data_1WY4
#
_model_server_result.job_id            24KsQ5PdoCbIe3snlL8mMw 
_model_server_result.datetime_utc      '2024-12-29 13:36:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1wy4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":100}' 
#
_entry.id    1WY4 
#
_exptl.entry_id    1WY4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1WY4 
_cell.length_a            19.72 
_cell.length_b            40.225 
_cell.length_c            75.379 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1WY4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C TRP 23 A TRP 64 1_555 A N NLE 24 A NLE 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? 
covale ? covale2 A C NLE 24 A NLE 65 1_555 A N GLN 25 A GLN 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? 
metalc ? metalc1 C I IOD . A IOD 99 1_555 D NA NA . A NA 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
metalc ? metalc2 D NA NA . A NA 100 1_555 E O HOH . A HOH 1007 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1WY4 
_atom_sites.fract_transf_matrix[1][1]    0.05071 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02486 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013266 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 IOD A 1 98 98 IOD I . 
C 2 IOD A 1 99 99 IOD I . 
D 3 NA A 1 100 99 NA I . 
E 4 HOH A 1 1001 1001 HOH HOH . 
E 4 HOH A 2 1002 1002 HOH HOH . 
E 4 HOH A 3 1003 1003 HOH HOH . 
E 4 HOH A 4 1004 1004 HOH HOH . 
E 4 HOH A 5 1005 1005 HOH HOH . 
E 4 HOH A 6 1006 1006 HOH HOH . 
E 4 HOH A 7 1007 1007 HOH HOH . 
E 4 HOH A 8 1008 1008 HOH HOH . 
E 4 HOH A 9 1009 1009 HOH HOH . 
E 4 HOH A 10 1010 1010 HOH HOH . 
E 4 HOH A 11 1011 1011 HOH HOH . 
E 4 HOH A 12 1012 1012 HOH HOH . 
E 4 HOH A 13 1013 1013 HOH HOH . 
E 4 HOH A 14 1014 1014 HOH HOH . 
E 4 HOH A 15 1015 1015 HOH HOH . 
E 4 HOH A 16 1016 1016 HOH HOH . 
E 4 HOH A 17 1017 1017 HOH HOH . 
E 4 HOH A 18 1018 1018 HOH HOH . 
E 4 HOH A 19 1019 1019 HOH HOH . 
E 4 HOH A 20 1020 1020 HOH HOH . 
E 4 HOH A 21 1021 1021 HOH HOH . 
E 4 HOH A 22 1022 1022 HOH HOH . 
E 4 HOH A 23 1023 1023 HOH HOH . 
E 4 HOH A 24 1024 1024 HOH HOH . 
E 4 HOH A 25 1025 1025 HOH HOH . 
E 4 HOH A 26 1026 1026 HOH HOH . 
E 4 HOH A 27 1027 1027 HOH HOH . 
E 4 HOH A 28 1028 1028 HOH HOH . 
E 4 HOH A 29 1029 1029 HOH HOH . 
E 4 HOH A 30 1030 1030 HOH HOH . 
E 4 HOH A 31 1031 1031 HOH HOH . 
E 4 HOH A 32 1032 1032 HOH HOH . 
E 4 HOH A 33 1033 1033 HOH HOH . 
E 4 HOH A 34 1034 1034 HOH HOH . 
E 4 HOH A 35 1035 1035 HOH HOH . 
E 4 HOH A 36 1036 1036 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               21.233 
_atom_site.Cartn_y               -9.144 
_atom_site.Cartn_z               66.303 
_atom_site.occupancy             0.5 
_atom_site.B_iso_or_equiv        24.33 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           100 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#