data_1WZF # _model_server_result.job_id i5Bz09Rf2nwEO1WLMc8Siw _model_server_result.datetime_utc '2024-11-26 23:12:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1wzf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":801}' # _entry.id 1WZF # _exptl.entry_id 1WZF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.93 _cell.angle_gamma 90 _cell.entry_id 1WZF _cell.length_a 40.81 _cell.length_b 62.875 _cell.length_c 77.693 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WZF _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 20 A HIS 20 1_555 E FE YOL . A YOL 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc2 A OE2 GLU 24 A GLU 24 1_555 E FE YOL . A YOL 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc3 B NE2 HIS 20 B HIS 20 1_555 G FE YOL . B YOL 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc4 B OE2 GLU 24 B GLU 24 1_555 G FE YOL . B YOL 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 1WZF _atom_sites.fract_transf_matrix[1][1] 0.024504 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003414 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015905 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012995 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 701 701 SO4 SO4 . D 2 SO4 A 1 702 702 SO4 SO4 . E 3 YOL A 1 901 901 YOL YOL . F 2 SO4 B 1 703 703 SO4 SO4 . G 3 YOL B 1 902 902 YOL YOL . H 4 GOL B 1 801 801 GOL GOL . I 5 HOH A 1 902 1 HOH HOH . I 5 HOH A 2 903 5 HOH HOH . I 5 HOH A 3 904 7 HOH HOH . I 5 HOH A 4 905 9 HOH HOH . I 5 HOH A 5 906 11 HOH HOH . I 5 HOH A 6 907 12 HOH HOH . I 5 HOH A 7 908 16 HOH HOH . I 5 HOH A 8 909 17 HOH HOH . I 5 HOH A 9 910 20 HOH HOH . I 5 HOH A 10 911 24 HOH HOH . I 5 HOH A 11 912 25 HOH HOH . I 5 HOH A 12 913 27 HOH HOH . I 5 HOH A 13 914 28 HOH HOH . I 5 HOH A 14 915 30 HOH HOH . I 5 HOH A 15 916 31 HOH HOH . I 5 HOH A 16 917 33 HOH HOH . I 5 HOH A 17 918 36 HOH HOH . I 5 HOH A 18 919 44 HOH HOH . I 5 HOH A 19 920 45 HOH HOH . I 5 HOH A 20 921 46 HOH HOH . I 5 HOH A 21 922 47 HOH HOH . I 5 HOH A 22 923 50 HOH HOH . I 5 HOH A 23 924 57 HOH HOH . I 5 HOH A 24 925 58 HOH HOH . I 5 HOH A 25 926 59 HOH HOH . I 5 HOH A 26 927 64 HOH HOH . I 5 HOH A 27 928 68 HOH HOH . I 5 HOH A 28 929 71 HOH HOH . I 5 HOH A 29 930 72 HOH HOH . I 5 HOH A 30 931 74 HOH HOH . I 5 HOH A 31 932 76 HOH HOH . I 5 HOH A 32 933 77 HOH HOH . I 5 HOH A 33 934 78 HOH HOH . I 5 HOH A 34 935 79 HOH HOH . I 5 HOH A 35 936 82 HOH HOH . I 5 HOH A 36 937 84 HOH HOH . I 5 HOH A 37 938 87 HOH HOH . I 