data_1WV4 # _model_server_result.job_id f9iRo45ZwHufT11mH1Sqfg _model_server_result.datetime_utc '2025-03-06 10:16:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1wv4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":250}' # _entry.id 1WV4 # _exptl.entry_id 1WV4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1WV4 _cell.length_a 54.42 _cell.length_b 54.42 _cell.length_c 164.42 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WV4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 1WV4 _atom_sites.fract_transf_matrix[1][1] 0.018376 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018376 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006082 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 275 275 PO4 PO4 . D 3 FMN A 1 250 250 FMN FMN . E 2 PO4 B 1 1275 275 PO4 PO4 . F 3 FMN B 1 1250 250 FMN FMN . G 4 HOH A 1 276 1 HOH HOH . G 4 HOH A 2 277 2 HOH HOH . G 4 HOH A 3 278 3 HOH HOH . G 4 HOH A 4 279 4 HOH HOH . G 4 HOH A 5 280 5 HOH HOH . G 4 HOH A 6 281 6 HOH HOH . G 4 HOH A 7 282 7 HOH HOH . G 4 HOH A 8 283 8 HOH HOH . G 4 HOH A 9 284 9 HOH HOH . G 4 HOH A 10 285 10 HOH HOH . G 4 HOH A 11 286 23 HOH HOH . G 4 HOH A 12 287 28 HOH HOH . G 4 HOH A 13 288 29 HOH HOH . G 4 HOH A 14 289 30 HOH HOH . G 4 HOH A 15 290 32 HOH HOH . G 4 HOH A 16 291 37 HOH HOH . G 4 HOH A 17 292 39 HOH HOH . G 4 HOH A 18 293 40 HOH HOH . G 4 HOH A 19 294 41 HOH HOH . G 4 HOH A 20 295 42 HOH HOH . G 4 HOH A 21 296 43 HOH HOH . G 4 HOH A 22 297 44 HOH HOH . G 4 HOH A 23 298 45 HOH HOH . G 4 HOH A 24 299 46 HOH HOH . G 4 HOH A 25 300 47 HOH HOH . G 4 HOH A 26 301 48 HOH HOH . G 4 HOH A 27 302 49 HOH HOH . G 4 HOH A 28 303 50 HOH HOH . G 4 HOH A 29 304 51 HOH HOH . G 4 HOH A 30 305 52 HOH HOH . G 4 HOH A 31 306 53 HOH HOH . G 4 HOH A 32 307 54 HOH HOH . G 4 HOH A 33 308 55 HOH HOH . G 4 HOH A 34 309 56 HOH HOH . G 4 HOH A 35 310 57 HOH HOH . G 4 HOH A 36 311 58 HOH HOH . G 4 HOH A 37 312 59 HOH HOH . G 4 HOH A 38 313 63 HOH HOH . G 4 HOH A 39 314 64 HOH HOH . G 4 HOH A 40 315 65 HOH HOH . G 4 HOH A 41 316 66 HOH HOH . G 4 HOH A 42 317 67 HOH HOH . G 4 HOH A 43 318 71 HOH HOH . G 4 HOH A 44 319 73 HOH HOH . H 4 HOH B 1 1276 11 HOH HOH . H 4 HOH B 2 1277 12 HOH HOH . H 4 HOH B 3 1278 13 HOH HOH . H 4 HOH B 4 1279 14 HOH HOH . H 4 HOH B 5 1280 15 HOH HOH . H 4 HOH B 6 1281 16 HOH HOH . H 4 HOH B 7 1282 17 HOH HOH . H 4 HOH B 8 1283 18 HOH HOH . H 4 HOH B 9 1284 19 HOH HOH . H 4 HOH B 10 1285 20 HOH HOH . H 4 HOH B 11 1286 21 HOH HOH . H 4 HOH B 12 1287 22 HOH HOH . H 4 HOH B 13 1288 24 HOH HOH . H 4 HOH B 14 1289 25 HOH HOH . H 4 HOH B 15 1290 26 HOH HOH . H 4 HOH B 16 1291 27 HOH HOH . H 4 HOH B 17 1292 33 HOH HOH . H 4 HOH B 18 1293 34 HOH HOH . H 4 HOH B 19 1294 35 HOH HOH . H 4 HOH B 20 1295 36 HOH HOH . H 4 HOH B 21 1296 38 HOH HOH . H 4 HOH B 22 1297 60 HOH HOH . H 4 HOH B 23 1298 61 HOH HOH . H 4 HOH B 24 1299 62 HOH HOH . H 4 HOH B 25 1300 68 HOH HOH . H 4 HOH B 26 1301 69 HOH HOH . H 4 HOH B 27 1302 70 HOH HOH . H 4 HOH B 28 1303 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . D 3 35.812 31.226 67.391 1 64.84 ? N1 FMN 250 A 1 HETATM 2 C C2 FMN . . . D 3 35.799 32.183 68.384 1 65.66 ? C2 FMN 250 A 1 HETATM 3 O O2 FMN . . . D 3 36.354 32.097 69.442 1 65.69 ? O2 FMN 250 A 1 HETATM 4 N N3 FMN . . . D 3 35.121 33.438 68.179 1 65.18 ? N3 FMN 250 A 1 HETATM 5 C C4 FMN . . . D 3 34.405 33.728 66.967 1 66.34 ? C4 FMN 250 A 1 HETATM 6 O O4 FMN . . . D 3 33.857 34.806 66.789 1 68.32 ? O4 FMN 250 A 1 HETATM 7 C C4A FMN . . . D 3 34.383 32.744 65.889 1 65.76 ? C4A FMN 250 A 1 HETATM 8 N N5 FMN . . . D 3 33.773 33.001 64.698 1 65.17 ? N5 FMN 250 A 1 HETATM 9 C C5A FMN . . . D 3 33.854 32.197 63.562 1 64.15 ? C5A FMN 250 A 1 HETATM 10 C C6 FMN . . . D 3 33.261 32.646 62.341 1 64.01 ? C6 FMN 250 A 1 HETATM 11 C C7 FMN . . . D 3 33.378 31.931 61.12 1 62.93 ? C7 FMN 250 A 1 HETATM 12 C C7M FMN . . . D 3 32.738 32.517 59.856 1 63.28 ? C7M FMN 250 A 1 HETATM 13 C C8 FMN . . . D 3 34.142 30.689 61.091 1 62.73 ? C8 FMN 250 A 1 HETATM 14 C C8M FMN . . . D 3 34.394 29.895 59.816 1 62.52 ? C8M FMN 250 A 1 HETATM 15 C C9 FMN . . . D 3 34.736 30.212 62.351 1 63.03 ? C9 FMN 250 A 1 HETATM 16 C C9A FMN . . . D 3 34.629 30.906 63.607 1 64.01 ? C9A FMN 250 A 1 HETATM 17 N N10 FMN . . . D 3 35.236 30.599 64.99 1 64.3 ? N10 FMN 250 A 1 HETATM 18 C C10 FMN . . . D 3 35.162 31.457 66.127 1 65.05 ? C10 FMN 250 A 1 HETATM 19 C C1' FMN . . . D 3 36.053 29.326 65.244 1 62.13 ? C1' FMN 250 A 1 HETATM 20 C C2' FMN . . . D 3 37.612 29.563 65.44 1 59.22 ? C2' FMN 250 A 1 HETATM 21 O O2' FMN . . . D 3 38.178 29.87 64.222 1 55.97 ? O2' FMN 250 A 1 HETATM 22 C C3' FMN . . . D 3 38.345 28.394 66.032 1 58.69 ? C3' FMN 250 A 1 HETATM 23 O O3' FMN . . . D 3 37.831 27.104 65.729 1 60.22 ? O3' FMN 250 A 1 HETATM 24 C C4' FMN . . . D 3 38.365 28.404 67.546 1 60.76 ? C4' FMN 250 A 1 HETATM 25 O O4' FMN . . . D 3 37.981 29.588 68.361 1 58.36 ? O4' FMN 250 A 1 HETATM 26 C C5' FMN . . . D 3 39.792 27.936 67.6 1 60.95 ? C5' FMN 250 A 1 HETATM 27 O O5' FMN . . . D 3 40.493 28.573 68.823 1 62.92 ? O5' FMN 250 A 1 HETATM 28 P P FMN . . . D 3 41.899 28.132 69.235 1 64.81 ? P FMN 250 A 1 HETATM 29 O O1P FMN . . . D 3 41.88 29.194 70.353 1 67.29 ? O1P FMN 250 A 1 HETATM 30 O O2P FMN . . . D 3 41.93 26.796 69.847 1 63.04 ? O2P FMN 250 A 1 HETATM 31 O O3P FMN . . . D 3 42.92 28.369 68.106 1 60.98 ? O3P FMN 250 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #