 HOH B 41 1043 157 HOH HOH . J 4 HOH B 42 1044 161 HOH HOH . J 4 HOH B 43 1045 163 HOH HOH . J 4 HOH B 44 1046 169 HOH HOH . J 4 HOH B 45 1047 170 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 51.456 41.832 58.494 1 73.37 ? C1 GOL 2001 A 1 HETATM 2 O O1 GOL . . . D 3 52.173 41.465 57.325 1 74.09 ? O1 GOL 2001 A 1 HETATM 3 C C2 GOL . . . D 3 50.053 41.243 58.46 1 73.96 ? C2 GOL 2001 A 1 HETATM 4 O O2 GOL . . . D 3 49.39 41.75 57.293 1 73.96 ? O2 GOL 2001 A 1 HETATM 5 C C3 GOL . . . D 3 50.147 39.714 58.397 1 74.22 ? C3 GOL 2001 A 1 HETATM 6 O O3 GOL . . . D 3 48.864 39.114 58.313 1 72.95 ? O3 GOL 2001 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #