data_1WUB # _model_server_result.job_id YtTeHWkGxefxGK7bbjmulg _model_server_result.datetime_utc '2024-11-05 11:44:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1wub # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 1WUB # _exptl.entry_id 1WUB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 722.911 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2E,6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31-OCTAMETHYLDOTRIACONTA-2,6,10,14,18,22,26,30-OCTAENYL TRIHYDROGEN DIPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1WUB _cell.length_a 32.561 _cell.length_b 96.948 _cell.length_c 109.14 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WUB _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C40 H68 O7 P2' _chem_comp.formula_weight 722.911 _chem_comp.id OTP _chem_comp.mon_nstd_flag . _chem_comp.name '(2E,6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31-OCTAMETHYLDOTRIACONTA-2,6,10,14,18,22,26,30-OCTAENYL TRIHYDROGEN DIPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'OCTAPRENYL PYROPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O7 P2 OTP sing 224 n n O7 HO7 OTP sing 225 n n P2 O5 OTP doub 226 n n P2 O6 OTP sing 227 n n P2 O4 OTP sing 228 n n O6 HO6 OTP sing 229 n n O4 P1 OTP sing 230 n n P1 O2 OTP doub 231 n n P1 O3 OTP sing 232 n n P1 O1 OTP sing 233 n n O3 HO3 OTP sing 234 n n O1 C40 OTP sing 235 n n C40 C39 OTP sing 236 n n C40 H401 OTP sing 237 n n C40 H402 OTP sing 238 n n C39 C37 OTP doub 239 e n C39 H39 OTP sing 240 n n C37 C38 OTP sing 241 n n C37 C36 OTP sing 242 n n C38 H381 OTP sing 243 n n C38 H382 OTP sing 244 n n C38 H383 OTP sing 245 n n C36 C35 OTP sing 246 n n C36 H361 OTP sing 247 n n C36 H362 OTP sing 248 n n C35 C34 OTP sing 249 n n C35 H351 OTP sing 250 n n C35 H352 OTP sing 251 n n C34 C32 OTP doub 252 e n C34 H34 OTP sing 253 n n C32 C33 OTP sing 254 n n C32 C31 OTP sing 255 n n C33 H331 OTP sing 256 n n C33 H332 OTP sing 257 n n C33 H333 OTP sing 258 n n C31 C30 OTP sing 259 n n C31 H311 OTP sing 260 n n C31 H312 OTP sing 261 n n C30 C29 OTP sing 262 n n C30 H301 OTP sing 263 n n C30 H302 OTP sing 264 n n C29 C27 OTP doub 265 e n C29 H29 OTP sing 266 n n C27 C28 OTP sing 267 n n C27 C26 OTP sing 268 n n C28 H281 OTP sing 269 n n C28 H282 OTP sing 270 n n C28 H283 OTP sing 271 n n C26 C25 OTP sing 272 n n C26 H261 OTP sing 273 n n C26 H262 OTP sing 274 n n C25 C24 OTP sing 275 n n C25 H251 OTP sing 276 n n C25 H252 OTP sing 277 n n C24 C22 OTP doub 278 e n C24 H24 OTP sing 279 n n C22 C23 OTP sing 280 n n C22 C21 OTP sing 281 n n C23 H231 OTP sing 282 n n C23 H232 OTP sing 283 n n C23 H233 OTP sing 284 n n C21 C20 OTP sing 285 n n C21 H211 OTP sing 286 n n C21 H212 OTP sing 287 n n C20 C19 OTP sing 288 n n C20 H201 OTP sing 289 n n C20 H202 OTP sing 290 n n C19 C17 OTP doub 291 e n C19 H19 OTP sing 292 n n C17 C18 OTP sing 293 n n C17 C16 OTP sing 294 n n C18 H181 OTP sing 295 n n C18 H182 OTP sing 296 n n C18 H183 OTP sing 297 n n C16 C15 OTP sing 298 n n C16 H161 OTP sing 299 n n C16 H162 OTP sing 300 n n C15 C14 OTP sing 301 n n C15 H151 OTP sing 302 n n C15 H152 OTP sing 303 n n C14 C12 OTP doub 304 e n C14 H14 OTP sing 305 n n C12 C13 OTP sing 306 n n C12 C11 OTP sing 307 n n C13 H131 OTP sing 308 n n C13 H132 OTP sing 309 n n C13 H133 OTP sing 310 n n C11 C10 OTP sing 311 n n C11 H111 OTP sing 312 n n C11 H112 OTP sing 313 n n C10 C9 OTP sing 314 n n C10 H101 OTP sing 315 n n C10 H102 OTP sing 316 n n C9 C7 OTP doub 317 e n C9 H9 OTP sing 318 n n C7 C8 OTP sing 319 n n C7 C6 OTP sing 320 n n C8 H81 OTP sing 321 n n C8 H82 OTP sing 322 n n C8 H83 OTP sing 323 n n C6 C5 OTP sing 324 n n C6 H61 OTP sing 325 n n C6 H62 OTP sing 326 n n C5 C4 OTP sing 327 n n C5 H51 OTP sing 328 n n C5 H52 OTP sing 329 n n C4 C2 OTP doub 330 n n C4 H4 OTP sing 331 n n C2 C3 OTP sing 332 n n C2 C1 OTP sing 333 n n C3 H31 OTP sing 334 n n C3 H32 OTP sing 335 n n C3 H33 OTP sing 336 n n C1 H11 OTP sing 337 n n C1 H12 OTP sing 338 n n C1 H13 OTP sing 339 n n # _atom_sites.entry_id 1WUB _atom_sites.fract_transf_matrix[1][1] 0.030712 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010315 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009163 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OTP A 1 1001 1 OTP DRG . C 3 HOH A 1 1002 1 HOH HOH . C 3 HOH A 2 1003 2 HOH HOH . C 3 HOH A 3 1004 3 HOH HOH . C 3 HOH A 4 1005 4 HOH HOH . C 3 HOH A 5 1006 5 HOH HOH . C 3 HOH A 6 1007 6 HOH HOH . C 3 HOH A 7 1008 7 HOH HOH . C 3 HOH A 8 1009 8 HOH HOH . C 3 HOH A 9 1010 9 HOH HOH . C 3 HOH A 10 1011 10 HOH HOH . C 3 HOH A 11 1012 11 HOH HOH . C 3 HOH A 12 1013 12 HOH HOH . C 3 HOH A 13 1014 13 HOH HOH . C 3 HOH A 14 1015 14 HOH HOH . C 3 HOH A 15 1016 15 HOH HOH . C 3 HOH A 16 1017 16 HOH HOH . C 3 HOH A 17 1018 17 HOH HOH . C 3 HOH A 18 1019 18 HOH HOH . C 3 HOH A 19 1020 19 HOH HOH . C 3 HOH A 20 1021 20 HOH HOH . C 3 HOH A 21 1022 21 HOH HOH . C 3 HOH A 22 1023 22 HOH HOH . C 3 HOH A 23 1024 23 HOH HOH . C 3 HOH A 24 1025 24 HOH HOH . C 3 HOH A 25 1026 25 HOH HOH . C 3 HOH A 26 1027 26 HOH HOH . C 3 HOH A 27 1028 27 HOH HOH . C 3 HOH A 28 1029 28 HOH HOH . C 3 HOH A 29 1030 29 HOH HOH . C 3 HOH A 30 1031 30 HOH HOH . C 3 HOH A 31 1032 31 HOH HOH . C 3 HOH A 32 1033 32 HOH HOH . C 3 HOH A 33 1034 33 HOH HOH . C 3 HOH A 34 1035 34 HOH HOH . C 3 HOH A 35 1036 35 HOH HOH . C 3 HOH A 36 1037 36 HOH HOH . C 3 HOH A 37 1038 37 HOH HOH . C 3 HOH A 38 1039 38 HOH HOH . C 3 HOH A 39 1040 39 HOH HOH . C 3 HOH A 40 1041 40 HOH HOH . C 3 HOH A 41 1042 41 HOH HOH . C 3 HOH A 42 1043 42 HOH HOH . C 3 HOH A 43 1044 43 HOH HOH . C 3 HOH A 44 1045 44 HOH HOH . C 3 HOH A 45 1046 45 HOH HOH . C 3 HOH A 46 1047 46 HOH HOH . C 3 HOH A 47 1048 47 HOH HOH . C 3 HOH A 48 1049 48 HOH HOH . C 3 HOH A 49 1050 49 HOH HOH . C 3 HOH A 50 1051 50 HOH HOH . C 3 HOH A 51 1052 51 HOH HOH . C 3 HOH A 52 1053 52 HOH HOH . C 3 HOH A 53 1054 53 HOH HOH . C 3 HOH A 54 1055 54 HOH HOH . C 3 HOH A 55 1056 55 HOH HOH . C 3 HOH A 56 1057 56 HOH HOH . C 3 HOH A 57 1058 57 HOH HOH . C 3 HOH A 58 1059 58 HOH HOH . C 3 HOH A 59 1060 59 HOH HOH . C 3 HOH A 60 1061 60 HOH HOH . C 3 HOH A 61 1062 61 HOH HOH . C 3 HOH A 62 1063 62 HOH HOH . C 3 HOH A 63 1064 63 HOH HOH . C 3 HOH A 64 1065 64 HOH HOH . C 3 HOH A 65 1066 65 HOH HOH . C 3 HOH A 66 1067 66 HOH HOH . C 3 HOH A 67 1068 67 HOH HOH . C 3 HOH A 68 1069 68 HOH HOH . C 3 HOH A 69 1070 69 HOH HOH . C 3 HOH A 70 1071 70 HOH HOH . C 3 HOH A 71 1072 71 HOH HOH . C 3 HOH A 72 1073 72 HOH HOH . C 3 HOH A 73 1074 73 HOH HOH . C 3 HOH A 74 1075 74 HOH HOH . C 3 HOH A 75 1076 75 HOH HOH . C 3 HOH A 76 1077 76 HOH HOH . C 3 HOH A 77 1078 77 HOH HOH . C 3 HOH A 78 1079 78 HOH HOH . C 3 HOH A 79 1080 79 HOH HOH . C 3 HOH A 80 1081 80 HOH HOH . C 3 HOH A 81 1082 81 HOH HOH . C 3 HOH A 82 1083 82 HOH HOH . C 3 HOH A 83 1084 83 HOH HOH . C 3 HOH A 84 1085 84 HOH HOH . C 3 HOH A 85 1086 85 HOH HOH . C 3 HOH A 86 1087 86 HOH HOH . C 3 HOH A 87 1088 87 HOH HOH . C 3 HOH A 88 1089 88 HOH HOH . C 3 HOH A 89 1090 89 HOH HOH . C 3 HOH A 90 1091 90 HOH HOH . C 3 HOH A 91 1092 91 HOH HOH . C 3 HOH A 92 1093 92 HOH HOH . C 3 HOH A 93 1094 93 HOH HOH . C 3 HOH A 94 1095 94 HOH HOH . C 3 HOH A 95 1096 95 HOH HOH . C 3 HOH A 96 1097 96 HOH HOH . C 3 HOH A 97 1098 97 HOH HOH . C 3 HOH A 98 1099 98 HOH HOH . C 3 HOH A 99 1100 99 HOH HOH . C 3 HOH A 100 1101 100 HOH HOH . C 3 HOH A 101 1102 101 HOH HOH . C 3 HOH A 102 1103 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O7 OTP . . . B 2 -3.331 62.71 48.486 1 53.04 ? O7 OTP 1001 A 1 HETATM 2 P P2 OTP . . . B 2 -3.536 63.978 49.289 1 50.08 ? P2 OTP 1001 A 1 HETATM 3 O O5 OTP . . . B 2 -3.962 65.161 48.46 1 53.57 ? O5 OTP 1001 A 1 HETATM 4 O O6 OTP . . . B 2 -4.344 63.8 50.559 1 52.75 ? O6 OTP 1001 A 1 HETATM 5 O O4 OTP . . . B 2 -2.022 64.359 49.74 1 46.72 ? O4 OTP 1001 A 1 HETATM 6 P P1 OTP . . . B 2 -1.31 63.944 51.147 1 40.96 ? P1 OTP 1001 A 1 HETATM 7 O O2 OTP . . . B 2 -0.318 65.051 51.451 1 39.96 ? O2 OTP 1001 A 1 HETATM 8 O O3 OTP . . . B 2 -2.383 63.686 52.172 1 40.73 ? O3 OTP 1001 A 1 HETATM 9 O O1 OTP . . . B 2 -0.437 62.631 50.798 1 38.54 ? O1 OTP 1001 A 1 HETATM 10 C C40 OTP . . . B 2 0.8 62.689 50.09 1 34.06 ? C40 OTP 1001 A 1 HETATM 11 C C39 OTP . . . B 2 0.772 61.651 48.966 1 27.23 ? C39 OTP 1001 A 1 HETATM 12 C C37 OTP . . . B 2 2.13 61.16 48.477 1 24.6 ? C37 OTP 1001 A 1 HETATM 13 C C38 OTP . . . B 2 3.326 61.495 49.362 1 26.55 ? C38 OTP 1001 A 1 HETATM 14 C C36 OTP . . . B 2 2.036 59.673 48.158 1 24.89 ? C36 OTP 1001 A 1 HETATM 15 C C35 OTP . . . B 2 0.818 59.372 47.285 1 23.82 ? C35 OTP 1001 A 1 HETATM 16 C C34 OTP . . . B 2 1.141 58.008 46.711 1 24.55 ? C34 OTP 1001 A 1 HETATM 17 C C32 OTP . . . B 2 1.58 57.727 45.464 1 24.48 ? C32 OTP 1001 A 1 HETATM 18 C C33 OTP . . . B 2 1.814 58.787 44.405 1 25.55 ? C33 OTP 1001 A 1 HETATM 19 C C31 OTP . . . B 2 1.874 56.247 45.199 1 29.19 ? C31 OTP 1001 A 1 HETATM 20 C C30 OTP . . . B 2 1.796 55.698 43.806 1 28.74 ? C30 OTP 1001 A 1 HETATM 21 C C29 OTP . . . B 2 1.87 54.373 43.477 1 25.6 ? C29 OTP 1001 A 1 HETATM 22 C C27 OTP . . . B 2 1.743 54.058 42.165 1 24.69 ? C27 OTP 1001 A 1 HETATM 23 C C28 OTP . . . B 2 1.577 55.132 41.162 1 25.15 ? C28 OTP 1001 A 1 HETATM 24 C C26 OTP . . . B 2 1.78 52.701 41.464 1 27.13 ? C26 OTP 1001 A 1 HETATM 25 C C25 OTP . . . B 2 2.744 51.699 41.971 1 29.54 ? C25 OTP 1001 A 1 HETATM 26 C C24 OTP . . . B 2 2.749 50.422 41.535 1 23.93 ? C24 OTP 1001 A 1 HETATM 27 C C22 OTP . . . B 2 3.63 49.598 42.131 1 21.12 ? C22 OTP 1001 A 1 HETATM 28 C C23 OTP . . . B 2 4.498 50.114 43.258 1 20.72 ? C23 OTP 1001 A 1 HETATM 29 C C21 OTP . . . B 2 3.721 48.113 41.798 1 19.58 ? C21 OTP 1001 A 1 HETATM 30 C C20 OTP . . . B 2 4.902 47.568 41.031 1 23.86 ? C20 OTP 1001 A 1 HETATM 31 C C19 OTP . . . B 2 4.919 46.227 40.808 1 20.03 ? C19 OTP 1001 A 1 HETATM 32 C C17 OTP . . . B 2 5.903 45.679 40.099 1 18.84 ? C17 OTP 1001 A 1 HETATM 33 C C18 OTP . . . B 2 6.941 46.593 39.525 1 21.34 ? C18 OTP 1001 A 1 HETATM 34 C C16 OTP . . . B 2 5.983 44.189 39.778 1 18.85 ? C16 OTP 1001 A 1 HETATM 35 C C15 OTP . . . B 2 5.196 43.178 40.609 1 18.74 ? C15 OTP 1001 A 1 HETATM 36 C C14 OTP . . . B 2 5.574 41.865 40.44 1 14.33 ? C14 OTP 1001 A 1 HETATM 37 C C12 OTP . . . B 2 5.086 40.807 41.13 1 17.2 ? C12 OTP 1001 A 1 HETATM 38 C C13 OTP . . . B 2 4.007 41.062 42.148 1 18.59 ? C13 OTP 1001 A 1 HETATM 39 C C11 OTP . . . B 2 5.544 39.351 40.958 1 18.53 ? C11 OTP 1001 A 1 HETATM 40 C C10 OTP . . . B 2 6.933 39.143 41.585 1 21.1 ? C10 OTP 1001 A 1 HETATM 41 C C9 OTP . . . B 2 7.606 37.971 41.328 1 21.42 ? C9 OTP 1001 A 1 HETATM 42 C C7 OTP . . . B 2 8.868 37.642 41.689 1 19.93 ? C7 OTP 1001 A 1 HETATM 43 C C8 OTP . . . B 2 9.769 38.55 42.45 1 23.15 ? C8 OTP 1001 A 1 HETATM 44 C C6 OTP . . . B 2 9.535 36.312 41.303 1 21.64 ? C6 OTP 1001 A 1 HETATM 45 C C5 OTP . . . B 2 9.407 35.143 42.22 1 24.62 ? C5 OTP 1001 A 1 HETATM 46 C C4 OTP . . . B 2 10.037 33.963 41.962 1 20.91 ? C4 OTP 1001 A 1 HETATM 47 C C2 OTP . . . B 2 9.836 32.882 42.735 1 22.9 ? C2 OTP 1001 A 1 HETATM 48 C C3 OTP . . . B 2 8.943 32.907 43.947 1 22.8 ? C3 OTP 1001 A 1 HETATM 49 C C1 OTP . . . B 2 10.523 31.611 42.368 1 18.91 ? C1 OTP 1001 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 49 #