data_1X07
#
_model_server_result.job_id            gNC5geeBh1xNdpJAMQB3BQ 
_model_server_result.datetime_utc      '2024-11-02 21:30:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1x07 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":901}' 
#
_entry.id    1X07 
#
_exptl.entry_id    1X07 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              246.092 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1X07 
_cell.length_a            57.792 
_cell.length_b            57.792 
_cell.length_c            119.131 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1X07 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 39.710333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 26 A ASP 26 1_555 C MG MG . A MG 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
metalc ? metalc2 E O HOH . A HOH 694 1_555 C MG MG . A MG 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc3 E O HOH . A HOH 695 1_555 C MG MG . A MG 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc4 E O HOH . A HOH 696 1_555 C MG MG . A MG 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.892 ? 
metalc ? metalc5 C MG MG . A MG 900 1_555 D O2B IPE . A IPE 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
metalc ? metalc6 C MG MG . A MG 900 1_555 D O2A IPE . A IPE 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
#
_chem_comp.formula           'C5 H12 O7 P2' 
_chem_comp.formula_weight    246.092 
_chem_comp.id                IPE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ISOPENTENYL PYROPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 IPE sing 173 n n 
C1 C2 IPE sing 174 n n 
C1 H11 IPE sing 175 n n 
C1 H12 IPE sing 176 n n 
O1 PA IPE sing 177 n n 
C2 C3 IPE sing 178 n n 
C2 H21 IPE sing 179 n n 
C2 H22 IPE sing 180 n n 
C3 C4 IPE doub 181 n n 
C3 C5 IPE sing 182 n n 
C4 H41 IPE sing 183 n n 
C4 H42 IPE sing 184 n n 
C5 H51 IPE sing 185 n n 
C5 H52 IPE sing 186 n n 
C5 H53 IPE sing 187 n n 
PA O1A IPE doub 188 n n 
PA O2A IPE sing 189 n n 
PA O3A IPE sing 190 n n 
O2A H2A IPE sing 191 n n 
O3A PB IPE sing 192 n n 
PB O1B IPE sing 193 n n 
PB O2B IPE doub 194 n n 
PB O3B IPE sing 195 n n 
O1B H1B IPE sing 196 n n 
O3B H3B IPE sing 197 n n 
#
_atom_sites.entry_id                     1X07 
_atom_sites.fract_transf_matrix[1][1]    0.017303 
_atom_sites.fract_transf_matrix[1][2]    0.00999 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01998 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008394 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 902 902 PO4 PO4 . 
C 3 MG A 1 900 900 MG MGW . 
D 4 IPE A 1 901 901 IPE IPP . 
E 5 HOH A 1 501 501 HOH TIP . 
E 5 HOH A 2 502 502 HOH TIP . 
E 5 HOH A 3 503 503 HOH TIP . 
E 5 HOH A 4 504 504 HOH TIP . 
E 5 HOH A 5 505 505 HOH TIP . 
E 5 HOH A 6 506 506 HOH TIP . 
E 5 HOH A 7 507 507 HOH TIP . 
E 5 HOH A 8 508 508 HOH TIP . 
E 5 HOH A 9 509 509 HOH TIP . 
E 5 HOH A 10 510 510 HOH TIP . 
E 5 HOH A 11 511 511 HOH TIP . 
E 5 HOH A 12 512 512 HOH TIP . 
E 5 HOH A 13 513 513 HOH TIP . 
E 5 HOH A 14 514 514 HOH TIP . 
E 5 HOH A 15 515 515 HOH TIP . 
E 5 HOH A 16 516 516 HOH TIP . 
E 5 HOH A 17 517 517 HOH TIP . 
E 5 HOH A 18 518 518 HOH TIP . 
E 5 HOH A 19 519 519 HOH TIP . 
E 5 HOH A 20 520 520 HOH TIP . 
E 5 HOH A 21 521 521 HOH TIP . 
E 5 HOH A 22 522 522 HOH TIP . 
E 5 HOH A 23 523 523 HOH TIP . 
E 5 HOH A 24 524 524 HOH TIP . 
E 5 HOH A 25 525 525 HOH TIP . 
E 5 HOH A 26 526 526 HOH TIP . 
E 5 HOH A 27 527 527 HOH TIP . 
E 5 HOH A 28 528 528 HOH TIP . 
E 5 HOH A 29 529 529 HOH TIP . 
E 5 HOH A 30 530 530 HOH TIP . 
E 5 HOH A 31 531 531 HOH TIP . 
E 5 HOH A 32 532 532 HOH TIP . 
E 5 HOH A 33 533 533 HOH TIP . 
E 5 HOH A 34 534 534 HOH TIP . 
E 5 HOH A 35 535 535 HOH TIP . 
E 5 HOH A 36 536 536 HOH TIP . 
E 5 HOH A 37 537 537 HOH TIP . 
E 5 HOH A 38 538 538 HOH TIP . 
E 5 HOH A 39 539 539 HOH TIP . 
E 5 HOH A 40 540 540 HOH TIP . 
E 5 HOH A 41 541 541 HOH TIP . 
E 5 HOH A 42 542 542 HOH TIP . 
E 5 HOH A 43 543 543 HOH TIP . 
E 5 HOH A 44 544 544 HOH TIP . 
E 5 HOH A 45 545 545 HOH TIP . 
E 5 HOH A 46 546 546 HOH TIP . 
E 5 HOH A 47 547 547 HOH TIP . 
E 5 HOH A 48 548 548 HOH TIP . 
E 5 HOH A 49 549 549 HOH TIP . 
E 5 HOH A 50 550 550 HOH TIP . 
E 5 HOH A 51 551 551 HOH TIP . 
E 5 HOH A 52 552 552 HOH TIP . 
E 5 HOH A 53 553 553 HOH TIP . 
E 5 HOH A 54 554 554 HOH TIP . 
E 5 HOH A 55 555 555 HOH TIP . 
E 5 HOH A 56 556 556 HOH TIP . 
E 5 HOH A 57 557 557 HOH TIP . 
E 5 HOH A 58 558 558 HOH TIP . 
E 5 HOH A 59 559 559 HOH TIP . 
E 5 HOH A 60 560 560 HOH TIP . 
E 5 HOH A 61 561 561 HOH TIP . 
E 5 HOH A 62 562 562 HOH TIP . 
E 5 HOH A 63 563 563 HOH TIP . 
E 5 HOH A 64 564 564 HOH TIP . 
E 5 HOH A 65 565 565 HOH TIP . 
E 5 HOH A 66 566 566 HOH TIP . 
E 5 HOH A 67 567 567 HOH TIP . 
E 5 HOH A 68 568 568 HOH TIP . 
E 5 HOH A 69 569 569 HOH TIP . 
E 5 HOH A 70 570 570 HOH TIP . 
E 5 HOH A 71 571 571 HOH TIP . 
E 5 HOH A 72 572 572 HOH TIP . 
E 5 HOH A 73 573 573 HOH TIP . 
E 5 HOH A 74 574 574 HOH TIP . 
E 5 HOH A 75 575 575 HOH TIP . 
E 5 HOH A 76 576 576 HOH TIP . 
E 5 HOH A 77 577 577 HOH TIP . 
E 5 HOH A 78 578 578 HOH TIP . 
E 5 HOH A 79 579 579 HOH TIP . 
E 5 HOH A 80 580 580 HOH TIP . 
E 5 HOH A 81 581 581 HOH TIP . 
E 5 HOH A 82 582 582 HOH TIP . 
E 5 HOH A 83 583 583 HOH TIP . 
E 5 HOH A 84 584 584 HOH TIP . 
E 5 HOH A 85 585 585 HOH TIP . 
E 5 HOH A 86 586 586 HOH TIP . 
E 5 HOH A 87 587 587 HOH TIP . 
E 5 HOH A 88 588 588 HOH TIP . 
E 5 HOH A 89 589 589 HOH TIP . 
E 5 HOH A 90 590 590 HOH TIP . 
E 5 HOH A 91 591 591 HOH TIP . 
E 5 HOH A 92 592 592 HOH TIP . 
E 5 HOH A 93 593 593 HOH TIP . 
E 5 HOH A 94 594 594 HOH TIP . 
E 5 HOH A 95 595 595 HOH TIP . 
E 5 HOH A 96 596 596 HOH TIP . 
E 5 HOH A 97 597 597 HOH TIP . 
E 5 HOH A 98 598 598 HOH TIP . 
E 5 HOH A 99 599 599 HOH TIP . 
E 5 HOH A 100 600 600 HOH TIP . 
E 5 HOH A 101 601 601 HOH TIP . 
E 5 HOH A 102 602 602 HOH TIP . 
E 5 HOH A 103 603 603 HOH TIP . 
E 5 HOH A 104 604 604 HOH TIP . 
E 5 HOH A 105 605 605 HOH TIP . 
E 5 HOH A 106 606 606 HOH TIP . 
E 5 HOH A 107 607 607 HOH TIP . 
E 5 HOH A 108 608 608 HOH TIP . 
E 5 HOH A 109 609 609 HOH TIP . 
E 5 HOH A 110 610 610 HOH TIP . 
E 5 HOH A 111 611 611 HOH TIP . 
E 5 HOH A 112 612 612 HOH TIP . 
E 5 HOH A 113 613 613 HOH TIP . 
E 5 HOH A 114 614 614 HOH TIP . 
E 5 HOH A 115 615 615 HOH TIP . 
E 5 HOH A 116 616 616 HOH TIP . 
E 5 HOH A 117 617 617 HOH TIP . 
E 5 HOH A 118 618 618 HOH TIP . 
E 5 HOH A 119 619 619 HOH TIP . 
E 5 HOH A 120 620 620 HOH TIP . 
E 5 HOH A 121 621 621 HOH TIP . 
E 5 HOH A 122 622 622 HOH TIP . 
E 5 HOH A 123 623 623 HOH TIP . 
E 5 HOH A 124 624 624 HOH TIP . 
E 5 HOH A 125 625 625 HOH TIP . 
E 5 HOH A 126 626 626 HOH TIP . 
E 5 HOH A 127 627 627 HOH TIP . 
E 5 HOH A 128 628 628 HOH TIP . 
E 5 HOH A 129 629 629 HOH TIP . 
E 5 HOH A 130 630 630 HOH TIP . 
E 5 HOH A 131 631 631 HOH TIP . 
E 5 HOH A 132 632 632 HOH TIP . 
E 5 HOH A 133 633 633 HOH TIP . 
E 5 HOH A 134 634 634 HOH TIP . 
E 5 HOH A 135 635 635 HOH TIP . 
E 5 HOH A 136 636 636 HOH TIP . 
E 5 HOH A 137 637 637 HOH TIP . 
E 5 HOH A 138 638 638 HOH TIP . 
E 5 HOH A 139 639 639 HOH TIP . 
E 5 HOH A 140 640 640 HOH TIP . 
E 5 HOH A 141 641 641 HOH TIP . 
E 5 HOH A 142 642 642 HOH TIP . 
E 5 HOH A 143 643 643 HOH TIP . 
E 5 HOH A 144 644 644 HOH TIP . 
E 5 HOH A 145 645 645 HOH TIP . 
E 5 HOH A 146 646 646 HOH TIP . 
E 5 HOH A 147 647 647 HOH TIP . 
E 5 HOH A 148 648 648 HOH TIP . 
E 5 HOH A 149 649 649 HOH TIP . 
E 5 HOH A 150 650 650 HOH TIP . 
E 5 HOH A 151 651 651 HOH TIP . 
E 5 HOH A 152 652 652 HOH TIP . 
E 5 HOH A 153 653 653 HOH TIP . 
E 5 HOH A 154 654 654 HOH TIP . 
E 5 HOH A 155 655 655 HOH TIP . 
E 5 HOH A 156 656 656 HOH TIP . 
E 5 HOH A 157 657 657 HOH TIP . 
E 5 HOH A 158 658 658 HOH TIP . 
E 5 HOH A 159 659 659 HOH TIP . 
E 5 HOH A 160 660 660 HOH TIP . 
E 5 HOH A 161 661 661 HOH TIP . 
E 5 HOH A 162 662 662 HOH TIP . 
E 5 HOH A 163 663 663 HOH TIP . 
E 5 HOH A 164 664 664 HOH TIP . 
E 5 HOH A 165 665 665 HOH TIP . 
E 5 HOH A 166 666 666 HOH TIP . 
E 5 HOH A 167 667 667 HOH TIP . 
E 5 HOH A 168 668 668 HOH TIP . 
E 5 HOH A 169 669 669 HOH TIP . 
E 5 HOH A 170 670 670 HOH TIP . 
E 5 HOH A 171 671 671 HOH TIP . 
E 5 HOH A 172 672 672 HOH TIP . 
E 5 HOH A 173 673 673 HOH TIP . 
E 5 HOH A 174 674 674 HOH TIP . 
E 5 HOH A 175 675 675 HOH TIP . 
E 5 HOH A 176 676 676 HOH TIP . 
E 5 HOH A 177 677 677 HOH TIP . 
E 5 HOH A 178 678 678 HOH TIP . 
E 5 HOH A 179 679 679 HOH TIP . 
E 5 HOH A 180 680 680 HOH TIP . 
E 5 HOH A 181 681 681 HOH TIP . 
E 5 HOH A 182 682 682 HOH TIP . 
E 5 HOH A 183 683 683 HOH TIP . 
E 5 HOH A 184 684 684 HOH TIP . 
E 5 HOH A 185 685 685 HOH TIP . 
E 5 HOH A 186 686 686 HOH TIP . 
E 5 HOH A 187 687 687 HOH TIP . 
E 5 HOH A 188 688 688 HOH TIP . 
E 5 HOH A 189 689 689 HOH TIP . 
E 5 HOH A 190 690 690 HOH TIP . 
E 5 HOH A 191 691 691 HOH TIP . 
E 5 HOH A 192 692 692 HOH TIP . 
E 5 HOH A 193 693 693 HOH TIP . 
E 5 HOH A 194 694 900 HOH MGW . 
E 5 HOH A 195 695 900 HOH MGW . 
E 5 HOH A 196 696 900 HOH MGW . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 IPE . . . D 4 20.688 17.321 23.316 1 41.45 ? C1 IPE 901 A 1 
HETATM 2 O O1 IPE . . . D 4 19.531 17.808 22.613 1 40.04 ? O1 IPE 901 A 1 
HETATM 3 C C2 IPE . . . D 4 21.997 18.075 23.1 1 42.62 ? C2 IPE 901 A 1 
HETATM 4 C C3 IPE . . . D 4 23.176 17.763 23.686 1 43.83 ? C3 IPE 901 A 1 
HETATM 5 C C4 IPE . . . D 4 23.295 16.572 24.663 1 44.85 ? C4 IPE 901 A 1 
HETATM 6 C C5 IPE . . . D 4 24.39 18.618 23.359 1 42.82 ? C5 IPE 901 A 1 
HETATM 7 P PA IPE . . . D 4 19.588 18.525 21.133 1 36.59 ? PA IPE 901 A 1 
HETATM 8 O O1A IPE . . . D 4 20.196 19.918 21.331 1 39.02 ? O1A IPE 901 A 1 
HETATM 9 O O2A IPE . . . D 4 20.33 17.455 20.255 1 34.29 ? O2A IPE 901 A 1 
HETATM 10 O O3A IPE . . . D 4 18.298 18.979 20.415 1 37.78 ? O3A IPE 901 A 1 
HETATM 11 P PB IPE . . . D 4 17.507 18.142 19.358 1 33.01 ? PB IPE 901 A 1 
HETATM 12 O O1B IPE . . . D 4 16.091 18.012 19.496 1 31.92 ? O1B IPE 901 A 1 
HETATM 13 O O2B IPE . . . D 4 18.162 16.79 19.061 1 31.61 ? O2B IPE 901 A 1 
HETATM 14 O O3B IPE . . . D 4 17.509 18.873 17.985 1 39.04 ? O3B IPE 901 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#