data_1WU5 # _model_server_result.job_id -0tx0Si3TNpiwTsDXtGdVg _model_server_result.datetime_utc '2025-07-13 14:37:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1wu5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1400}' # _entry.id 1WU5 # _exptl.entry_id 1WU5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1WU5 _cell.length_a 52.3 _cell.length_b 85.422 _cell.length_c 87.44 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WU5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 27 A GLU 27 1_555 C NI NI . A NI 1400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? metalc ? metalc2 A OE2 GLU 27 A GLU 27 1_555 C NI NI . A NI 1400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc3 A OE1 GLU 30 A GLU 30 1_555 C NI NI . A NI 1400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? metalc ? metalc4 A OD1 ASP 253 A ASP 253 2_665 C NI NI . A NI 1400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? metalc ? metalc5 A OD2 ASP 253 A ASP 253 2_665 C NI NI . A NI 1400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc6 A NE2 HIS 259 A HIS 259 2_665 C NI NI . A NI 1400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1WU5 _atom_sites.fract_transf_matrix[1][1] 0.01912 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011707 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011436 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XYP A 1 501 501 XYP XYS . C 3 NI A 1 1400 1400 NI NI . D 4 GOL A 1 1401 1401 GOL GOL . E 5 HOH A 1 1402 1 HOH HOH . E 5 HOH A 2 1403 2 HOH HOH . E 5 HOH A 3 1404 3 HOH HOH . E 5 HOH A 4 1405 4 HOH HOH . E 5 HOH A 5 1406 5 HOH HOH . E 5 HOH A 6 1407 6 HOH HOH . E 5 HOH A 7 1408 7 HOH HOH . E 5 HOH A 8 1409 8 HOH HOH . E 5 HOH A 9 1410 9 HOH HOH . E 5 HOH A 10 1411 10 HOH HOH . E 5 HOH A 11 1412 11 HOH HOH . E 5 HOH A 12 1413 12 HOH HOH . E 5 HOH A 13 1414 13 HOH HOH . E 5 HOH A 14 1415 14 HOH HOH . E 5 HOH A 15 1416 15 HOH HOH . E 5 HOH A 16 1417 16 HOH HOH . E 5 HOH A 17 1418 17 HOH HOH . E 5 HOH A 18 1419 18 HOH HOH . E 5 HOH A 19 1420 19 HOH HOH . E 5 HOH A 20 1421 20 HOH HOH . E 5 HOH A 21 1422 21 HOH HOH . E 5 HOH A 22 1423 22 HOH HOH . E 5 HOH A 23 1424 23 HOH HOH . E 5 HOH A 24 1425 24 HOH HOH . E 5 HOH A 25 1426 25 HOH HOH . E 5 HOH A 26 1427 26 HOH HOH . E 5 HOH A 27 1428 27 HOH HOH . E 5 HOH A 28 1429 28 HOH HOH . E 5 HOH A 29 1430 29 HOH HOH . E 5 HOH A 30 1431 30 HOH HOH . E 5 HOH A 31 1432 31 HOH HOH . E 5 HOH A 32 1433 32 HOH HOH . E 5 HOH A 33 1434 33 HOH HOH . E 5 HOH A 34 1435 34 HOH HOH . E 5 HOH A 35 1436 35 HOH HOH . E 5 HOH A 36 1437 36 HOH HOH . E 5 HOH A 37 1438 37 HOH HOH . E 5 HOH A 38 1439 38 HOH HOH . E 5 HOH A 39 1440 39 HOH HOH . E 5 HOH A 40 1441 40 HOH HOH . E 5 HOH A 41 1442 41 HOH HOH . E 5 HOH A 42 1443 42 HOH HOH . E 5 HOH A 43 1444 43 HOH HOH . E 5 HOH A 44 1445 44 HOH HOH . E 5 HOH A 45 1446 45 HOH HOH . E 5 HOH A 46 1447 46 HOH HOH . E 5 HOH A 47 1448 47 HOH HOH . E 5 HOH A 48 1449 48 HOH HOH . E 5 HOH A 49 1450 49 HOH HOH . E 5 HOH A 50 1451 50 HOH HOH . E 5 HOH A 51 1452 51 HOH HOH . E 5 HOH A 52 1453 52 HOH HOH . E 5 HOH A 53 1454 53 HOH HOH . E 5 HOH A 54 1455 54 HOH HOH . E 5 HOH A 55 1456 55 HOH HOH . E 5 HOH A 56 1457 56 HOH HOH . E 5 HOH A 57 1458 57 HOH HOH . E 5 HOH A 58 1459 58 HOH HOH . E 5 HOH A 59 1460 59 HOH HOH . E 5 HOH A 60 1461 60 HOH HOH . E 5 HOH A 61 1462 61 HOH HOH . E 5 HOH A 62 1463 62 HOH HOH . E 5 HOH A 63 1464 63 HOH HOH . E 5 HOH A 64 1465 64 HOH HOH . E 5 HOH A 65 1466 65 HOH HOH . E 5 HOH A 66 1467 66 HOH HOH . E 5 HOH A 67 1468 67 HOH HOH . E 5 HOH A 68 1469 68 HOH HOH . E 5 HOH A 69 1470 69 HOH HOH . E 5 HOH A 70 1471 70 HOH HOH . E 5 HOH A 71 1472 71 HOH HOH . E 5 HOH A 72 1473 72 HOH HOH . E 5 HOH A 73 1474 73 HOH HOH . E 5 HOH A 74 1475 74 HOH HOH . E 5 HOH A 75 1476 75 HOH HOH . E 5 HOH A 76 1477 76 HOH HOH . E 5 HOH A 77 1478 77 HOH HOH . E 5 HOH A 78 1479 78 HOH HOH . E 5 HOH A 79 1480 79 HOH HOH . E 5 HOH A 80 1481 80 HOH HOH . E 5 HOH A 81 1482 81 HOH HOH . E 5 HOH A 82 1483 82 HOH HOH . E 5 HOH A 83 1484 83 HOH HOH . E 5 HOH A 84 1485 84 HOH HOH . E 5 HOH A 85 1486 85 HOH HOH . E 5 HOH A 86 1487 86 HOH HOH . E 5 HOH A 87 1488 87 HOH HOH . E 5 HOH A 88 1489 88 HOH HOH . E 5 HOH A 89 1490 89 HOH HOH . E 5 HOH A 90 1491 90 HOH HOH . E 5 HOH A 91 1492 91 HOH HOH . E 5 HOH A 92 1493 92 HOH HOH . E 5 HOH A 93 1494 93 HOH HOH . E 5 HOH A 94 1495 94 HOH HOH . E 5 HOH A 95 1496 95 HOH HOH . E 5 HOH A 96 1497 96 HOH HOH . E 5 HOH A 97 1498 97 HOH HOH . E 5 HOH A 98 1499 98 HOH HOH . E 5 HOH A 99 1500 99 HOH HOH . E 5 HOH A 100 1501 100 HOH HOH . E 5 HOH A 101 1502 101 HOH HOH . E 5 HOH A 102 1503 102 HOH HOH . E 5 HOH A 103 1504 103 HOH HOH . E 5 HOH A 104 1505 104 HOH HOH . E 5 HOH A 105 1506 105 HOH HOH . E 5 HOH A 106 1507 106 HOH HOH . E 5 HOH A 107 1508 107 HOH HOH . E 5 HOH A 108 1509 108 HOH HOH . E 5 HOH A 109 1510 109 HOH HOH . E 5 HOH A 110 1511 110 HOH HOH . E 5 HOH A 111 1512 111 HOH HOH . E 5 HOH A 112 1513 112 HOH HOH . E 5 HOH A 113 1514 113 HOH HOH . E 5 HOH A 114 1515 114 HOH HOH . E 5 HOH A 115 1516 115 HOH HOH . E 5 HOH A 116 1517 116 HOH HOH . E 5 HOH A 117 1518 117 HOH HOH . E 5 HOH A 118 1519 118 HOH HOH . E 5 HOH A 119 1520 119 HOH HOH . E 5 HOH A 120 1521 120 HOH HOH . E 5 HOH A 121 1522 121 HOH HOH . E 5 HOH A 122 1523 122 HOH HOH . E 5 HOH A 123 1524 123 HOH HOH . E 5 HOH A 124 1525 124 HOH HOH . E 5 HOH A 125 1526 125 HOH HOH . E 5 HOH A 126 1527 126 HOH HOH . E 5 HOH A 127 1528 127 HOH HOH . E 5 HOH A 128 1529 128 HOH HOH . E 5 HOH A 129 1530 129 HOH HOH . E 5 HOH A 130 1531 130 HOH HOH . E 5 HOH A 131 1532 131 HOH HOH . E 5 HOH A 132 1533 132 HOH HOH . E 5 HOH A 133 1534 133 HOH HOH . E 5 HOH A 134 1535 134 HOH HOH . E 5 HOH A 135 1536 135 HOH HOH . E 5 HOH A 136 1537 136 HOH HOH . E 5 HOH A 137 1538 137 HOH HOH . E 5 HOH A 138 1539 138 HOH HOH . E 5 HOH A 139 1540 139 HOH HOH . E 5 HOH A 140 1541 140 HOH HOH . E 5 HOH A 141 1542 141 HOH HOH . E 5 HOH A 142 1543 142 HOH HOH . E 5 HOH A 143 1544 143 HOH HOH . E 5 HOH A 144 1545 144 HOH HOH . E 5 HOH A 145 1546 145 HOH HOH . E 5 HOH A 146 1547 146 HOH HOH . E 5 HOH A 147 1548 147 HOH HOH . E 5 HOH A 148 1549 148 HOH HOH . E 5 HOH A 149 1550 149 HOH HOH . E 5 HOH A 150 1551 150 HOH HOH . E 5 HOH A 151 1552 151 HOH HOH . E 5 HOH A 152 1553 152 HOH HOH . E 5 HOH A 153 1554 153 HOH HOH . E 5 HOH A 154 1555 154 HOH HOH . E 5 HOH A 155 1556 155 HOH HOH . E 5 HOH A 156 1557 156 HOH HOH . E 5 HOH A 157 1558 157 HOH HOH . E 5 HOH A 158 1559 158 HOH HOH . E 5 HOH A 159 1560 159 HOH HOH . E 5 HOH A 160 1561 160 HOH HOH . E 5 HOH A 161 1562 161 HOH HOH . E 5 HOH A 162 1563 162 HOH HOH . E 5 HOH A 163 1564 163 HOH HOH . E 5 HOH A 164 1565 164 HOH HOH . E 5 HOH A 165 1566 165 HOH HOH . E 5 HOH A 166 1567 166 HOH HOH . E 5 HOH A 167 1568 167 HOH HOH . E 5 HOH A 168 1569 168 HOH HOH . E 5 HOH A 169 1570 169 HOH HOH . E 5 HOH A 170 1571 170 HOH HOH . E 5 HOH A 171 1572 172 HOH HOH . E 5 HOH A 172 1573 173 HOH HOH . E 5 HOH A 173 1574 174 HOH HOH . E 5 HOH A 174 1575 175 HOH HOH . E 5 HOH A 175 1576 176 HOH HOH . E 5 HOH A 176 1577 177 HOH HOH . E 5 HOH A 177 1578 178 HOH HOH . E 5 HOH A 178 1579 179 HOH HOH . E 5 HOH A 179 1580 180 HOH HOH . E 5 HOH A 180 1581 181 HOH HOH . E 5 HOH A 181 1582 182 HOH HOH . E 5 HOH A 182 1583 183 HOH HOH . E 5 HOH A 183 1584 184 HOH HOH . E 5 HOH A 184 1585 185 HOH HOH . E 5 HOH A 185 1586 186 HOH HOH . E 5 HOH A 186 1587 187 HOH HOH . E 5 HOH A 187 1588 188 HOH HOH . E 5 HOH A 188 1589 189 HOH HOH . E 5 HOH A 189 1590 190 HOH HOH . E 5 HOH A 190 1591 191 HOH HOH . E 5 HOH A 191 1592 192 HOH HOH . E 5 HOH A 192 1593 193 HOH HOH . E 5 HOH A 193 1594 194 HOH HOH . E 5 HOH A 194 1595 195 HOH HOH . E 5 HOH A 195 1596 196 HOH HOH . E 5 HOH A 196 1597 197 HOH HOH . E 5 HOH A 197 1598 198 HOH HOH . E 5 HOH A 198 1599 199 HOH HOH . E 5 HOH A 199 1600 200 HOH HOH . E 5 HOH A 200 1601 201 HOH HOH . E 5 HOH A 201 1602 202 HOH HOH . E 5 HOH A 202 1603 203 HOH HOH . E 5 HOH A 203 1604 204 HOH HOH . E 5 HOH A 204 1605 205 HOH HOH . E 5 HOH A 205 1606 206 HOH HOH . E 5 HOH A 206 1607 207 HOH HOH . E 5 HOH A 207 1608 208 HOH HOH . E 5 HOH A 208 1609 209 HOH HOH . E 5 HOH A 209 1610 210 HOH HOH . E 5 HOH A 210 1611 211 HOH HOH . E 5 HOH A 211 1612 212 HOH HOH . E 5 HOH A 212 1613 213 HOH HOH . E 5 HOH A 213 1614 214 HOH HOH . E 5 HOH A 214 1615 215 HOH HOH . E 5 HOH A 215 1616 216 HOH HOH . E 5 HOH A 216 1617 217 HOH HOH . E 5 HOH A 217 1618 218 HOH HOH . E 5 HOH A 218 1619 219 HOH HOH . E 5 HOH A 219 1620 220 HOH HOH . E 5 HOH A 220 1621 221 HOH HOH . E 5 HOH A 221 1622 222 HOH HOH . E 5 HOH A 222 1623 223 HOH HOH . E 5 HOH A 223 1624 224 HOH HOH . E 5 HOH A 224 1625 225 HOH HOH . E 5 HOH A 225 1626 226 HOH HOH . E 5 HOH A 226 1627 227 HOH HOH . E 5 HOH A 227 1628 228 HOH HOH . E 5 HOH A 228 1629 229 HOH HOH . E 5 HOH A 229 1630 230 HOH HOH . E 5 HOH A 230 1631 231 HOH HOH . E 5 HOH A 231 1632 232 HOH HOH . E 5 HOH A 232 1633 233 HOH HOH . E 5 HOH A 233 1634 234 HOH HOH . E 5 HOH A 234 1635 236 HOH HOH . E 5 HOH A 235 1636 237 HOH HOH . E 5 HOH A 236 1637 239 HOH HOH . E 5 HOH A 237 1638 241 HOH HOH . E 5 HOH A 238 1639 242 HOH HOH . E 5 HOH A 239 1640 243 HOH HOH . E 5 HOH A 240 1641 244 HOH HOH . E 5 HOH A 241 1642 245 HOH HOH . E 5 HOH A 242 1643 246 HOH HOH . E 5 HOH A 243 1644 248 HOH HOH . E 5 HOH A 244 1645 249 HOH HOH . E 5 HOH A 245 1646 250 HOH HOH . E 5 HOH A 246 1647 251 HOH HOH . E 5 HOH A 247 1648 252 HOH HOH . E 5 HOH A 248 1649 253 HOH HOH . E 5 HOH A 249 1650 254 HOH HOH . E 5 HOH A 250 1651 255 HOH HOH . E 5 HOH A 251 1652 256 HOH HOH . E 5 HOH A 252 1653 257 HOH HOH . E 5 HOH A 253 1654 258 HOH HOH . E 5 HOH A 254 1655 259 HOH HOH . E 5 HOH A 255 1656 260 HOH HOH . E 5 HOH A 256 1657 261 HOH HOH . E 5 HOH A 257 1658 262 HOH HOH . E 5 HOH A 258 1659 263 HOH HOH . E 5 HOH A 259 1660 264 HOH HOH . E 5 HOH A 260 1661 265 HOH HOH . E 5 HOH A 261 1662 266 HOH HOH . E 5 HOH A 262 1663 267 HOH HOH . E 5 HOH A 263 1664 269 HOH HOH . E 5 HOH A 264 1665 270 HOH HOH . E 5 HOH A 265 1666 271 HOH HOH . E 5 HOH A 266 1667 273 HOH HOH . E 5 HOH A 267 1668 274 HOH HOH . E 5 HOH A 268 1669 275 HOH HOH . E 5 HOH A 269 1670 276 HOH HOH . E 5 HOH A 270 1671 277 HOH HOH . E 5 HOH A 271 1672 280 HOH HOH . E 5 HOH A 272 1673 281 HOH HOH . E 5 HOH A 273 1674 282 HOH HOH . E 5 HOH A 274 1675 283 HOH HOH . E 5 HOH A 275 1676 284 HOH HOH . E 5 HOH A 276 1677 285 HOH HOH . E 5 HOH A 277 1678 286 HOH HOH . E 5 HOH A 278 1679 287 HOH HOH . E 5 HOH A 279 1680 290 HOH HOH . E 5 HOH A 280 1681 291 HOH HOH . E 5 HOH A 281 1682 292 HOH HOH . E 5 HOH A 282 1683 293 HOH HOH . E 5 HOH A 283 1684 294 HOH HOH . E 5 HOH A 284 1685 295 HOH HOH . E 5 HOH A 285 1686 297 HOH HOH . E 5 HOH A 286 1687 298 HOH HOH . E 5 HOH A 287 1688 299 HOH HOH . E 5 HOH A 288 1689 300 HOH HOH . E 5 HOH A 289 1690 301 HOH HOH . E 5 HOH A 290 1691 302 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 42.2 _atom_site.Cartn_y 40.184 _atom_site.Cartn_z 43.174 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 17.54 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 1400 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #