data_1WRI # _model_server_result.job_id HPj2bX4b4B79HVGaVDrl7Q _model_server_result.datetime_utc '2025-03-04 22:23:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1wri # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 1WRI # _exptl.entry_id 1WRI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 120.152 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BENZAMIDINE _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.94 _cell.angle_gamma 90 _cell.entry_id 1WRI _cell.length_a 97.544 _cell.length_b 29.411 _cell.length_c 32.561 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WRI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 37 A CYS 37 1_555 B FE1 FES . A FES 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc2 A SG CYS 42 A CYS 42 1_555 B FE1 FES . A FES 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc3 A SG CYS 45 A CYS 45 1_555 B FE2 FES . A FES 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc4 A SG CYS 75 A CYS 75 1_555 B FE2 FES . A FES 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? # _chem_comp.formula 'C7 H8 N2' _chem_comp.formula_weight 120.152 _chem_comp.id BEN _chem_comp.mon_nstd_flag . _chem_comp.name BENZAMIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BEN doub 54 n y C1 C6 BEN sing 55 n y C1 C BEN sing 56 n n C2 C3 BEN sing 57 n y C2 H2 BEN sing 58 n n C3 C4 BEN doub 59 n y C3 H3 BEN sing 60 n n C4 C5 BEN sing 61 n y C4 H4 BEN sing 62 n n C5 C6 BEN doub 63 n y C5 H5 BEN sing 64 n n C6 H6 BEN sing 65 n n C N1 BEN doub 66 e n C N2 BEN sing 67 n n N1 HN1 BEN sing 68 n n N2 HN21 BEN sing 69 n n N2 HN22 BEN sing 70 n n # _atom_sites.entry_id 1WRI _atom_sites.fract_transf_matrix[1][1] 0.010252 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002545 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034001 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.031644 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FES A 1 96 96 FES FES . C 3 BEN A 1 501 501 BEN BDN . D 3 BEN A 1 502 502 BEN BDN . E 3 BEN A 1 503 503 BEN BDN . F 3 BEN A 1 504 504 BEN BDN . G 3 BEN A 1 505 505 BEN BDN . H 3 BEN A 1 506 506 BEN BDN . I 3 BEN A 1 507 507 BEN BDN . J 4 HOH A 1 1001 1001 HOH HOH . J 4 HOH A 2 1002 1002 HOH HOH . J 4 HOH A 3 1003 1003 HOH HOH . J 4 HOH A 4 1004 1004 HOH HOH . J 4 HOH A 5 1005 1005 HOH HOH . J 4 HOH A 6 1006 1006 HOH HOH . J 4 HOH A 7 1007 1007 HOH HOH . J 4 HOH A 8 1008 1008 HOH HOH . J 4 HOH A 9 1009 1009 HOH HOH . J 4 HOH A 10 1010 1010 HOH HOH . J 4 HOH A 11 1011 1011 HOH HOH . J 4 HOH A 12 1012 1012 HOH HOH . J 4 HOH A 13 1013 1013 HOH HOH . J 4 HOH A 14 1014 1014 HOH HOH . J 4 HOH A 15 1015 1015 HOH HOH . J 4 HOH A 16 1016 1016 HOH HOH . J 4 HOH A 17 1017 1017 HOH HOH . J 4 HOH A 18 1018 1018 HOH HOH . J 4 HOH A 19 1019 1019 HOH HOH . J 4 HOH A 20 1020 1020 HOH HOH . J 4 HOH A 21 1021 1021 HOH HOH . J 4 HOH A 22 1022 1022 HOH HOH . J 4 HOH A 23 1023 1023 HOH HOH . J 4 HOH A 24 1024 1024 HOH HOH . J 4 HOH A 25 1026 1026 HOH HOH . J 4 HOH A 26 1027 1027 HOH HOH . J 4 HOH A 27 1028 1028 HOH HOH . J 4 HOH A 28 1029 1029 HOH HOH . J 4 HOH A 29 1030 1030 HOH HOH . J 4 HOH A 30 1031 1031 HOH HOH . J 4 HOH A 31 1032 1032 HOH HOH . J 4 HOH A 32 1033 1033 HOH HOH . J 4 HOH A 33 1034 1034 HOH HOH . J 4 HOH A 34 1035 1035 HOH HOH . J 4 HOH A 35 1036 1036 HOH HOH . J 4 HOH A 36 1037 1037 HOH HOH . J 4 HOH A 37 1039 1039 HOH HOH . J 4 HOH A 38 1040 1040 HOH HOH . J 4 HOH A 39 1041 1041 HOH HOH . J 4 HOH A 40 1042 1042 HOH HOH . J 4 HOH A 41 1043 1043 HOH HOH . J 4 HOH A 42 1044 1044 HOH HOH . J 4 HOH A 43 1045 1045 HOH HOH . J 4 HOH A 44 1046 1046 HOH HOH . J 4 HOH A 45 1047 1047 HOH HOH . J 4 HOH A 46 1048 1048 HOH HOH . J 4 HOH A 47 1049 1049 HOH HOH . J 4 HOH A 48 1050 1050 HOH HOH . J 4 HOH A 49 1051 1051 HOH HOH . J 4 HOH A 50 1052 1052 HOH HOH . J 4 HOH A 51 1053 1053 HOH HOH . J 4 HOH A 52 1054 1054 HOH HOH . J 4 HOH A 53 1056 1056 HOH HOH . J 4 HOH A 54 1057 1057 HOH HOH . J 4 HOH A 55 1058 1058 HOH HOH . J 4 HOH A 56 1059 1059 HOH HOH . J 4 HOH A 57 1060 1060 HOH HOH . J 4 HOH A 58 1061 1061 HOH HOH . J 4 HOH A 59 1062 1062 HOH HOH . J 4 HOH A 60 1064 1064 HOH HOH . J 4 HOH A 61 1065 1065 HOH HOH . J 4 HOH A 62 1066 1066 HOH HOH . J 4 HOH A 63 1067 1067 HOH HOH . J 4 HOH A 64 1068 1068 HOH HOH . J 4 HOH A 65 1069 1069 HOH HOH . J 4 HOH A 66 1070 1070 HOH HOH . J 4 HOH A 67 1071 1071 HOH HOH . J 4 HOH A 68 1072 1072 HOH HOH . J 4 HOH A 69 1073 1073 HOH HOH . J 4 HOH A 70 1074 1074 HOH HOH . J 4 HOH A 71 1075 1075 HOH HOH . J 4 HOH A 72 1076 1076 HOH HOH . J 4 HOH A 73 1077 1077 HOH HOH . J 4 HOH A 74 1078 1078 HOH HOH . J 4 HOH A 75 1079 1079 HOH HOH . J 4 HOH A 76 1080 1080 HOH HOH . J 4 HOH A 77 1081 1081 HOH HOH . J 4 HOH A 78 1082 1082 HOH HOH . J 4 HOH A 79 1083 1083 HOH HOH . J 4 HOH A 80 1084 1084 HOH HOH . J 4 HOH A 81 1086 1086 HOH HOH . J 4 HOH A 82 1087 1087 HOH HOH . J 4 HOH A 83 1088 1088 HOH HOH . J 4 HOH A 84 1089 1089 HOH HOH . J 4 HOH A 85 1090 1090 HOH HOH . J 4 HOH A 86 1091 1091 HOH HOH . J 4 HOH A 87 1092 1092 HOH HOH . J 4 HOH A 88 1094 1094 HOH HOH . J 4 HOH A 89 1095 1095 HOH HOH . J 4 HOH A 90 1096 1096 HOH HOH . J 4 HOH A 91 1097 1097 HOH HOH . J 4 HOH A 92 1098 1098 HOH HOH . J 4 HOH A 93 1099 1099 HOH HOH . J 4 HOH A 94 1100 1100 HOH HOH . J 4 HOH A 95 1101 1101 HOH HOH . J 4 HOH A 96 1102 1102 HOH HOH . J 4 HOH A 97 1103 1103 HOH HOH . J 4 HOH A 98 1104 1104 HOH HOH . J 4 HOH A 99 1105 1105 HOH HOH . J 4 HOH A 100 1106 1106 HOH HOH . J 4 HOH A 101 1107 1107 HOH HOH . J 4 HOH A 102 1108 1108 HOH HOH . J 4 HOH A 103 1109 1109 HOH HOH . J 4 HOH A 104 1111 1111 HOH HOH . J 4 HOH A 105 1112 1112 HOH HOH . J 4 HOH A 106 1114 1114 HOH HOH . J 4 HOH A 107 1115 1115 HOH HOH . J 4 HOH A 108 1116 1116 HOH HOH . J 4 HOH A 109 1117 1117 HOH HOH . J 4 HOH A 110 1119 1119 HOH HOH . J 4 HOH A 