5 HOH A 38 939 88 HOH HOH . I 5 HOH A 39 940 93 HOH HOH . I 5 HOH A 40 941 95 HOH HOH . I 5 HOH A 41 942 96 HOH HOH . I 5 HOH A 42 943 97 HOH HOH . I 5 HOH A 43 944 98 HOH HOH . I 5 HOH A 44 945 99 HOH HOH . I 5 HOH A 45 946 100 HOH HOH . I 5 HOH A 46 947 101 HOH HOH . I 5 HOH A 47 948 103 HOH HOH . I 5 HOH A 48 949 106 HOH HOH . I 5 HOH A 49 950 108 HOH HOH . I 5 HOH A 50 951 109 HOH HOH . I 5 HOH A 51 952 111 HOH HOH . I 5 HOH A 52 953 112 HOH HOH . I 5 HOH A 53 954 115 HOH HOH . I 5 HOH A 54 955 116 HOH HOH . I 5 HOH A 55 956 117 HOH HOH . I 5 HOH A 56 957 118 HOH HOH . I 5 HOH A 57 958 122 HOH HOH . I 5 HOH A 58 959 124 HOH HOH . I 5 HOH A 59 960 125 HOH HOH . I 5 HOH A 60 961 129 HOH HOH . I 5 HOH A 61 962 130 HOH HOH . I 5 HOH A 62 963 131 HOH HOH . I 5 HOH A 63 964 132 HOH HOH . I 5 HOH A 64 965 135 HOH HOH . I 5 HOH A 65 966 137 HOH HOH . I 5 HOH A 66 967 138 HOH HOH . I 5 HOH A 67 968 140 HOH HOH . I 5 HOH A 68 969 144 HOH HOH . I 5 HOH A 69 970 145 HOH HOH . I 5 HOH A 70 971 148 HOH HOH . I 5 HOH A 71 972 149 HOH HOH . I 5 HOH A 72 973 151 HOH HOH . I 5 HOH A 73 974 152 HOH HOH . I 5 HOH A 74 975 156 HOH HOH . I 5 HOH A 75 976 157 HOH HOH . I 5 HOH A 76 977 158 HOH HOH . I 5 HOH A 77 978 159 HOH HOH . I 5 HOH A 78 979 161 HOH HOH . I 5 HOH A 79 980 162 HOH HOH . I 5 HOH A 80 981 169 HOH HOH . I 5 HOH A 81 982 170 HOH HOH . I 5 HOH A 82 983 176 HOH HOH . I 5 HOH A 83 984 177 HOH HOH . I 5 HOH A 84 985 180 HOH HOH . I 5 HOH A 85 986 183 HOH HOH . I 5 HOH A 86 987 186 HOH HOH . I 5 HOH A 87 988 191 HOH HOH . I 5 HOH A 88 989 192 HOH HOH . I 5 HOH A 89 990 194 HOH HOH . I 5 HOH A 90 991 195 HOH HOH . I 5 HOH A 91 992 197 HOH HOH . I 5 HOH A 92 993 198 HOH HOH . I 5 HOH A 93 994 199 HOH HOH . I 5 HOH A 94 995 201 HOH HOH . I 5 HOH A 95 996 203 HOH HOH . I 5 HOH A 96 997 206 HOH HOH . I 5 HOH A 97 998 207 HOH HOH . I 5 HOH A 98 999 209 HOH HOH . I 5 HOH A 99 1000 212 HOH HOH . I 5 HOH A 100 1001 219 HOH HOH . I 5 HOH A 101 1002 223 HOH HOH . I 5 HOH A 102 1003 226 HOH HOH . I 5 HOH A 103 1004 232 HOH HOH . I 5 HOH A 104 1005 233 HOH HOH . I 5 HOH A 105 1006 234 HOH HOH . I 5 HOH A 106 1007 239 HOH HOH . I 5 HOH A 107 1008 243 HOH HOH . I 5 HOH A 108 1009 246 HOH HOH . I 5 HOH A 109 1010 255 HOH HOH . I 5 HOH A 110 1011 263 HOH HOH . I 5 HOH A 111 1012 269 HOH HOH . I 5 HOH A 112 1013 270 HOH HOH . I 5 HOH A 113 1014 282 HOH HOH . I 5 HOH A 114 1015 287 HOH HOH . I 5 HOH A 115 1016 289 HOH HOH . I 5 HOH A 116 1017 291 HOH HOH . I 5 HOH A 117 1018 293 HOH HOH . J 5 HOH B 1 903 2 HOH HOH . J 5 HOH B 2 904 3 HOH HOH . J 5 HOH B 3 905 4 HOH HOH . J 5 HOH B 4 906 6 HOH HOH . J 5 HOH B 5 907 8 HOH HOH . J 5 HOH B 6 908 10 HOH HOH . J 5 HOH B 7 909 13 HOH HOH . J 5 HOH B 8 910 14 HOH HOH . J 5 HOH B 9 911 15 HOH HOH . J 5 HOH B 10 912 18 HOH HOH . J 5 HOH B 11 913 19 HOH HOH . J 5 HOH B 12 914 21 HOH HOH . J 5 HOH B 13 915 22 HOH HOH . J 5 HOH B 14 916 23 HOH HOH . J 5 HOH B 15 917 26 HOH HOH . J 5 HOH B 16 918 29 HOH HOH . J 5 HOH B 17 919 32 HOH HOH . J 5 HOH B 18 920 34 HOH HOH . J 5 HOH B 19 921 35 HOH HOH . J 5 HOH B 20 922 37 HOH HOH . J 5 HOH B 21 923 38 HOH HOH . J 5 HOH B 22 924 39 HOH HOH . J 5 HOH B 23 925 40 HOH HOH . J 5 HOH B 24 926 41 HOH HOH . J 5 HOH B 25 927 42 HOH HOH . J 5 HOH B 26 928 43 HOH HOH . J 5 HOH B 27 929 48 HOH HOH . J 5 HOH B 28 930 49 HOH HOH . J 5 HOH B 29 931 51 HOH HOH . J 5 HOH B 30 932 52 HOH HOH . J 5 HOH B 31 933 53 HOH HOH . J 5 HOH B 32 934 54 HOH HOH . J 5 HOH B 33 935 55 HOH HOH . J 5 HOH B 34 936 56 HOH HOH . J 5 HOH B 35 937 60 HOH HOH . J 5 HOH B 36 938 61 HOH HOH . J 5 HOH B 37 939 62 HOH HOH . J 5 HOH B 38 940 63 HOH HOH . J 5 HOH B 39 941 65 HOH HOH . J 5 HOH B 40 942 66 HOH HOH . J 5 HOH B 41 943 67 HOH HOH . J 5 HOH B 42 944 69 HOH HOH . J 5 HOH B 43 945 70 HOH HOH . J 5 HOH B 44 946 73 HOH HOH . J 5 HOH B 45 947 75 HOH HOH . J 5 HOH B 46 948 80 HOH HOH . J 5 HOH B 47 949 81 HOH HOH . J 5 HOH B 48 950 83 HOH HOH . J 5 HOH B 49 951 85 HOH HOH . J 5 HOH B 50 952 86 HOH HOH . J 5 HOH B 51 953 89 HOH HOH . J 5 HOH B 52 954 90 HOH HOH . J 5 HOH B 53 955 91 HOH HOH . J 5 HOH B 54 956 92 HOH HOH . J 5 HOH B 55 957 94 HOH HOH . J 5 HOH B 56 958 102 HOH HOH . J 5 HOH B 57 959 104 HOH HOH . J 5 HOH B 58 960 105 HOH HOH . J 5 HOH B 59 961 107 HOH HOH . J 5 HOH B 60 962 110 HOH HOH . J 5 HOH B 61 963 113 HOH HOH . J 5 HOH B 62 964 114 HOH HOH . J 5 HOH B 63 965 119 HOH HOH . J 5 HOH B 64 966 120 HOH HOH . J 5 HOH B 65 967 121 HOH HOH . J 5 HOH B 66 968 123 HOH HOH . J 5 HOH B 67 969 126 HOH HOH . J 5 HOH B 68 970 127 HOH HOH . J 5 HOH B 69 971 128 HOH HOH . J 5 HOH B 70 972 133 HOH HOH . J 5 HOH B 71 973 134 HOH HOH . J 5 HOH B 72 974 136 HOH HOH . J 5 HOH B 73 975 139 HOH HOH . J 5 HOH B 74 976 141 HOH HOH . J 5 HOH B 75 977 142 HOH HOH . J 5 HOH B 76 978 143 HOH HOH . J 5 HOH B 77 979 146 HOH HOH . J 5 HOH B 78 980 147 HOH HOH . J 5 HOH B 79 981 150 HOH HOH . J 5 HOH B 80 982 153 HOH HOH . J 5 HOH B 81 983 154 HOH HOH . J 5 HOH B 82 984 155 HOH HOH . J 5 HOH B 83 985 160 HOH HOH . J 5 HOH B 84 986 163 HOH HOH . J 5 HOH B 85 987 164 HOH HOH . J 5 HOH B 86 988 165 HOH HOH . J 5 HOH B 87 989 166 HOH HOH . J 5 HOH B 88 990 167 HOH HOH . J 5 HOH B 89 991 168 HOH HOH . J 5 HOH B 90 992 171 HOH HOH . J 5 HOH B 91 993 172 HOH HOH . J 5 HOH B 92 994 173 HOH HOH . J 5 HOH B 93 995 174 HOH HOH . J 5 HOH B 94 996 178 HOH HOH . J 5 HOH B 95 997 179 HOH HOH . J 5 HOH B 96 998 181 HOH HOH . J 5 HOH B 97 999 182 HOH HOH . J 5 HOH B 98 1000 184 HOH HOH . J 5 HOH B 99 1001 185 HOH HOH . J 5 HOH B 100 1002 187 HOH HOH . J 5 HOH B 101 1003 188 HOH HOH . J 5 HOH B 102 1004 189 HOH HOH . J 5 HOH B 103 1005 193 HOH HOH . J 5 HOH B 104 1006 196 HOH HOH . J 5 HOH B 105 1007 200 HOH HOH . J 5 HOH B 106 1008 202 HOH HOH . J 5 HOH B 107 1009 204 HOH HOH . J 5 HOH B 108 1010 205 HOH HOH . J 5 HOH B 109 1011 208 HOH HOH . J 5 HOH B 110 1012 210 HOH HOH . J 5 HOH B 111 1013 211 HOH HOH . J 5 HOH B 112 1014 213 HOH HOH . J 5 HOH B 113 1015 214 HOH HOH . J 5 HOH B 114 1016 215 HOH HOH . J 5 HOH B 115 1017 216 HOH HOH . J 5 HOH B 116 1018 217 HOH HOH . J 5 HOH B 117 1019 218 HOH HOH . J 5 HOH B 118 1020 220 HOH HOH . J 5 HOH B 119 1021 221 HOH HOH . J 5 HOH B 120 1022 222 HOH HOH . J 5 HOH B 121 1023 224 HOH HOH . J 5 HOH B 122 1024 225 HOH HOH . J 5 HOH B 123 1025 227 HOH HOH . J 5 HOH B 124 1026 228 HOH HOH . J 5 HOH B 125 1027 229 HOH HOH . J 5 HOH B 126 1028 231 HOH HOH . J 5 HOH B 127 1029 235 HOH HOH . J 5 HOH B 128 1030 236 HOH HOH . J 5 HOH B 129 1031 237 HOH HOH . J 5 HOH B 130 1032 238 HOH HOH . J 5 HOH B 131 1033 241 HOH HOH . J 5 HOH B 132 1034 242 HOH HOH . J 5 HOH B 133 1035 244 HOH HOH . J 5 HOH B 134 1036 245 HOH HOH . J 5 HOH B 135 1037 247 HOH HOH . J 5 HOH B 136 1038 252 HOH HOH . J 5 HOH B 137 1039 273 HOH HOH . J 5 HOH B 138 1040 275 HOH HOH . J 5 HOH B 139 1041 277 HOH HOH . J 5 HOH B 140 1042 278 HOH HOH . J 5 HOH B 141 1043 279 HOH HOH . J 5 HOH B 142 1044 288 HOH HOH . J 5 HOH B 143 1045 294 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 4 -13.042 11.12 13.261 1 31.77 ? C1 GOL 801 B 1 HETATM 2 O O1 GOL . . . H 4 -13.543 12.024 14.241 1 31.18 ? O1 GOL 801 B 1 HETATM 3 C C2 GOL . . . H 4 -13.45 9.686 13.594 1 31.51 ? C2 GOL 801 B 1 HETATM 4 O O2 GOL . . . H 4 -14.859 9.516 13.852 1 28.71 ? O2 GOL 801 B 1 HETATM 5 C C3 GOL . . . H 4 -12.603 9.309 14.799 1 32.89 ? C3 GOL 801 B 1 HETATM 6 O O3 GOL . . . H 4 -11.363 8.768 14.299 1 28.63 ? O3 GOL 801 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #