data_1WS5 # _model_server_result.job_id '_J15MOKh_uLTRmEk2QlyAg' _model_server_result.datetime_utc '2024-10-13 06:23:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ws5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":501}' # _entry.id 1WS5 # _exptl.entry_id 1WS5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.182 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'methyl alpha-D-mannopyranoside' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1WS5 _cell.length_a 78.477 _cell.length_b 99.097 _cell.length_c 105.659 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WS5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N # _chem_comp.formula 'C7 H14 O6' _chem_comp.formula_weight 194.182 _chem_comp.id MMA _chem_comp.mon_nstd_flag n _chem_comp.name 'methyl alpha-D-mannopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'O1-METHYL-MANNOSE;methyl alpha-D-mannoside;methyl D-mannoside;methyl mannoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MMA sing 224 n n C1 O1 MMA sing 225 n n C1 O5 MMA sing 226 n n C1 H1 MMA sing 227 n n C2 C3 MMA sing 228 n n C2 O2 MMA sing 229 n n C2 H2 MMA sing 230 n n C3 C4 MMA sing 231 n n C3 O3 MMA sing 232 n n C3 H3 MMA sing 233 n n C4 C5 MMA sing 234 n n C4 O4 MMA sing 235 n n C4 H4 MMA sing 236 n n C5 C6 MMA sing 237 n n C5 O5 MMA sing 238 n n C5 H5 MMA sing 239 n n C6 O6 MMA sing 240 n n C6 H61 MMA sing 241 n n C6 H62 MMA sing 242 n n C7 O1 MMA sing 243 n n C7 H71 MMA sing 244 n n C7 H72 MMA sing 245 n n C7 H73 MMA sing 246 n n O2 HO2 MMA sing 247 n n O3 HO3 MMA sing 248 n n O4 HO4 MMA sing 249 n n O6 HO6 MMA sing 250 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MMA DManp[1Me]a 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MMA 1-methyl-a-D-mannopyranose 'COMMON NAME' GMML 1 MMA o1-methyl-mannose 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 # _atom_sites.entry_id 1WS5 _atom_sites.fract_transf_matrix[1][1] 0.012743 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010091 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009464 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 4 MMA A 1 501 501 MMA MAM . J 4 MMA C 1 502 502 MMA MAM . K 4 MMA E 1 503 503 MMA MAM . L 4 MMA G 1 504 504 MMA MAM . M 5 HOH A 1 211 211 HOH HOH . M 5 HOH A 2 213 213 HOH HOH . M 5 HOH A 3 214 214 HOH HOH . M 5 HOH A 4 218 218 HOH HOH . M 5 HOH A 5 220 220 HOH HOH . M 5 HOH A 6 223 223 HOH HOH . M 5 HOH A 7 225 225 HOH HOH . M 5 HOH A 8 235 235 HOH HOH . M 5 HOH A 9 247 247 HOH HOH . M 5 HOH A 10 253 253 HOH HOH . M 5 HOH A 11 262 262 HOH HOH . M 5 HOH A 12 266 266 HOH HOH . M 5 HOH A 13 271 271 HOH HOH . M 5 HOH A 14 275 275 HOH HOH . M 5 HOH A 15 276 276 HOH HOH . M 5 HOH A 16 280 280 HOH HOH . M 5 HOH A 17 283 283 HOH HOH . M 5 HOH A 18 289 289 HOH HOH . M 5 HOH A 19 291 291 HOH HOH . M 5 HOH A 20 299 299 HOH HOH . M 5 HOH A 21 307 307 HOH HOH . M 5 HOH A 22 322 322 HOH HOH . M 5 HOH A 23 328 328 HOH HOH . M 5 HOH A 24 335 335 HOH HOH . M 5 HOH A 25 341 341 HOH HOH . M 5 HOH A 26 347 347 HOH HOH . M 5 HOH A 27 350 350 HOH HOH . M 5 HOH A 28 352 352 HOH HOH . M 5 HOH A 29 357 357 HOH HOH . M 5 HOH A 30 359 359 HOH HOH . M 5 HOH A 31 360 360 HOH HOH . M 5 HOH A 32 362 362 HOH HOH . M 5 HOH A 33 365 365 HOH HOH . M 5 HOH A 34 366 366 HOH HOH . M 5 HOH A 35 371 371 HOH HOH . M 5 HOH A 36 373 373 HOH HOH . M 5 HOH A 37 374 374 HOH HOH . M 5 HOH A 38 375 375 HOH HOH . M 5 HOH A 39 376 376 HOH HOH . M 5 HOH A 40 377 377 HOH HOH . M 5 HOH A 41 378 378 HOH HOH . M 5 HOH A 42 416 416 HOH HOH . M 5 HOH A 43 418 418 HOH HOH . M 5 HOH A 44 419 419 HOH HOH . M 5 HOH A 45 420 420 HOH HOH . M 5 HOH A 46 424 424 HOH HOH . M 5 HOH A 47 427 427 HOH HOH . M 5 HOH A 48 434 434 HOH HOH . M 5 HOH A 49 437 437 HOH HOH . M 5 HOH A 50 438 438 HOH HOH . M 5 HOH A 51 439 439 HOH HOH . M 5 HOH A 52 440 440 HOH HOH . M 5 HOH A 53 447 447 HOH HOH . M 5 HOH A 54 448 448 HOH HOH . N 5 HOH B 1 224 224 HOH HOH . N 5 HOH B 2 237 237 HOH HOH . N 5 HOH B 3 273 273 HOH HOH . N 5 HOH B 4 431 431 HOH HOH . N 5 HOH B 5 453 453 HOH HOH . O 5 HOH C 1 201 201 HOH HOH . O 5 HOH C 2 203 203 HOH HOH . O 5 HOH C 3 204 204 HOH HOH . O 5 HOH C 4 205 205 HOH HOH . O 5 HOH C 5 208 208 HOH HOH . O 5 HOH C 6 209 209 HOH HOH . O 5 HOH C 7 226 226 HOH HOH . O 5 HOH C 8 236 236 HOH HOH . O 5 HOH C 9 241 241 HOH HOH . O 5 HOH C 10 245 245 HOH HOH . O 5 HOH C 11 248 248 HOH HOH . O 5 HOH C 12 249 249 HOH HOH . O 5 HOH C 13 250 250 HOH HOH . O 5 HOH C 14 255 255 HOH HOH . O 5 HOH C 15 258 258 HOH HOH . O 5 HOH C 16 259 259 HOH HOH . O 5 HOH C 17 263 263 HOH HOH . O 5 HOH C 18 265 265 HOH HOH . O 5 HOH C 19 274 274 HOH HOH . O 5 HOH C 20 281 281 HOH HOH . O 5 HOH C 21 284 284 HOH HOH . O 5 HOH C 22 285 285 HOH HOH . O 5 HOH C 23 286 286 HOH HOH . O 5 HOH C 24 288 288 HOH HOH . O 5 HOH C 25 294 294 HOH HOH . O 5 HOH C 26 298 298 HOH HOH . O 5 HOH C 27 301 301 HOH HOH . O 5 HOH C 28 303 303 HOH HOH . O 5 HOH C 29 305 305 HOH HOH . O 5 HOH C 30 311 311 HOH HOH . O 5 HOH C 31 314 314 HOH HOH . O 5 HOH C 32 319 319 HOH HOH . O 5 HOH C 33 324 324 HOH HOH . O 5 HOH C 34 326 326 HOH HOH . O 5 HOH C 35 327 327 HOH HOH . O 5 HOH C 36 331 331 HOH HOH . O 5 HOH C 37 339 339 HOH HOH . O 5 HOH C 38 343 343 HOH HOH . O 5 HOH C 39 346 346 HOH HOH . O 5 HOH C 40 354 354 HOH HOH . O 5 HOH C 41 356 356 HOH HOH . O 5 HOH C 42 361 361 HOH HOH . O 5 HOH C 43 363 363 HOH HOH . O 5 HOH C 44 364 364 HOH HOH . O 5 HOH C 45 383 383 HOH HOH . O 5 HOH C 46 384 384 HOH HOH . O 5 HOH C 47 385 385 HOH HOH . O 5 HOH C 48 388 388 HOH HOH . O 5 HOH C 49 389 389 HOH HOH . O 5 HOH C 50 390 390 HOH HOH . O 5 HOH C 51 392 392 HOH HOH . O 5 HOH C 52 393 393 HOH HOH . O 5 HOH C 53 394 394 HOH HOH . O 5 HOH C 54 395 395 HOH HOH . O 5 HOH C 55 396 396 HOH HOH . O 5 HOH C 56 417 417 HOH HOH . O 5 HOH C 57 425 425 HOH HOH . O 5 HOH C 58 428 428 HOH HOH . O 5 HOH C 59 435 435 HOH HOH . O 5 HOH C 60 451 451 HOH HOH . O 5 HOH C 61 452 452 HOH HOH . O 5 HOH C 62 456 456 HOH HOH . P 5 HOH D 1 210 210 HOH HOH . P 5 HOH D 2 246 246 HOH HOH . P 5 HOH D 3 308 308 HOH HOH . P 5 HOH D 4 325 325 HOH HOH . P 5 HOH D 5 370 370 HOH HOH . P 5 HOH D 6 432 432 HOH HOH . Q 5 HOH E 1 215 215 HOH HOH . Q 5 HOH E 2 222 222 HOH HOH . Q 5 HOH E 3 227 227 HOH HOH . Q 5 HOH E 4 228 228 HOH HOH . Q 5 HOH E 5 229 229 HOH HOH . Q 5 HOH E 6 234 234 HOH HOH . Q 5 HOH E 7 238 238 HOH HOH . Q 5 HOH E 8 240 240 HOH HOH . Q 5 HOH E 9 243 243 HOH HOH . Q 5 HOH E 10 244 244 HOH HOH . Q 5 HOH E 11 254 254 HOH HOH . Q 5 HOH E 12 256 256 HOH HOH . Q 5 HOH E 13 257 257 HOH HOH . Q 5 HOH E 14 264 264 HOH HOH . Q 5 HOH E 15 269 269 HOH HOH . Q 5 HOH E 16 272 272 HOH HOH . Q 5 HOH E 17 278 278 HOH HOH . Q 5 HOH E 18 282 282 HOH HOH . Q 5 HOH E 19 287 287 HOH HOH . Q 5 HOH E 20 290 290 HOH HOH . Q 5 HOH E 21 292 292 HOH HOH . Q 5 HOH E 22 293 293 HOH HOH . Q 5 HOH E 23 295 295 HOH HOH . Q 5 HOH E 24 304 304 HOH HOH . Q 5 HOH E 25 309 309 HOH HOH . Q 5 HOH E 26 312 312 HOH HOH . Q 5 HOH E 27 313 313 HOH HOH . Q 5 HOH E 28 317 317 HOH HOH . Q 5 HOH E 29 330 330 HOH HOH . Q 5 HOH E 30 334 334 HOH HOH . Q 5 HOH E 31 337 337 HOH HOH . Q 5 HOH E 32 338 338 HOH HOH . Q 5 HOH E 33 340 340 HOH HOH . Q 5 HOH E 34 351 351 HOH HOH . Q 5 HOH E 35 358 358 HOH HOH . Q 5 HOH E 36 367 367 HOH HOH . Q 5 HOH E 37 368 368 HOH HOH . Q 5 HOH E 38 382 382 HOH HOH . Q 5 HOH E 39 386 386 HOH HOH . Q 5 HOH E 40 387 387 HOH HOH . Q 5 HOH E 41 398 398 HOH HOH . Q 5 HOH E 42 399 399 HOH HOH . Q 5 HOH E 43 400 400 HOH HOH . Q 5 HOH E 44 401 401 HOH HOH . Q 5 HOH E 45 402 402 HOH HOH . Q 5 HOH E 46 403 403 HOH HOH . Q 5 HOH E 47 404 404 HOH HOH . Q 5 HOH E 48 415 415 HOH HOH . Q 5 HOH E 49 422 422 HOH HOH . Q 5 HOH E 50 423 423 HOH HOH . Q 5 HOH E 51 426 426 HOH HOH . Q 5 HOH E 52 429 429 HOH HOH . Q 5 HOH E 53 430 430 HOH HOH . Q 5 HOH E 54 436 436 HOH HOH . Q 5 HOH E 55 441 441 HOH HOH . Q 5 HOH E 56 442 442 HOH HOH . Q 5 HOH E 57 443 443 HOH HOH . Q 5 HOH E 58 454 454 HOH HOH . Q 5 HOH E 59 457 457 HOH HOH . R 5 HOH F 1 219 219 HOH HOH . R 5 HOH F 2 221 221 HOH HOH . R 5 HOH F 3 232 232 HOH HOH . R 5 HOH F 4 296 296 HOH HOH . R 5 HOH F 5 342 342 HOH HOH . S 5 HOH G 1 206 206 HOH HOH . S 5 HOH G 2 207 207 HOH HOH . S 5 HOH G 3 212 212 HOH HOH . S 5 HOH G 4 216 216 HOH HOH . S 5 HOH G 5 217 217 HOH HOH . S 5 HOH G 6 230 230 HOH HOH . S 5 HOH G 7 231 231 HOH HOH . S 5 HOH G 8 239 239 HOH HOH . S 5 HOH G 9 242 242 HOH HOH . S 5 HOH G 10 251 251 HOH HOH . S 5 HOH G 11 252 252 HOH HOH . S 5 HOH G 12 260 260 HOH HOH . S 5 HOH G 13 261 261 HOH HOH . S 5 HOH G 14 267 267 HOH HOH . S 5 HOH G 15 268 268 HOH HOH . S 5 HOH G 16 270 270 HOH HOH . S 5 HOH G 17 279 279 HOH HOH . S 5 HOH G 18 300 300 HOH HOH . S 5 HOH G 19 302 302 HOH HOH . S 5 HOH G 20 306 306 HOH HOH . S 5 HOH G 21 310 310 HOH HOH . S 5 HOH G 22 315 315 HOH HOH . S 5 HOH G 23 316 316 HOH HOH . S 5 HOH G 24 318 318 HOH HOH . S 5 HOH G 25 321 321 HOH HOH . S 5 HOH G 26 323 323 HOH HOH . S 5 HOH G 27 329 329 HOH HOH . S 5 HOH G 28 332 332 HOH HOH . S 5 HOH G 29 333 333 HOH HOH . S 5 HOH G 30 336 336 HOH HOH . S 5 HOH G 31 344 344 HOH HOH . S 5 HOH G 32 348 348 HOH HOH . S 5 HOH G 33 349 349 HOH HOH . S 5 HOH G 34 353 353 HOH HOH . S 5 HOH G 35 355 355 HOH HOH . S 5 HOH G 36 369 369 HOH HOH . S 5 HOH G 37 372 372 HOH HOH . S 5 HOH G 38 379 379 HOH HOH . S 5 HOH G 39 380 380 HOH HOH . S 5 HOH G 40 381 381 HOH HOH . S 5 HOH G 41 405 405 HOH HOH . S 5 HOH G 42 406 406 HOH HOH . S 5 HOH G 43 407 407 HOH HOH . S 5 HOH G 44 408 408 HOH HOH . S 5 HOH G 45 409 409 HOH HOH . S 5 HOH G 46 410 410 HOH HOH . S 5 HOH G 47 411 411 HOH HOH . S 5 HOH G 48 412 412 HOH HOH . S 5 HOH G 49 413 413 HOH HOH . S 5 HOH G 50 414 414 HOH HOH . S 5 HOH G 51 421 421 HOH HOH . S 5 HOH G 52 433 433 HOH HOH . S 5 HOH G 53 444 444 HOH HOH . S 5 HOH G 54 445 445 HOH HOH . S 5 HOH G 55 446 446 HOH HOH . S 5 HOH G 56 449 449 HOH HOH . S 5 HOH G 57 450 450 HOH HOH . S 5 HOH G 58 455 455 HOH HOH . T 5 HOH H 1 202 202 HOH HOH . T 5 HOH H 2 233 233 HOH HOH . T 5 HOH H 3 277 277 HOH HOH . T 5 HOH H 4 297 297 HOH HOH . T 5 HOH H 5 320 320 HOH HOH . T 5 HOH H 6 345 345 HOH HOH . T 5 HOH H 7 391 391 HOH HOH . T 5 HOH H 8 397 397 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MMA . . . I 4 51.382 54.259 66.504 1 25.15 ? C1 MMA 501 A 1 HETATM 2 C C2 MMA . . . I 4 51.989 55.614 66.033 1 24.79 ? C2 MMA 501 A 1 HETATM 3 C C3 MMA . . . I 4 51.874 56.68 67.133 1 23.21 ? C3 MMA 501 A 1 HETATM 4 C C4 MMA . . . I 4 50.398 56.845 67.538 1 22.45 ? C4 MMA 501 A 1 HETATM 5 C C5 MMA . . . I 4 49.864 55.489 68.034 1 22.16 ? C5 MMA 501 A 1 HETATM 6 C C6 MMA . . . I 4 48.393 55.578 68.433 1 20.27 ? C6 MMA 501 A 1 HETATM 7 C C7 MMA . . . I 4 52.55 52.325 67.974 1 31.31 ? C7 MMA 501 A 1 HETATM 8 O O1 MMA . . . I 4 52.288 53.605 67.303 1 28.46 ? O1 MMA 501 A 1 HETATM 9 O O2 MMA . . . I 4 51.36 56.089 64.848 1 24.27 ? O2 MMA 501 A 1 HETATM 10 O O3 MMA . . . I 4 52.419 57.907 66.667 1 23.13 ? O3 MMA 501 A 1 HETATM 11 O O4 MMA . . . I 4 50.28 57.823 68.552 1 21.47 ? O4 MMA 501 A 1 HETATM 12 O O5 MMA . . . I 4 49.995 54.5 66.967 1 23.6 ? O5 MMA 501 A 1 HETATM 13 O O6 MMA . . . I 4 47.541 55.896 67.339 1 19.85 ? O6 MMA 501 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #