data_1WVA # _model_server_result.job_id keV1obn0NaUmrHvAp7nUEA _model_server_result.datetime_utc '2024-11-08 13:41:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1wva # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2315}' # _entry.id 1WVA # _exptl.entry_id 1WVA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1WVA _cell.length_a 90.602 _cell.length_b 90.602 _cell.length_c 69.311 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WVA _symmetry.cell_setting ? _symmetry.Int_Tables_number 143 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1,2,3 B,F,G,H,J 2 1,4,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 90.602 0 0 5 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 45.301 78.463634 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 101 A HIS 101 1_555 C MN MN . A MN 2314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc2 A OD2 ASP 124 A ASP 124 1_555 C MN MN . A MN 2314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc3 A OD1 ASP 124 A ASP 124 1_555 D MN MN . A MN 2315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc4 A ND1 HIS 126 A HIS 126 1_555 D MN MN . A MN 2315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc5 A OD2 ASP 128 A ASP 128 1_555 C MN MN . A MN 2314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc6 A OD2 ASP 232 A ASP 232 1_555 C MN MN . A MN 2314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc7 A OD2 ASP 232 A ASP 232 1_555 D MN MN . A MN 2315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc8 A OD1 ASP 234 A ASP 234 1_555 D MN MN . A MN 2315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc9 A OD2 ASP 234 A ASP 234 1_555 D MN MN . A MN 2315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc10 E O1 S2C . A S2C 1317 1_555 C MN MN . A MN 2314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc11 E O2 S2C . A S2C 1317 1_555 C MN MN . A MN 2314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc12 E O1 S2C . A S2C 1317 1_555 D MN MN . A MN 2315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc13 B ND1 HIS 101 B HIS 101 1_555 F MN MN . B MN 1314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc14 B OD2 ASP 124 B ASP 124 1_555 F MN MN . B MN 1314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc15 B OD1 ASP 124 B ASP 124 1_555 G MN MN . B MN 1315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc16 B ND1 HIS 126 B HIS 126 1_555 G MN MN . B MN 1315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc17 B OD2 ASP 128 B ASP 128 1_555 F MN MN . B MN 1314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc18 B OD2 ASP 232 B ASP 232 1_555 F MN MN . B MN 1314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc19 B OD2 ASP 232 B ASP 232 1_555 G MN MN . B MN 1315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc20 B OD2 ASP 234 B ASP 234 1_555 G MN MN . B MN 1315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc21 B OD1 ASP 234 B ASP 234 1_555 G MN MN . B MN 1315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc22 F MN MN . B MN 1314 1_555 H O1 S2C . B S2C 1316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc23 F MN MN . B MN 1314 1_555 H O2 S2C . B S2C 1316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc24 G MN MN . B MN 1315 1_555 H O1 S2C . B S2C 1316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1WVA _atom_sites.fract_transf_matrix[1][1] 0.011037 _atom_sites.fract_transf_matrix[1][2] 0.006372 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012745 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014428 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 2314 2314 MN MN . D 2 MN A 1 2315 2315 MN MN . E 3 S2C A 1 1317 1317 S2C S2C . F 2 MN B 1 1314 1314 MN MN . G 2 MN B 1 1315 1315 MN MN . H 3 S2C B 1 1316 1316 S2C S2C . I 4 HOH A 1 2316 2 HOH HOH . I 4 HOH A 2 2317 3 HOH HOH . I 4 HOH A 3 2318 5 HOH HOH . I 4 HOH A 4 2319 9 HOH HOH . I 4 HOH A 5 2320 13 HOH HOH . I 4 HOH A 6 2321 14 HOH HOH . I 4 HOH A 7 2322 15 HOH HOH . I 4 HOH A 8 2323 17 HOH HOH . I 4 HOH A 9 2324 18 HOH HOH . I 4 HOH A 10 2325 26 HOH HOH . I 4 HOH A 11 2326 29 HOH HOH . I 4 HOH A 12 2327 30 HOH HOH . I 4 HOH A 13 2328 32 HOH HOH . I 4 HOH A 14 2329 34 HOH HOH . I 4 HOH A 15 2330 35 HOH HOH . I 4 HOH A 16 2331 36 HOH HOH . I 4 HOH A 17 2332 37 HOH HOH . I 4 HOH A 18 2333 38 HOH HOH . I 4 HOH A 19 2334 39 HOH HOH . I 4 HOH A 20 2335 40 HOH HOH . I 4 HOH A 21 2336 41 HOH HOH . I 4 HOH A 22 2337 42 HOH HOH . I 4 HOH A 23 2338 44 HOH HOH . I 4 HOH A 24 2339 45 HOH HOH . I 4 HOH A 25 2340 47 HOH HOH . I 4 HOH A 26 2341 51 HOH HOH . I 4 HOH A 27 2342 53 HOH HOH . I 4 HOH A 28 2343 54 HOH HOH . I 4 HOH A 29 2344 56 HOH HOH . I 4 HOH A 30 2345 58 HOH HOH . I 4 HOH A 31 2346 60 HOH HOH . I 4 HOH A 32 2347 61 HOH HOH . I 4 HOH A 33 2348 62 HOH HOH . I 4 HOH A 34 2349 64 HOH HOH . I 4 HOH A 35 2350 66 HOH HOH . I 4 HOH A 36 2351 67 HOH HOH . I 4 HOH A 37 2352 75 HOH HOH . I 4 HOH A 38 2353 78 HOH HOH . I 4 HOH A 39 2354 80 HOH HOH . I 4 HOH A 40 2355 84 HOH HOH . I 4 HOH A 41 2356 85 HOH HOH . I 4 HOH A 42 2357 87 HOH HOH . I 4 HOH A 43 2358 88 HOH HOH . I 4 HOH A 44 2359 91 HOH HOH . I 4 HOH A 45 2360 92 HOH HOH . I 4 HOH A 46 2361 93 HOH HOH . I 4 HOH A 47 2362 94 HOH HOH . I 4 HOH A 48 2363 95 HOH HOH . I 4 HOH A 49 2364 97 HOH HOH . I 4 HOH A 50 2365 98 HOH HOH . I 4 HOH A 51 2366 99 HOH HOH . I 4 HOH A 52 2367 100 HOH HOH . I 4 HOH A 53 2368 103 HOH HOH . I 4 HOH A 54 2369 107 HOH HOH . I 4 HOH A 55 2370 111 HOH HOH . I 4 HOH A 56 2371 112 HOH HOH . I 4 HOH A 57 2372 113 HOH HOH . I 4 HOH A 58 2373 117 HOH HOH . I 4 HOH A 59 2374 123 HOH HOH . I 4 HOH A 60 2375 125 HOH HOH . I 4 HOH A 61 2376 127 HOH HOH . I 4 HOH A 62 2377 129 HOH HOH . I 4 HOH A 63 2378 132 HOH HOH . I 4 HOH A 64 2379 134 HOH HOH . I 4 HOH A 65 2380 135 HOH HOH . I 4 HOH A 66 2381 138 HOH HOH . I 4 HOH A 67 2382 140 HOH HOH . I 4 HOH A 68 2383 141 HOH HOH . I 4 HOH A 69 2384 142 HOH HOH . I 4 HOH A 70 2385 144 HOH HOH . I 4 HOH A 71 2386 145 HOH HOH . I 4 HOH A 72 2387 146 HOH HOH . I 4 HOH A 73 2388 148 HOH HOH . I 4 HOH A 74 2389 149 HOH HOH . I 4 HOH A 75 2390 150 HOH HOH . I 4 HOH A 76 2391 151 HOH HOH . I 4 HOH A 77 2392 152 HOH HOH . I 4 HOH A 78 2393 153 HOH HOH . I 4 HOH A 79 2394 155 HOH HOH . I 4 HOH A 80 2395 156 HOH HOH . I 4 HOH A 81 2396 157 HOH HOH . I 4 HOH A 82 2397 158 HOH HOH . I 4 HOH A 83 2398 160 HOH HOH . I 4 HOH A 84 2399 163 HOH HOH . I 4 HOH A 85 2400 165 HOH HOH . I 4 HOH A 86 2401 166 HOH HOH . I 4 HOH A 87 2402 167 HOH HOH . I 4 HOH A 88 2403 168 HOH HOH . I 4 HOH A 89 2404 170 HOH HOH . I 4 HOH A 90 2405 171 HOH HOH . I 4 HOH A 91 2406 172 HOH HOH . I 4 HOH A 92 2407 173 HOH HOH . I 4 HOH A 93 2408 178 HOH HOH . I 4 HOH A 94 2409 179 HOH HOH . I 4 HOH A 95 2410 180 HOH HOH . I 4 HOH A 96 2411 181 HOH HOH . I 4 HOH A 97 2412 184 HOH HOH . I 4 HOH A 98 2413 189 HOH HOH . I 4 HOH A 99 2414 192 HOH HOH . I 4 HOH A 100 2415 194 HOH HOH . I 4 HOH A 101 2416 196 HOH HOH . I 4 HOH A 102 2417 197 HOH HOH . I 4 HOH A 103 2418 198 HOH HOH . I 4 HOH A 104 2419 199 HOH HOH . I 4 HOH A 105 2420 200 HOH HOH . I 4 HOH A 106 2421 201 HOH HOH . J 4 HOH B 1 1317 1 HOH HOH . J 4 HOH B 2 1318 4 HOH HOH . J 4 HOH B 3 1319 6 HOH HOH . J 4 HOH B 4 1320 7 HOH HOH . J 4 HOH B 5 1321 8 HOH HOH . J 4 HOH B 6 1322 10 HOH HOH . J 4 HOH B 7 1323 11 HOH HOH . J 4 HOH B 8 1324 12 HOH HOH . J 4 HOH B 9 1325 16 HOH HOH . J 4 HOH B 10 1326 19 HOH HOH . J 4 HOH B 11 1327 20 HOH HOH . J 4 HOH B 12 1328 21 HOH HOH . J 4 HOH B 13 1329 22 HOH HOH . J 4 HOH B 14 1330 23 HOH HOH . J 4 HOH B 15 1331 24 HOH HOH . J 4 HOH B 16 1332 25 HOH HOH . J 4 HOH B 17 1333 27 HOH HOH . J 4 HOH B 18 1334 28 HOH HOH . J 4 HOH B 19 1335 31 HOH HOH . J 4 HOH B 20 1336 33 HOH HOH . J 4 HOH B 21 1337 43 HOH HOH . J 4 HOH B 22 1338 46 HOH HOH . J 4 HOH B 23 1339 48 HOH HOH . J 4 HOH B 24 1340 49 HOH HOH . J 4 HOH B 25 1341 50 HOH HOH . J 4 HOH B 26 1342 52 HOH HOH . J 4 HOH B 27 1343 55 HOH HOH . J 4 HOH B 28 1344 57 HOH HOH . J 4 HOH B 29 1345 59 HOH HOH . J 4 HOH B 30 1346 63 HOH HOH . J 4 HOH B 31 1347 65 HOH HOH . J 4 HOH B 32 1348 68 HOH HOH . J 4 HOH B 33 1349 69 HOH HOH . J 4 HOH B 34 1350 70 HOH HOH . J 4 HOH B 35 1351 71 HOH HOH . J 4 HOH B 36 1352 72 HOH HOH . J 4 HOH B 37 1353 73 HOH HOH . J 4 HOH B 38 1354 74 HOH HOH . J 4 HOH B 39 1355 76 HOH HOH . J 4 HOH B 40 1356 77 HOH HOH . J 4 HOH B 41 1357 79 HOH HOH . J 4 HOH B 42 1358 81 HOH HOH . J 4 HOH B 43 1359 82 HOH HOH . J 4 HOH B 44 1360 83 HOH HOH . J 4 HOH B 45 1361 86 HOH HOH . J 4 HOH B 46 1362 89 HOH HOH . J 4 HOH B 47 1363 90 HOH HOH . J 4 HOH B 48 1364 96 HOH HOH . J 4 HOH B 49 1365 101 HOH HOH . J 4 HOH B 50 1366 102 HOH HOH . J 4 HOH B 51 1367 104 HOH HOH . J 4 HOH B 52 1368 105 HOH HOH . J 4 HOH B 53 1369 106 HOH HOH . J 4 HOH B 54 1370 108 HOH HOH . J 4 HOH B 55 1371 109 HOH HOH . J 4 HOH B 56 1372 110 HOH HOH . J 4 HOH B 57 1373 114 HOH HOH . J 4 HOH B 58 1374 115 HOH HOH . J 4 HOH B 59 1375 116 HOH HOH . J 4 HOH B 60 1376 118 HOH HOH . J 4 HOH B 61 1377 119 HOH HOH . J 4 HOH B 62 1378 120 HOH HOH . J 4 HOH B 63 1379 121 HOH HOH . J 4 HOH B 64 1380 122 HOH HOH . J 4 HOH B 65 1381 124 HOH HOH . J 4 HOH B 66 1382 126 HOH HOH . J 4 HOH B 67 1383 128 HOH HOH . J 4 HOH B 68 1384 130 HOH HOH . J 4 HOH B 69 1385 131 HOH HOH . J 4 HOH B 70 1386 133 HOH HOH . J 4 HOH B 71 1387 136 HOH HOH . J 4 HOH B 72 1388 137 HOH HOH . J 4 HOH B 73 1389 139 HOH HOH . J 4 HOH B 74 1390 143 HOH HOH . J 4 HOH B 75 1391 147 HOH HOH . J 4 HOH B 76 1392 154 HOH HOH . J 4 HOH B 77 1393 159 HOH HOH . J 4 HOH B 78 1394 161 HOH HOH . J 4 HOH B 79 1395 162 HOH HOH . J 4 HOH B 80 1396 164 HOH HOH . J 4 HOH B 81 1397 169 HOH HOH . J 4 HOH B 82 1398 174 HOH HOH . J 4 HOH B 83 1399 175 HOH HOH . J 4 HOH B 84 1400 176 HOH HOH . J 4 HOH B 85 1401 177 HOH HOH . J 4 HOH B 86 1402 182 HOH HOH . J 4 HOH B 87 1403 183 HOH HOH . J 4 HOH B 88 1404 185 HOH HOH . J 4 HOH B 89 1405 186 HOH HOH . J 4 HOH B 90 1406 187 HOH HOH . J 4 HOH B 91 1407 188 HOH HOH . J 4 HOH B 92 1408 190 HOH HOH . J 4 HOH B 93 1409 191 HOH HOH . J 4 HOH B 94 1410 193 HOH HOH . J 4 HOH B 95 1411 195 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 15.019 _atom_site.Cartn_y 13.69 _atom_site.Cartn_z -4.041 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 14.07 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 2315 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #