data_1WS2
#
_model_server_result.job_id            dE4Ub_I5EGQp2r5BJxv8cQ 
_model_server_result.datetime_utc      '2025-03-06 06:26:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ws2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":3900}' 
#
_entry.id    1WS2 
#
_exptl.entry_id    1WS2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              142.116 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5,6-DIAMINOPYRIMIDINE-2,4(1H,3H)-DIONE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1WS2 
_cell.length_a            140.181 
_cell.length_b            140.181 
_cell.length_c            151.176 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1WS2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SAC 1 A SAC 1 1_555 A N ALA 2 A ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 B C SAC 1 B SAC 1 1_555 B N ALA 2 B ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale3 C C SAC 1 C SAC 1 1_555 C N ALA 2 C ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 D C SAC 1 D SAC 1 1_555 D N ALA 2 D ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
#
_chem_comp.formula           'C4 H6 N4 O2' 
_chem_comp.formula_weight    142.116 
_chem_comp.id                URN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5,6-DIAMINOPYRIMIDINE-2,4(1H,3H)-DIONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     5,6-DIAMINOURACIL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O4 C4 URN doub 376 n n 
C4 N3 URN sing 377 n y 
C4 C5 URN sing 378 n y 
N3 C2 URN sing 379 n y 
N3 HN3 URN sing 380 n n 
C5 N5 URN sing 381 n n 
C5 C6 URN doub 382 n y 
N5 HN51 URN sing 383 n n 
N5 HN52 URN sing 384 n n 
C6 N6 URN sing 385 n n 
C6 N1 URN sing 386 n y 
N6 HN61 URN sing 387 n n 
N6 HN62 URN sing 388 n n 
N1 C2 URN sing 389 n y 
N1 HN1 URN sing 390 n n 
C2 O2 URN doub 391 n n 
#
_atom_sites.entry_id                     1WS2 
_atom_sites.fract_transf_matrix[1][1]    0.007134 
_atom_sites.fract_transf_matrix[1][2]    0.004119 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008237 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006615 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 URN A 1 900 900 URN URN . 
F 2 URN B 1 1900 900 URN URN . 
G 2 URN C 1 2900 900 URN URN . 
H 2 URN C 1 3900 900 URN URN . 
I 3 HOH A 1 1003 1003 HOH HOH . 
I 3 HOH A 2 1011 1011 HOH HOH . 
I 3 HOH A 3 1018 1018 HOH HOH . 
I 3 HOH A 4 1023 1023 HOH HOH . 
I 3 HOH A 5 1025 1025 HOH HOH . 
I 3 HOH A 6 1028 1028 HOH HOH . 
I 3 HOH A 7 1033 1033 HOH HOH . 
I 3 HOH A 8 1041 1041 HOH HOH . 
I 3 HOH A 9 1044 1044 HOH HOH . 
I 3 HOH A 10 1046 1046 HOH HOH . 
I 3 HOH A 11 1052 1052 HOH HOH . 
I 3 HOH A 12 1053 1053 HOH HOH . 
I 3 HOH A 13 1054 1054 HOH HOH . 
I 3 HOH A 14 1056 1056 HOH HOH . 
I 3 HOH A 15 1057 1057 HOH HOH . 
J 3 HOH B 1 1004 1004 HOH HOH . 
J 3 HOH B 2 1015 1015 HOH HOH . 
J 3 HOH B 3 1017 1017 HOH HOH . 
J 3 HOH B 4 1019 1019 HOH HOH . 
J 3 HOH B 5 1021 1021 HOH HOH . 
J 3 HOH B 6 1029 1029 HOH HOH . 
J 3 HOH B 7 1030 1030 HOH HOH . 
J 3 HOH B 8 1031 1031 HOH HOH . 
J 3 HOH B 9 1035 1035 HOH HOH . 
J 3 HOH B 10 1036 1036 HOH HOH . 
J 3 HOH B 11 1037 1037 HOH HOH . 
J 3 HOH B 12 1038 1038 HOH HOH . 
J 3 HOH B 13 1040 1040 HOH HOH . 
J 3 HOH B 14 1042 1042 HOH HOH . 
J 3 HOH B 15 1049 1049 HOH HOH . 
J 3 HOH B 16 1050 1050 HOH HOH . 
K 3 HOH C 1 1001 1001 HOH HOH . 
K 3 HOH C 2 1002 1002 HOH HOH . 
K 3 HOH C 3 1005 1005 HOH HOH . 
K 3 HOH C 4 1008 1008 HOH HOH . 
K 3 HOH C 5 1009 1009 HOH HOH . 
K 3 HOH C 6 1013 1013 HOH HOH . 
K 3 HOH C 7 1022 1022 HOH HOH . 
K 3 HOH C 8 1032 1032 HOH HOH . 
K 3 HOH C 9 1039 1039 HOH HOH . 
K 3 HOH C 10 1045 1045 HOH HOH . 
K 3 HOH C 11 1048 1048 HOH HOH . 
K 3 HOH C 12 1051 1051 HOH HOH . 
K 3 HOH C 13 1055 1055 HOH HOH . 
L 3 HOH D 1 1006 1006 HOH HOH . 
L 3 HOH D 2 1007 1007 HOH HOH . 
L 3 HOH D 3 1010 1010 HOH HOH . 
L 3 HOH D 4 1012 1012 HOH HOH . 
L 3 HOH D 5 1014 1014 HOH HOH . 
L 3 HOH D 6 1016 1016 HOH HOH . 
L 3 HOH D 7 1020 1020 HOH HOH . 
L 3 HOH D 8 1024 1024 HOH HOH . 
L 3 HOH D 9 1026 1026 HOH HOH . 
L 3 HOH D 10 1027 1027 HOH HOH . 
L 3 HOH D 11 1034 1034 HOH HOH . 
L 3 HOH D 12 1043 1043 HOH HOH . 
L 3 HOH D 13 1047 1047 HOH HOH . 
L 3 HOH D 14 1058 1058 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O4 URN . . . H 2 60.398 21.683 12.057 0.5 29.67 ? O4 URN 3900 C 1 
HETATM 2 C C4 URN . . . H 2 60.053 20.644 12.653 0.5 32.22 ? C4 URN 3900 C 1 
HETATM 3 N N3 URN . . . H 2 60.314 20.493 13.947 0.5 35.09 ? N3 URN 3900 C 1 
HETATM 4 C C5 URN . . . H 2 59.351 19.547 11.958 0.5 29.21 ? C5 URN 3900 C 1 
HETATM 5 N N5 URN . . . H 2 59.116 19.769 10.695 0.5 31.56 ? N5 URN 3900 C 1 
HETATM 6 C C6 URN . . . H 2 58.918 18.284 12.622 0.5 31.69 ? C6 URN 3900 C 1 
HETATM 7 N N6 URN . . . H 2 58.234 17.268 11.904 0.5 27.59 ? N6 URN 3900 C 1 
HETATM 8 N N1 URN . . . H 2 59.236 18.267 13.98 0.5 33.37 ? N1 URN 3900 C 1 
HETATM 9 C C2 URN . . . H 2 59.909 19.362 14.585 0.5 36.16 ? C2 URN 3900 C 1 
HETATM 10 O O2 URN . . . H 2 60.205 19.415 15.801 0.5 36.15 ? O2 URN 3900 C 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           243 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
#