111 1120 1120 HOH HOH . J 4 HOH A 112 1121 1121 HOH HOH . J 4 HOH A 113 1122 1122 HOH HOH . J 4 HOH A 114 1123 1123 HOH HOH . J 4 HOH A 115 1124 1124 HOH HOH . J 4 HOH A 116 1125 1125 HOH HOH . J 4 HOH A 117 1126 1126 HOH HOH . J 4 HOH A 118 1127 1127 HOH HOH . J 4 HOH A 119 1128 1128 HOH HOH . J 4 HOH A 120 1130 1130 HOH HOH . J 4 HOH A 121 1131 1131 HOH HOH . J 4 HOH A 122 1132 1132 HOH HOH . J 4 HOH A 123 1133 1133 HOH HOH . J 4 HOH A 124 1134 1134 HOH HOH . J 4 HOH A 125 1135 1135 HOH HOH . J 4 HOH A 126 1136 1136 HOH HOH . J 4 HOH A 127 1139 1139 HOH HOH . J 4 HOH A 128 1140 1140 HOH HOH . J 4 HOH A 129 1141 1141 HOH HOH . J 4 HOH A 130 1142 1142 HOH HOH . J 4 HOH A 131 1143 1143 HOH HOH . J 4 HOH A 132 1144 1144 HOH HOH . J 4 HOH A 133 1145 1145 HOH HOH . J 4 HOH A 134 1147 1147 HOH HOH . J 4 HOH A 135 1149 1149 HOH HOH . J 4 HOH A 136 1150 1150 HOH HOH . J 4 HOH A 137 1151 1151 HOH HOH . J 4 HOH A 138 1152 1152 HOH HOH . J 4 HOH A 139 1153 1153 HOH HOH . J 4 HOH A 140 1154 1154 HOH HOH . J 4 HOH A 141 1155 1155 HOH HOH . J 4 HOH A 142 1156 1156 HOH HOH . J 4 HOH A 143 1157 1157 HOH HOH . J 4 HOH A 144 1158 1158 HOH HOH . J 4 HOH A 145 1159 1159 HOH HOH . J 4 HOH A 146 1160 1160 HOH HOH . J 4 HOH A 147 1163 1163 HOH HOH . J 4 HOH A 148 1164 1164 HOH HOH . J 4 HOH A 149 1165 1165 HOH HOH . J 4 HOH A 150 1166 1166 HOH HOH . J 4 HOH A 151 1168 1168 HOH HOH . J 4 HOH A 152 1170 1170 HOH HOH . J 4 HOH A 153 1171 1171 HOH HOH . J 4 HOH A 154 1173 1173 HOH HOH . J 4 HOH A 155 1174 1174 HOH HOH . J 4 HOH A 156 1176 1176 HOH HOH . J 4 HOH A 157 1177 1177 HOH HOH . J 4 HOH A 158 1178 1178 HOH HOH . J 4 HOH A 159 1179 1179 HOH HOH . J 4 HOH A 160 1181 1181 HOH HOH . J 4 HOH A 161 1182 1182 HOH HOH . J 4 HOH A 162 1183 1183 HOH HOH . J 4 HOH A 163 1187 1187 HOH HOH . J 4 HOH A 164 1188 1188 HOH HOH . J 4 HOH A 165 1190 1190 HOH HOH . J 4 HOH A 166 1191 1191 HOH HOH . J 4 HOH A 167 1197 1197 HOH HOH . J 4 HOH A 168 1198 1198 HOH HOH . J 4 HOH A 169 1200 1200 HOH HOH . J 4 HOH A 170 1202 1202 HOH HOH . J 4 HOH A 171 1203 1203 HOH HOH . J 4 HOH A 172 1205 1205 HOH HOH . J 4 HOH A 173 1207 1207 HOH HOH . J 4 HOH A 174 1208 1208 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BEN . . . D 3 23.315 26.412 0.99 1 11.86 ? C1 BEN 502 A 1 HETATM 2 C C2 BEN . . . D 3 23.262 27.528 1.791 1 11.28 ? C2 BEN 502 A 1 HETATM 3 C C3 BEN . . . D 3 23.75 27.514 3.111 1 12.91 ? C3 BEN 502 A 1 HETATM 4 C C4 BEN . . . D 3 24.301 26.318 3.561 1 14.23 ? C4 BEN 502 A 1 HETATM 5 C C5 BEN . . . D 3 24.4 25.221 2.755 1 14.1 ? C5 BEN 502 A 1 HETATM 6 C C6 BEN . . . D 3 23.846 25.212 1.468 1 14.13 ? C6 BEN 502 A 1 HETATM 7 C C BEN . . . D 3 22.782 26.508 -0.388 1 11.92 ? C BEN 502 A 1 HETATM 8 N N1 BEN . . . D 3 22.073 25.514 -0.883 1 14.08 ? N1 BEN 502 A 1 HETATM 9 N N2 BEN . . . D 3 23.039 27.613 -1.098 1 12.63 ? N2 BEN 502 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #