data_1WTH # _model_server_result.job_id g3ImK7zK4rDa8pWizzeL3g _model_server_result.datetime_utc '2025-04-22 16:12:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1wth # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":586}' # _entry.id 1WTH # _exptl.entry_id 1WTH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1WTH _cell.length_a 137.134 _cell.length_b 137.134 _cell.length_c 396.042 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WTH _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OE2 _struct_conn.ptnr1_label_comp_id GLU _struct_conn.ptnr1_label_seq_id 552 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id GLU _struct_conn.ptnr1_auth_seq_id 552 _struct_conn.ptnr1_symmetry 3_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id K _struct_conn.ptnr2_label_comp_id K _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id K _struct_conn.ptnr2_auth_seq_id 585 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 3.708 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 1WTH _atom_sites.fract_transf_matrix[1][1] 0.007292 _atom_sites.fract_transf_matrix[1][2] 0.00421 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00842 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002525 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 K A 1 585 401 K K . D 4 PO4 A 1 586 402 PO4 PO4 . E 5 HOH A 1 587 403 HOH HOH . E 5 HOH A 2 588 405 HOH HOH . E 5 HOH A 3 589 407 HOH HOH . E 5 HOH A 4 590 408 HOH HOH . E 5 HOH A 5 591 409 HOH HOH . E 5 HOH A 6 592 410 HOH HOH . E 5 HOH A 7 593 411 HOH HOH . E 5 HOH A 8 594 412 HOH HOH . E 5 HOH A 9 595 414 HOH HOH . E 5 HOH A 10 596 416 HOH HOH . E 5 HOH A 11 597 417 HOH HOH . E 5 HOH A 12 598 418 HOH HOH . E 5 HOH A 13 599 420 HOH HOH . E 5 HOH A 14 600 421 HOH HOH . E 5 HOH A 15 601 422 HOH HOH . E 5 HOH A 16 602 423 HOH HOH . E 5 HOH A 17 603 424 HOH HOH . E 5 HOH A 18 604 425 HOH HOH . E 5 HOH A 19 605 428 HOH HOH . E 5 HOH A 20 606 429 HOH HOH . E 5 HOH A 21 607 431 HOH HOH . E 5 HOH A 22 608 432 HOH HOH . E 5 HOH A 23 609 433 HOH HOH . E 5 HOH A 24 610 434 HOH HOH . E 5 HOH A 25 611 435 HOH HOH . E 5 HOH A 26 612 436 HOH HOH . E 5 HOH A 27 613 438 HOH HOH . E 5 HOH A 28 614 439 HOH HOH . E 5 HOH A 29 615 440 HOH HOH . E 5 HOH A 30 616 441 HOH HOH . E 5 HOH A 31 617 442 HOH HOH . E 5 HOH A 32 618 443 HOH HOH . E 5 HOH A 33 619 444 HOH HOH . E 5 HOH A 34 620 446 HOH HOH . E 5 HOH A 35 621 447 HOH HOH . E 5 HOH A 36 622 449 HOH HOH . E 5 HOH A 37 623 451 HOH HOH . E 5 HOH A 38 624 453 HOH HOH . E 5 HOH A 39 625 454 HOH HOH . E 5 HOH A 40 626 455 HOH HOH . E 5 HOH A 41 627 456 HOH HOH . E 5 HOH A 42 628 457 HOH HOH . E 5 HOH A 43 629 458 HOH HOH . E 5 HOH A 44 630 460 HOH HOH . E 5 HOH A 45 631 461 HOH HOH . E 5 HOH A 46 632 463 HOH HOH . E 5 HOH A 47 633 465 HOH HOH . E 5 HOH A 48 634 467 HOH HOH . E 5 HOH A 49 635 469 HOH HOH . E 5 HOH A 50 636 470 HOH HOH . E 5 HOH A 51 637 471 HOH HOH . E 5 HOH A 52 638 472 HOH HOH . E 5 HOH A 53 639 479 HOH HOH . E 5 HOH A 54 640 480 HOH HOH . E 5 HOH A 55 641 481 HOH HOH . E 5 HOH A 56 642 482 HOH HOH . E 5 HOH A 57 643 483 HOH HOH . E 5 HOH A 58 644 484 HOH HOH . E 5 HOH A 59 645 485 HOH HOH . E 5 HOH A 60 646 487 HOH HOH . E 5 HOH A 61 647 488 HOH HOH . E 5 HOH A 62 648 489 HOH HOH . E 5 HOH A 63 649 491 HOH HOH . E 5 HOH A 64 650 492 HOH HOH . E 5 HOH A 65 651 493 HOH HOH . E 5 HOH A 66 652 494 HOH HOH . E 5 HOH A 67 653 495 HOH HOH . E 5 HOH A 68 654 497 HOH HOH . E 5 HOH A 69 655 498 HOH HOH . E 5 HOH A 70 656 500 HOH HOH . E 5 HOH A 71 657 501 HOH HOH . E 5 HOH A 72 658 504 HOH HOH . E 5 HOH A 73 659 505 HOH HOH . E 5 HOH A 74 660 507 HOH HOH . E 5 HOH A 75 661 509 HOH HOH . E 5 HOH A 76 662 510 HOH HOH . E 5 HOH A 77 663 511 HOH HOH . E 5 HOH A 78 664 512 HOH HOH . E 5 HOH A 79 665 513 HOH HOH . E 5 HOH A 80 666 514 HOH HOH . E 5 HOH A 81 667 516 HOH HOH . E 5 HOH A 82 668 517 HOH HOH . E 5 HOH A 83 669 518 HOH HOH . E 5 HOH A 84 670 519 HOH HOH . E 5 HOH A 85 671 520 HOH HOH . E 5 HOH A 86 672 521 HOH HOH . E 5 HOH A 87 673 522 HOH HOH . E 5 HOH A 88 674 523 HOH HOH . E 5 HOH A 89 675 525 HOH HOH . E 5 HOH A 90 676 526 HOH HOH . E 5 HOH A 91 677 527 HOH HOH . E 5 HOH A 92 678 529 HOH HOH . E 5 HOH A 93 679 531 HOH HOH . E 5 HOH A 94 680 533 HOH HOH . E 5 HOH A 95 681 534 HOH HOH . E 5 HOH A 96 682 535 HOH HOH . E 5 HOH A 97 683 537 HOH HOH . E 5 HOH A 98 684 538 HOH HOH . E 5 HOH A 99 685 539 HOH HOH . E 5 HOH A 100 686 540 HOH HOH . E 5 HOH A 101 687 541 HOH HOH . E 5 HOH A 102 688 544 HOH HOH . E 5 HOH A 103 689 546 HOH HOH . E 5 HOH A 104 690 547 HOH HOH . E 5 HOH A 105 691 548 HOH HOH . E 5 HOH A 106 692 549 HOH HOH . E 5 HOH A 107 693 550 HOH HOH . E 5 HOH A 108 694 552 HOH HOH . E 5 HOH A 109 695 553 HOH HOH . E 5 HOH A 110 696 554 HOH HOH . E 5 HOH A 111 697 555 HOH HOH . E 5 HOH A 112 698 556 HOH HOH . E 5 HOH A 113 699 557 HOH HOH . E 5 HOH A 114 700 558 HOH HOH . E 5 HOH A 115 701 559 HOH HOH . E 5 HOH A 116 702 560 HOH HOH . E 5 HOH A 117 703 562 HOH HOH . E 5 HOH A 118 704 565 HOH HOH . E 5 HOH A 119 705 566 HOH HOH . E 5 HOH A 120 706 567 HOH HOH . E 5 HOH A 121 707 570 HOH HOH . E 5 HOH A 122 708 571 HOH HOH . E 5 HOH A 123 709 572 HOH HOH . E 5 HOH A 124 710 573 HOH HOH . E 5 HOH A 125 711 574 HOH HOH . E 5 HOH A 126 712 576 HOH HOH . E 5 HOH A 127 713 577 HOH HOH . E 5 HOH A 128 714 578 HOH HOH . E 5 HOH A 129 715 579 HOH HOH . E 5 HOH A 130 716 580 HOH HOH . E 5 HOH A 131 717 581 HOH HOH . E 5 HOH A 132 718 582 HOH HOH . E 5 HOH A 133 719 583 HOH HOH . E 5 HOH A 134 720 584 HOH HOH . E 5 HOH A 135 721 585 HOH HOH . E 5 HOH A 136 722 587 HOH HOH . E 5 HOH A 137 723 588 HOH HOH . E 5 HOH A 138 724 590 HOH HOH . E 5 HOH A 139 725 591 HOH HOH . E 5 HOH A 140 726 592 HOH HOH . E 5 HOH A 141 727 594 HOH HOH . E 5 HOH A 142 728 601 HOH HOH . E 5 HOH A 143 729 602 HOH HOH . E 5 HOH A 144 730 603 HOH HOH . E 5 HOH A 145 731 604 HOH HOH . E 5 HOH A 146 732 605 HOH HOH . E 5 HOH A 147 733 607 HOH HOH . E 5 HOH A 148 734 608 HOH HOH . E 5 HOH A 149 735 610 HOH HOH . E 5 HOH A 150 736 611 HOH HOH . E 5 HOH A 151 737 612 HOH HOH . E 5 HOH A 152 738 615 HOH HOH . E 5 HOH A 153 739 616 HOH HOH . E 5 HOH A 154 740 617 HOH HOH . E 5 HOH A 155 741 618 HOH HOH . E 5 HOH A 156 742 619 HOH HOH . E 5 HOH A 157 743 620 HOH HOH . E 5 HOH A 158 744 624 HOH HOH . E 5 HOH A 159 745 625 HOH HOH . E 5 HOH A 160 746 627 HOH HOH . E 5 HOH A 161 747 631 HOH HOH . E 5 HOH A 162 748 632 HOH HOH . E 5 HOH A 163 749 633 HOH HOH . E 5 HOH A 164 750 634 HOH HOH . E 5 HOH A 165 751 635 HOH HOH . E 5 HOH A 166 752 636 HOH HOH . E 5 HOH A 167 753 637 HOH HOH . E 5 HOH A 168 754 640 HOH HOH . E 5 HOH A 169 755 641 HOH HOH . E 5 HOH A 170 756 642 HOH HOH . E 5 HOH A 171 757 645 HOH HOH . E 5 HOH A 172 758 646 HOH HOH . E 5 HOH A 173 759 648 HOH HOH . E 5 HOH A 174 760 650 HOH HOH . E 5 HOH A 175 761 651 HOH HOH . E 5 HOH A 176 762 652 HOH HOH . E 5 HOH A 177 763 653 HOH HOH . E 5 HOH A 178 764 654 HOH HOH . E 5 HOH A 179 765 657 HOH HOH . E 5 HOH A 180 766 659 HOH HOH . E 5 HOH A 181 767 663 HOH HOH . E 5 HOH A 182 768 664 HOH HOH . E 5 HOH A 183 769 665 HOH HOH . E 5 HOH A 184 770 668 HOH HOH . E 5 HOH A 185 771 669 HOH HOH . E 5 HOH A 186 772 672 HOH HOH . E 5 HOH A 187 773 673 HOH HOH . E 5 HOH A 188 774 674 HOH HOH . E 5 HOH A 189 775 675 HOH HOH . E 5 HOH A 190 776 676 HOH HOH . E 5 HOH A 191 777 679 HOH HOH . E 5 HOH A 192 778 680 HOH HOH . F 5 HOH D 1 404 404 HOH HOH . F 5 HOH D 2 406 406 HOH HOH . F 5 HOH D 3 413 413 HOH HOH . F 5 HOH D 4 415 415 HOH HOH . F 5 HOH D 5 419 419 HOH HOH . F 5 HOH D 6 426 426 HOH HOH . F 5 HOH D 7 427 427 HOH HOH . F 5 HOH D 8 430 430 HOH HOH . F 5 HOH D 9 437 437 HOH HOH . F 5 HOH D 10 445 445 HOH HOH . F 5 HOH D 11 448 448 HOH HOH . F 5 HOH D 12 450 450 HOH HOH . F 5 HOH D 13 452 452 HOH HOH . F 5 HOH D 14 459 459 HOH HOH . F 5 HOH D 15 462 462 HOH HOH . F 5 HOH D 16 464 464 HOH HOH . F 5 HOH D 17 466 466 HOH HOH . F 5 HOH D 18 468 468 HOH HOH . F 5 HOH D 19 473 473 HOH HOH . F 5 HOH D 20 474 474 HOH HOH . F 5 HOH D 21 475 475 HOH HOH . F 5 HOH D 22 476 476 HOH HOH . F 5 HOH D 23 477 477 HOH HOH . F 5 HOH D 24 478 478 HOH HOH . F 5 HOH D 25 486 486 HOH HOH . F 5 HOH D 26 490 490 HOH HOH . F 5 HOH D 27 496 496 HOH HOH . F 5 HOH D 28 499 499 HOH HOH . F 5 HOH D 29 502 502 HOH HOH . F 5 HOH D 30 503 503 HOH HOH . F 5 HOH D 31 506 506 HOH HOH . F 5 HOH D 32 508 508 HOH HOH . F 5 HOH D 33 515 515 HOH HOH . F 5 HOH D 34 524 524 HOH HOH . F 5 HOH D 35 528 528 HOH HOH . F 5 HOH D 36 530 530 HOH HOH . F 5 HOH D 37 532 532 HOH HOH . F 5 HOH D 38 536 536 HOH HOH . F 5 HOH D 39 542 542 HOH HOH . F 5 HOH D 40 543 543 HOH HOH . F 5 HOH D 41 545 545 HOH HOH . F 5 HOH D 42 551 551 HOH HOH . F 5 HOH D 43 561 561 HOH HOH . F 5 HOH D 44 563 563 HOH HOH . F 5 HOH D 45 564 564 HOH HOH . F 5 HOH D 46 568 568 HOH HOH . F 5 HOH D 47 569 569 HOH HOH . F 5 HOH D 48 575 575 HOH HOH . F 5 HOH D 49 586 586 HOH HOH . F 5 HOH D 50 589 589 HOH HOH . F 5 HOH D 51 593 593 HOH HOH . F 5 HOH D 52 595 595 HOH HOH . F 5 HOH D 53 596 596 HOH HOH . F 5 HOH D 54 597 597 HOH HOH . F 5 HOH D 55 598 598 HOH HOH . F 5 HOH D 56 599 599 HOH HOH . F 5 HOH D 57 600 600 HOH HOH . F 5 HOH D 58 606 606 HOH HOH . F 5 HOH D 59 609 609 HOH HOH . F 5 HOH D 60 613 613 HOH HOH . F 5 HOH D 61 614 614 HOH HOH . F 5 HOH D 62 621 621 HOH HOH . F 5 HOH D 63 622 622 HOH HOH . F 5 HOH D 64 623 623 HOH HOH . F 5 HOH D 65 626 626 HOH HOH . F 5 HOH D 66 628 628 HOH HOH . F 5 HOH D 67 629 629 HOH HOH . F 5 HOH D 68 630 630 HOH HOH . F 5 HOH D 69 638 638 HOH HOH . F 5 HOH D 70 639 639 HOH HOH . F 5 HOH D 71 643 643 HOH HOH . F 5 HOH D 72 644 644 HOH HOH . F 5 HOH D 73 647 647 HOH HOH . F 5 HOH D 74 649 649 HOH HOH . F 5 HOH D 75 655 655 HOH HOH . F 5 HOH D 76 656 656 HOH HOH . F 5 HOH D 77 658 658 HOH HOH . F 5 HOH D 78 660 660 HOH HOH . F 5 HOH D 79 661 661 HOH HOH . F 5 HOH D 80 662 662 HOH HOH . F 5 HOH D 81 666 666 HOH HOH . F 5 HOH D 82 667 667 HOH HOH . F 5 HOH D 83 670 670 HOH HOH . F 5 HOH D 84 671 671 HOH HOH . F 5 HOH D 85 677 677 HOH HOH . F 5 HOH D 86 678 678 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 4 0.017 -0.011 118.189 0.33 28.31 ? P PO4 586 A 1 HETATM 2 O O1 PO4 . . . D 4 -0.017 -0.002 119.683 0.33 29 ? O1 PO4 586 A 1 HETATM 3 O O2 PO4 . . . D 4 0.659 -1.142 117.475 1 99.05 ? O2 PO4 586 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 3 #