data_1WPX
#
_model_server_result.job_id            fhXtne8YVoprT7lMqSwuOw 
_model_server_result.datetime_utc      '2024-11-24 11:54:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1wpx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":810}' 
#
_entry.id    1WPX 
#
_exptl.entry_id    1WPX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1WPX 
_cell.length_a            81.129 
_cell.length_b            186.59 
_cell.length_c            65.14 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1WPX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 56 A CYS 56 1_555 A SG CYS 298 A CYS 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 193 A CYS 193 1_555 A SG CYS 207 A CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf3 A SG CYS 217 A CYS 217 1_555 A SG CYS 240 A CYS 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 A SG CYS 224 A CYS 224 1_555 A SG CYS 233 A CYS 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf5 A SG CYS 262 A CYS 262 1_555 A SG CYS 268 A CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
covale ? covale1 A ND2 ASN 87 A ASN 87 1_555 C C1 NAG . A NAG 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale2 A ND2 ASN 168 A ASN 168 1_555 D C1 NAG . A NAG 820 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale3 A ND2 ASN 368 A ASN 368 1_555 E C1 NAG . A NAG 830 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale4 B C ACE 1 B ACE 500 1_555 B N MET 2 B MET 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 243 n n 
C1 O1 NAG sing 244 n n 
C1 O5 NAG sing 245 n n 
C1 H1 NAG sing 246 n n 
C2 C3 NAG sing 247 n n 
C2 N2 NAG sing 248 n n 
C2 H2 NAG sing 249 n n 
C3 C4 NAG sing 250 n n 
C3 O3 NAG sing 251 n n 
C3 H3 NAG sing 252 n n 
C4 C5 NAG sing 253 n n 
C4 O4 NAG sing 254 n n 
C4 H4 NAG sing 255 n n 
C5 C6 NAG sing 256 n n 
C5 O5 NAG sing 257 n n 
C5 H5 NAG sing 258 n n 
C6 O6 NAG sing 259 n n 
C6 H61 NAG sing 260 n n 
C6 H62 NAG sing 261 n n 
C7 C8 NAG sing 262 n n 
C7 N2 NAG sing 263 n n 
C7 O7 NAG doub 264 n n 
C8 H81 NAG sing 265 n n 
C8 H82 NAG sing 266 n n 
C8 H83 NAG sing 267 n n 
N2 HN2 NAG sing 268 n n 
O1 HO1 NAG sing 269 n n 
O3 HO3 NAG sing 270 n n 
O4 HO4 NAG sing 271 n n 
O6 HO6 NAG sing 272 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     1WPX 
_atom_sites.fract_transf_matrix[1][1]    0.012326 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005359 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015352 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG A 1 810 810 NAG NAG . 
D 3 NAG A 1 820 820 NAG NAG . 
E 3 NAG A 1 830 830 NAG NAG . 
F 4 SO4 A 1 901 901 SO4 SO4 . 
G 4 SO4 B 1 902 902 SO4 SO4 . 
H 5 HOH A 1 1000 1000 HOH HOH . 
H 5 HOH A 2 1001 1001 HOH HOH . 
H 5 HOH A 3 1002 1002 HOH HOH . 
H 5 HOH A 4 1003 1003 HOH HOH . 
H 5 HOH A 5 1004 1004 HOH HOH . 
H 5 HOH A 6 1005 1005 HOH HOH . 
H 5 HOH A 7 1006 1006 HOH HOH . 
H 5 HOH A 8 1007 1007 HOH HOH . 
H 5 HOH A 9 1008 1008 HOH HOH . 
H 5 HOH A 10 1009 1009 HOH HOH . 
H 5 HOH A 11 1010 1010 HOH HOH . 
H 5 HOH A 12 1011 1011 HOH HOH . 
H 5 HOH A 13 1012 1012 HOH HOH . 
H 5 HOH A 14 1013 1013 HOH HOH . 
H 5 HOH A 15 1014 1014 HOH HOH . 
H 5 HOH A 16 1015 1015 HOH HOH . 
H 5 HOH A 17 1016 1016 HOH HOH . 
H 5 HOH A 18 1017 1017 HOH HOH . 
H 5 HOH A 19 1018 1018 HOH HOH . 
H 5 HOH A 20 1020 1020 HOH HOH . 
H 5 HOH A 21 1021 1021 HOH HOH . 
H 5 HOH A 22 1022 1022 HOH HOH . 
H 5 HOH A 23 1023 1023 HOH HOH . 
H 5 HOH A 24 1024 1024 HOH HOH . 
H 5 HOH A 25 1025 1025 HOH HOH . 
H 5 HOH A 26 1027 1027 HOH HOH . 
H 5 HOH A 27 1028 1028 HOH HOH . 
H 5 HOH A 28 1029 1029 HOH HOH . 
H 5 HOH A 29 1030 1030 HOH HOH . 
H 5 HOH A 30 1031 1031 HOH HOH . 
H 5 HOH A 31 1032 1032 HOH HOH . 
H 5 HOH A 32 1034 1034 HOH HOH . 
H 5 HOH A 33 1035 1035 HOH HOH . 
H 5 HOH A 34 1036 1036 HOH HOH . 
H 5 HOH A 35 1037 1037 HOH HOH . 
H 5 HOH A 36 1038 1038 HOH HOH . 
H 5 HOH A 37 1039 1039 HOH HOH . 
H 5 HOH A 38 1040 1040 HOH HOH . 
H 5 HOH A 39 1041 1041 HOH HOH . 
H 5 HOH A 40 1042 1042 HOH HOH . 
H 5 HOH A 41 1043 1043 HOH HOH . 
H 5 HOH A 42 1044 1044 HOH HOH . 
H 5 HOH A 43 1045 1045 HOH HOH . 
H 5 HOH A 44 1046 1046 HOH HOH . 
H 5 HOH A 45 1047 1047 HOH HOH . 
H 5 HOH A 46 1050 1050 HOH HOH . 
I 5 HOH B 1 1019 1019 HOH HOH . 
I 5 HOH B 2 1026 1026 HOH HOH . 
I 5 HOH B 3 1033 1033 HOH HOH . 
I 5 HOH B 4 1048 1048 HOH HOH . 
I 5 HOH B 5 1049 1049 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . C 3 41.437 -2.015 26.483 1 52.86 ? C1 NAG 810 A 1 
HETATM 2 C C2 NAG . . . C 3 42.718 -2.173 25.659 1 54.93 ? C2 NAG 810 A 1 
HETATM 3 C C3 NAG . . . C 3 42.633 -3.468 24.87 1 56.95 ? C3 NAG 810 A 1 
HETATM 4 C C4 NAG . . . C 3 42.487 -4.626 25.852 1 57.48 ? C4 NAG 810 A 1 
HETATM 5 C C5 NAG . . . C 3 41.255 -4.405 26.749 1 56.64 ? C5 NAG 810 A 1 
HETATM 6 C C6 NAG . . . C 3 41.176 -5.442 27.847 1 56.41 ? C6 NAG 810 A 1 
HETATM 7 C C7 NAG . . . C 3 43.332 0.124 25.233 1 55.94 ? C7 NAG 810 A 1 
HETATM 8 C C8 NAG . . . C 3 44.446 0.127 26.277 1 54.46 ? C8 NAG 810 A 1 
HETATM 9 N N2 NAG . . . C 3 42.919 -1.051 24.762 1 54.65 ? N2 NAG 810 A 1 
HETATM 10 O O3 NAG . . . C 3 43.809 -3.632 24.093 1 60.19 ? O3 NAG 810 A 1 
HETATM 11 O O4 NAG . . . C 3 42.356 -5.846 25.135 1 59.08 ? O4 NAG 810 A 1 
HETATM 12 O O5 NAG . . . C 3 41.316 -3.113 27.404 1 55.37 ? O5 NAG 810 A 1 
HETATM 13 O O6 NAG . . . C 3 40.432 -6.572 27.423 1 58.2 ? O6 NAG 810 A 1 
HETATM 14 O O7 NAG . . . C 3 42.859 1.196 24.844 1 55.77 ? O7 NAG 810 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#