data_1WT9 # _model_server_result.job_id AWRldaN69jloiAsPfvZhJg _model_server_result.datetime_utc '2024-11-09 02:15:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1wt9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1002}' # _entry.id 1WT9 # _exptl.entry_id 1WT9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.7 _cell.angle_gamma 90 _cell.entry_id 1WT9 _cell.length_a 35.079 _cell.length_b 53.749 _cell.length_c 67.906 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WT9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2 A CYS 2 1_555 A SG CYS 13 A CYS 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf3 A SG CYS 79 A CYS 79 1_555 B SG CYS 75 B CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 102 A CYS 102 1_555 A SG CYS 119 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf5 B SG CYS 2 B CYS 2 1_555 B SG CYS 13 B CYS 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf6 B SG CYS 30 B CYS 30 1_555 B SG CYS 119 B CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 B SG CYS 96 B CYS 96 1_555 B SG CYS 111 B CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A OG SER 41 A SER 41 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc2 A O SER 41 A SER 41 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc3 A OE1 GLU 47 A GLU 47 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.122 ? metalc ? metalc4 A OE2 GLU 47 A GLU 47 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc5 A OE1 GLU 128 A GLU 128 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc6 A OE2 GLU 128 A GLU 128 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc7 B O SER 41 B SER 41 1_555 D CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc8 B OG SER 41 B SER 41 1_555 D CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? metalc ? metalc9 B OE1 GLN 43 B GLN 43 1_555 D CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? metalc ? metalc10 B OE1 GLU 47 B GLU 47 1_555 D CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.253 ? metalc ? metalc11 B OE2 GLU 47 B GLU 47 1_555 D CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc12 B OE1 GLU 120 B GLU 120 1_555 D CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.867 ? metalc ? metalc13 B OE2 GLU 120 B GLU 120 1_555 D CA CA . B CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1WT9 _atom_sites.fract_transf_matrix[1][1] 0.028507 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004362 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018605 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014898 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 1001 1001 CA CA . D 3 CA B 1 1002 1002 CA CA . E 4 HOH A 1 1002 1 HOH HOH . E 4 HOH A 2 1003 2 HOH HOH . E 4 HOH A 3 1004 4 HOH HOH . E 4 HOH A 4 1005 5 HOH HOH . E 4 HOH A 5 1006 7 HOH HOH . E 4 HOH A 6 1007 8 HOH HOH . E 4 HOH A 7 1008 9 HOH HOH . E 4 HOH A 8 1009 10 HOH HOH . E 4 HOH A 9 1010 11 HOH HOH . E 4 HOH A 10 1011 12 HOH HOH . E 4 HOH A 11 1012 13 HOH HOH . E 4 HOH A 12 1013 14 HOH HOH . E 4 HOH A 13 1014 15 HOH HOH . E 4 HOH A 14 1015 18 HOH HOH . E 4 HOH A 15 1016 23 HOH HOH . E 4 HOH A 16 1017 25 HOH HOH . E 4 HOH A 17 1018 28 HOH HOH . E 4 HOH A 18 1019 29 HOH HOH . E 4 HOH A 19 1020 31 HOH HOH . E 4 HOH A 20 1021 32 HOH HOH . E 4 HOH A 21 1022 39 HOH HOH . E 4 HOH A 22 1023 40 HOH HOH . E 4 HOH A 23 1024 45 HOH HOH . E 4 HOH A 24 1025 46 HOH HOH . E 4 HOH A 25 1026 47 HOH HOH . E 4 HOH A 26 1027 48 HOH HOH . E 4 HOH A 27 1028 50 HOH HOH . E 4 HOH A 28 1029 51 HOH HOH . E 4 HOH A 29 1030 52 HOH HOH . E 4 HOH A 30 1031 53 HOH HOH . E 4 HOH A 31 1032 54 HOH HOH . E 4 HOH A 32 1033 56 HOH HOH . E 4 HOH A 33 1034 57 HOH HOH . E 4 HOH A 34 1035 60 HOH HOH . E 4 HOH A 35 1036 61 HOH HOH . E 4 HOH A 36 1037 62 HOH HOH . E 4 HOH A 37 1038 63 HOH HOH . E 4 HOH A 38 1039 67 HOH HOH . E 4 HOH A 39 1040 68 HOH HOH . E 4 HOH A 40 1041 69 HOH HOH . E 4 HOH A 41 1042 70 HOH HOH . E 4 HOH A 42 1043 72 HOH HOH . E 4 HOH A 43 1044 73 HOH HOH . E 4 HOH A 44 1045 77 HOH HOH . E 4 HOH A 45 1046 78 HOH HOH . E 4 HOH A 46 1047 79 HOH HOH . E 4 HOH A 47 1048 80 HOH HOH . E 4 HOH A 48 1049 82 HOH HOH . E 4 HOH A 49 1050 83 HOH HOH . E 4 HOH A 50 1051 84 HOH HOH . E 4 HOH A 51 1052 88 HOH HOH . E 4 HOH A 52 1053 89 HOH HOH . E 4 HOH A 53 1054 91 HOH HOH . E 4 HOH A 54 1055 94 HOH HOH . E 4 HOH A 55 1056 100 HOH HOH . E 4 HOH A 56 1057 101 HOH HOH . E 4 HOH A 57 1058 103 HOH HOH . E 4 HOH A 58 1059 106 HOH HOH . E 4 HOH A 59 1060 108 HOH HOH . E 4 HOH A 60 1061 109 HOH HOH . E 4 HOH A 61 1062 111 HOH HOH . E 4 HOH A 62 1063 113 HOH HOH . E 4 HOH A 63 1064 114 HOH HOH . E 4 HOH A 64 1065 117 HOH HOH . F 4 HOH B 1 1003 6 HOH HOH . F 4 HOH B 2 1004 16 HOH HOH . F 4 HOH B 3 1005 17 HOH HOH . F 4 HOH B 4 1006 19 HOH HOH . F 4 HOH B 5 1007 20 HOH HOH . F 4 HOH B 6 1008 21 HOH HOH . F 4 HOH B 7 1009 22 HOH HOH . F 4 HOH B 8 1010 24 HOH HOH . F 4 HOH B 9 1011 26 HOH HOH . F 4 HOH B 10 1012 27 HOH HOH . F 4 HOH B 11 1013 30 HOH HOH . F 4 HOH B 12 1014 33 HOH HOH . F 4 HOH B 13 1015 34 HOH HOH . F 4 HOH B 14 1016 35 HOH HOH . F 4 HOH B 15 1017 36 HOH HOH . F 4 HOH B 16 1018 37 HOH HOH . F 4 HOH B 17 1019 38 HOH HOH . F 4 HOH B 18 1020 41 HOH HOH . F 4 HOH B 19 1021 42 HOH HOH . F 4 HOH B 20 1022 43 HOH HOH . F 4 HOH B 21 1023 44 HOH HOH . F 4 HOH B 22 1024 49 HOH HOH . F 4 HOH B 23 1025 55 HOH HOH . F 4 HOH B 24 1026 58 HOH HOH . F 4 HOH B 25 1027 59 HOH HOH . F 4 HOH B 26 1028 64 HOH HOH . F 4 HOH B 27 1029 65 HOH HOH . F 4 HOH B 28 1030 66 HOH HOH . F 4 HOH B 29 1031 71 HOH HOH . F 4 HOH B 30 1032 74 HOH HOH . F 4 HOH B 31 1033 75 HOH HOH . F 4 HOH B 32 1034 76 HOH HOH . F 4 HOH B 33 1035 81 HOH HOH . F 4 HOH B 34 1036 85 HOH HOH . F 4 HOH B 35 1037 86 HOH HOH . F 4 HOH B 36 1038 90 HOH HOH . F 4 HOH B 37 1039 92 HOH HOH . F 4 HOH B 38 1040 93 HOH HOH . F 4 HOH B 39 1041 95 HOH HOH . F 4 HOH B 40 1042 96 HOH HOH . F 4 HOH B 41 1043 97 HOH HOH . F 4 HOH B 42 1044 98 HOH HOH . F 4 HOH B 43 1045 104 HOH HOH . F 4 HOH B 44 1046 105 HOH HOH . F 4 HOH B 45 1047 107 HOH HOH . F 4 HOH B 46 1048 110 HOH HOH . F 4 HOH B 47 1049 112 HOH HOH . F 4 HOH B 48 1050 115 HOH HOH . F 4 HOH B 49 1051 116 HOH HOH . F 4 HOH B 50 1052 119 HOH HOH . F 4 HOH B 51 1053 121 HOH HOH . F 4 HOH B 52 1054 124 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 13.988 _atom_site.Cartn_y -8.82 _atom_site.Cartn_z -9.722 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.47 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1002 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #