data_1WVR # _model_server_result.job_id Yh5rsqvXRxO5L0Lhy897bQ _model_server_result.datetime_utc '2024-10-25 20:31:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1wvr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":308}' # _entry.id 1WVR # _exptl.entry_id 1WVR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1WVR _cell.length_a 83.374 _cell.length_b 83.374 _cell.length_c 85.68 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WVR _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K 1 1 A,B,C,D,E,F,G,H,I,J,K 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 56 A CYS 56 1_555 A SG CYS 134 A CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 73 A CYS 73 1_555 A SG CYS 148 A CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 129 A CYS 129 1_555 A SG CYS 145 A CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 A SG CYS 167 A CYS 167 1_555 A SG CYS 174 A CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 A SG CYS 170 A CYS 170 1_555 A SG CYS 179 A CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 A SG CYS 183 A CYS 183 1_555 A SG CYS 216 A CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf7 A SG CYS 192 A CYS 192 1_555 A SG CYS 210 A CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 A SG CYS 201 A CYS 201 1_555 A SG CYS 214 A CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A O ASN 1 A ASN 1 1_555 J CD CD . A CD 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.828 ? metalc ? metalc2 A OD1 ASP 5 A ASP 5 1_555 J CD CD . A CD 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc3 A OD2 ASP 5 A ASP 5 1_555 J CD CD . A CD 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc4 A OE1 GLU 7 A GLU 7 1_555 F CD CD . A CD 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.869 ? metalc ? metalc5 A OE2 GLU 7 A GLU 7 1_555 F CD CD . A CD 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc6 A OE2 GLU 13 A GLU 13 1_555 E CD CD . A CD 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc7 A OE2 GLU 17 A GLU 17 1_555 F CD CD . A CD 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc8 A OE1 GLU 40 A GLU 40 1_555 C CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc9 A OE2 GLU 40 A GLU 40 1_555 C CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc10 A OE1 GLU 40 A GLU 40 7_555 C CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc11 A OE1 GLU 44 A GLU 44 7_555 E CD CD . A CD 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc12 A OE2 GLU 44 A GLU 44 7_555 E CD CD . A CD 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.885 ? metalc ? metalc13 A NE2 HIS 60 A HIS 60 1_555 B CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc14 A ND1 HIS 91 A HIS 91 1_555 H CD CD . A CD 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc15 A ND1 HIS 94 A HIS 94 1_555 H CD CD . A CD 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? metalc ? metalc16 A NE2 HIS 115 A HIS 115 1_555 B CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc17 A OD1 ASP 173 A ASP 173 1_555 G CD CD . A CD 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc18 A OD2 ASP 173 A ASP 173 1_555 G CD CD . A CD 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc19 A OD1 ASP 175 A ASP 175 1_555 D CD CD . A CD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? metalc ? metalc20 A OD2 ASP 175 A ASP 175 1_555 D CD CD . A CD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc21 A OE1 GLU 188 A GLU 188 6_455 J CD CD . A CD 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc22 A OD1 ASP 193 A ASP 193 1_555 I CD CD . A CD 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc23 A OD2 ASP 193 A ASP 193 1_555 I CD CD . A CD 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.89 ? metalc ? metalc24 B CD CD . A CD 301 1_555 K O HOH . A HOH 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? metalc ? metalc25 B CD CD . A CD 301 1_555 K O HOH . A HOH 469 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.09 ? metalc ? metalc26 B CD CD . A CD 301 1_555 K O HOH . A HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc27 C CD CD . A CD 302 1_555 K O HOH . A HOH 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc28 D CD CD . A CD 303 1_555 K O HOH . A HOH 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc29 F CD CD . A CD 305 1_555 K O HOH . A HOH 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.891 ? metalc ? metalc30 G CD CD . A CD 306 1_555 K O HOH . A HOH 435 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc31 G CD CD . A CD 306 1_555 K O HOH . A HOH 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc32 H CD CD . A CD 307 1_555 K O HOH . A HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? metalc ? metalc33 H CD CD . A CD 307 1_555 K O HOH . A HOH 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.999 ? metalc ? metalc34 I CD CD . A CD 308 1_555 K O HOH . A HOH 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1WVR _atom_sites.fract_transf_matrix[1][1] 0.011994 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011994 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011671 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 301 301 CD CD . C 2 CD A 1 302 302 CD CD . D 2 CD A 1 303 303 CD CD . E 2 CD A 1 304 304 CD CD . F 2 CD A 1 305 305 CD CD . G 2 CD A 1 306 306 CD CD . H 2 CD A 1 307 307 CD CD . I 2 CD A 1 308 308 CD CD . J 2 CD A 1 309 309 CD CD . K 3 HOH A 1 401 401 HOH HOH . K 3 HOH A 2 402 402 HOH HOH . K 3 HOH A 3 403 403 HOH HOH . K 3 HOH A 4 404 404 HOH HOH . K 3 HOH A 5 405 405 HOH HOH . K 3 HOH A 6 406 406 HOH HOH . K 3 HOH A 7 407 407 HOH HOH . K 3 HOH A 8 408 408 HOH HOH . K 3 HOH A 9 409 409 HOH HOH . K 3 HOH A 10 410 410 HOH HOH . K 3 HOH A 11 411 411 HOH HOH . K 3 HOH A 12 412 412 HOH HOH . K 3 HOH A 13 413 413 HOH HOH . K 3 HOH A 14 414 414 HOH HOH . K 3 HOH A 15 415 415 HOH HOH . K 3 HOH A 16 416 416 HOH HOH . K 3 HOH A 17 417 417 HOH HOH . K 3 HOH A 18 418 418 HOH HOH . K 3 HOH A 19 419 419 HOH HOH . K 3 HOH A 20 420 420 HOH HOH . K 3 HOH A 21 421 421 HOH HOH . K 3 HOH A 22 422 422 HOH HOH . K 3 HOH A 23 423 423 HOH HOH . K 3 HOH A 24 424 424 HOH HOH . K 3 HOH A 25 425 425 HOH HOH . K 3 HOH A 26 426 426 HOH HOH . K 3 HOH A 27 427 427 HOH HOH . K 3 HOH A 28 428 428 HOH HOH . K 3 HOH A 29 429 429 HOH HOH . K 3 HOH A 30 430 430 HOH HOH . K 3 HOH A 31 431 431 HOH HOH . K 3 HOH A 32 432 432 HOH HOH . K 3 HOH A 33 433 433 HOH HOH . K 3 HOH A 34 434 434 HOH HOH . K 3 HOH A 35 435 435 HOH HOH . K 3 HOH A 36 436 436 HOH HOH . K 3 HOH A 37 437 437 HOH HOH . K 3 HOH A 38 438 438 HOH HOH . K 3 HOH A 39 439 439 HOH HOH . K 3 HOH A 40 440 440 HOH HOH . K 3 HOH A 41 441 441 HOH HOH . K 3 HOH A 42 442 442 HOH HOH . K 3 HOH A 43 443 443 HOH HOH . K 3 HOH A 44 444 444 HOH HOH . K 3 HOH A 45 445 445 HOH HOH . K 3 HOH A 46 446 446 HOH HOH . K 3 HOH A 47 447 447 HOH HOH . K 3 HOH A 48 448 448 HOH HOH . K 3 HOH A 49 449 449 HOH HOH . K 3 HOH A 50 450 450 HOH HOH . K 3 HOH A 51 451 451 HOH HOH . K 3 HOH A 52 452 452 HOH HOH . K 3 HOH A 53 453 453 HOH HOH . K 3 HOH A 54 454 454 HOH HOH . K 3 HOH A 55 455 455 HOH HOH . K 3 HOH A 56 456 456 HOH HOH . K 3 HOH A 57 457 457 HOH HOH . K 3 HOH A 58 458 458 HOH HOH . K 3 HOH A 59 459 459 HOH HOH . K 3 HOH A 60 460 460 HOH HOH . K 3 HOH A 61 461 461 HOH HOH . K 3 HOH A 62 462 462 HOH HOH . K 3 HOH A 63 463 463 HOH HOH . K 3 HOH A 64 464 464 HOH HOH . K 3 HOH A 65 465 465 HOH HOH . K 3 HOH A 66 466 466 HOH HOH . K 3 HOH A 67 467 467 HOH HOH . K 3 HOH A 68 468 468 HOH HOH . K 3 HOH A 69 469 469 HOH HOH . K 3 HOH A 70 470 470 HOH HOH . K 3 HOH A 71 471 471 HOH HOH . K 3 HOH A 72 472 472 HOH HOH . K 3 HOH A 73 473 473 HOH HOH . K 3 HOH A 74 474 474 HOH HOH . K 3 HOH A 75 475 475 HOH HOH . K 3 HOH A 76 476 476 HOH HOH . K 3 HOH A 77 477 477 HOH HOH . K 3 HOH A 78 478 478 HOH HOH . K 3 HOH A 79 479 479 HOH HOH . K 3 HOH A 80 480 480 HOH HOH . K 3 HOH A 81 481 481 HOH HOH . K 3 HOH A 82 482 482 HOH HOH . K 3 HOH A 83 483 483 HOH HOH . K 3 HOH A 84 484 484 HOH HOH . K 3 HOH A 85 485 485 HOH HOH . K 3 HOH A 86 486 486 HOH HOH . K 3 HOH A 87 487 487 HOH HOH . K 3 HOH A 88 488 488 HOH HOH . K 3 HOH A 89 489 489 HOH HOH . K 3 HOH A 90 490 490 HOH HOH . K 3 HOH A 91 491 491 HOH HOH . K 3 HOH A 92 492 492 HOH HOH . K 3 HOH A 93 493 493 HOH HOH . K 3 HOH A 94 494 494 HOH HOH . K 3 HOH A 95 495 495 HOH HOH . K 3 HOH A 96 496 496 HOH HOH . K 3 HOH A 97 497 497 HOH HOH . K 3 HOH A 98 498 498 HOH HOH . K 3 HOH A 99 499 499 HOH HOH . K 3 HOH A 100 500 500 HOH HOH . K 3 HOH A 101 501 501 HOH HOH . K 3 HOH A 102 502 502 HOH HOH . K 3 HOH A 103 503 503 HOH HOH . K 3 HOH A 104 504 504 HOH HOH . K 3 HOH A 105 505 505 HOH HOH . K 3 HOH A 106 506 506 HOH HOH . K 3 HOH A 107 507 507 HOH HOH . K 3 HOH A 108 508 508 HOH HOH . K 3 HOH A 109 509 509 HOH HOH . K 3 HOH A 110 510 510 HOH HOH . K 3 HOH A 111 511 511 HOH HOH . K 3 HOH A 112 512 512 HOH HOH . K 3 HOH A 113 513 513 HOH HOH . K 3 HOH A 114 514 514 HOH HOH . K 3 HOH A 115 515 515 HOH HOH . K 3 HOH A 116 516 516 HOH HOH . K 3 HOH A 117 517 517 HOH HOH . K 3 HOH A 118 518 518 HOH HOH . K 3 HOH A 119 519 519 HOH HOH . K 3 HOH A 120 520 520 HOH HOH . K 3 HOH A 121 521 521 HOH HOH . K 3 HOH A 122 522 522 HOH HOH . K 3 HOH A 123 523 523 HOH HOH . K 3 HOH A 124 524 524 HOH HOH . K 3 HOH A 125 525 525 HOH HOH . K 3 HOH A 126 526 526 HOH HOH . K 3 HOH A 127 527 527 HOH HOH . K 3 HOH A 128 528 528 HOH HOH . K 3 HOH A 129 529 529 HOH HOH . K 3 HOH A 130 530 530 HOH HOH . K 3 HOH A 131 531 531 HOH HOH . K 3 HOH A 132 532 532 HOH HOH . K 3 HOH A 133 533 533 HOH HOH . K 3 HOH A 134 534 534 HOH HOH . K 3 HOH A 135 535 535 HOH HOH . K 3 HOH A 136 536 536 HOH HOH . K 3 HOH A 137 537 537 HOH HOH . K 3 HOH A 138 538 538 HOH HOH . K 3 HOH A 139 539 539 HOH HOH . K 3 HOH A 140 540 540 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 2 _atom_site.Cartn_x 47.112 _atom_site.Cartn_y 43.13 _atom_site.Cartn_z 14.885 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 104.64 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 308 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #