data_1X0I # _model_server_result.job_id mKM8bNv8Ly-HpWp7PXQu2w _model_server_result.datetime_utc '2024-11-27 17:02:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1x0i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":250}' # _entry.id 1X0I # _exptl.entry_id 1X0I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1X0I _cell.length_a 102.64 _cell.length_b 102.64 _cell.length_c 109.04 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1X0I _symmetry.cell_setting ? _symmetry.Int_Tables_number 177 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 102.64 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 51.32 88.888847 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id 1 _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id 1 _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 250 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.356 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 528 n n C1 C6 RET sing 529 n n C1 C16 RET sing 530 n n C1 C17 RET sing 531 n n C2 C3 RET sing 532 n n C2 H21 RET sing 533 n n C2 H22 RET sing 534 n n C3 C4 RET sing 535 n n C3 H31 RET sing 536 n n C3 H32 RET sing 537 n n C4 C5 RET sing 538 n n C4 H41 RET sing 539 n n C4 H42 RET sing 540 n n C5 C6 RET doub 541 n n C5 C18 RET sing 542 n n C6 C7 RET sing 543 n n C7 C8 RET doub 544 e n C7 H7 RET sing 545 n n C8 C9 RET sing 546 n n C8 H8 RET sing 547 n n C9 C10 RET doub 548 e n C9 C19 RET sing 549 n n C10 C11 RET sing 550 n n C10 H10 RET sing 551 n n C11 C12 RET doub 552 e n C11 H11 RET sing 553 n n C12 C13 RET sing 554 n n C12 H12 RET sing 555 n n C13 C14 RET doub 556 e n C13 C20 RET sing 557 n n C14 C15 RET sing 558 n n C14 H14 RET sing 559 n n C15 O1 RET doub 560 n n C15 H15 RET sing 561 n n C16 H161 RET sing 562 n n C16 H162 RET sing 563 n n C16 H163 RET sing 564 n n C17 H171 RET sing 565 n n C17 H172 RET sing 566 n n C17 H173 RET sing 567 n n C18 H181 RET sing 568 n n C18 H182 RET sing 569 n n C18 H183 RET sing 570 n n C19 H191 RET sing 571 n n C19 H192 RET sing 572 n n C19 H193 RET sing 573 n n C20 H201 RET sing 574 n n C20 H202 RET sing 575 n n C20 H203 RET sing 576 n n # _atom_sites.entry_id 1X0I _atom_sites.fract_transf_matrix[1][1] 0.009743 _atom_sites.fract_transf_matrix[1][2] 0.005625 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01125 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009171 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 1 700 700 SO4 SO4 . C 3 RET 1 1 250 250 RET RET . D 4 L3P 1 1 260 260 L3P L3P . E 5 L2P 1 1 270 270 L2P L2P . F 4 L3P 1 1 280 280 L3P L3P . G 4 L3P 1 1 290 290 L3P L3P . H 6 HOH 1 1 601 601 HOH HOH . H 6 HOH 1 2 602 602 HOH HOH . H 6 HOH 1 3 603 603 HOH HOH . H 6 HOH 1 4 605 605 HOH HOH . H 6 HOH 1 5 606 606 HOH HOH . H 6 HOH 1 6 607 607 HOH HOH . H 6 HOH 1 7 608 608 HOH HOH . H 6 HOH 1 8 609 609 HOH HOH . H 6 HOH 1 9 610 610 HOH HOH . H 6 HOH 1 10 611 611 HOH HOH . H 6 HOH 1 11 612 612 HOH HOH . H 6 HOH 1 12 613 613 HOH HOH . H 6 HOH 1 13 621 621 HOH HOH . H 6 HOH 1 14 622 622 HOH HOH . H 6 HOH 1 15 623 623 HOH HOH . H 6 HOH 1 16 624 624 HOH HOH . H 6 HOH 1 17 625 625 HOH HOH . H 6 HOH 1 18 626 626 HOH HOH . H 6 HOH 1 19 627 627 HOH HOH . H 6 HOH 1 20 628 628 HOH HOH . H 6 HOH 1 21 631 631 HOH HOH . H 6 HOH 1 22 632 632 HOH HOH . H 6 HOH 1 23 633 633 HOH HOH . H 6 HOH 1 24 634 634 HOH HOH . H 6 HOH 1 25 635 635 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . C 3 38.876 15.565 19.651 0.5 31.2 ? C1 RET 250 1 1 HETATM 2 C C2 RET . . . C 3 39.441 14.688 18.439 0.5 31.85 ? C2 RET 250 1 1 HETATM 3 C C3 RET . . . C 3 39.344 13.231 18.547 0.5 31.39 ? C3 RET 250 1 1 HETATM 4 C C4 RET . . . C 3 39.858 12.701 19.871 0.5 30.17 ? C4 RET 250 1 1 HETATM 5 C C5 RET . . . C 3 39.368 13.443 21.114 0.5 30.28 ? C5 RET 250 1 1 HETATM 6 C C6 RET . . . C 3 38.88 14.789 21.075 0.5 30.64 ? C6 RET 250 1 1 HETATM 7 C C7 RET . . . C 3 38.396 15.389 22.423 0.5 29.82 ? C7 RET 250 1 1 HETATM 8 C C8 RET . . . C 3 37.915 16.611 22.729 0.5 30.52 ? C8 RET 250 1 1 HETATM 9 C C9 RET . . . C 3 37.358 17.07 24 0.5 30.02 ? C9 RET 250 1 1 HETATM 10 C C10 RET . . . C 3 36.95 18.378 24.002 0.5 29.42 ? C10 RET 250 1 1 HETATM 11 C C11 RET . . . C 3 36.306 19.174 25.02 0.5 28.83 ? C11 RET 250 1 1 HETATM 12 C C12 RET . . . C 3 35.982 20.443 24.708 0.5 28.92 ? C12 RET 250 1 1 HETATM 13 C C13 RET . . . C 3 35.285 21.443 25.557 0.5 25.72 ? C13 RET 250 1 1 HETATM 14 C C14 RET . . . C 3 35.161 22.731 25.074 0.5 26.29 ? C14 RET 250 1 1 HETATM 15 C C15 RET . . . C 3 34.728 23.953 25.781 0.5 26.91 ? C15 RET 250 1 1 HETATM 16 C C16 RET . . . C 3 39.762 16.82 19.726 0.5 31.06 ? C16 RET 250 1 1 HETATM 17 C C17 RET . . . C 3 37.456 15.991 19.243 0.5 31.48 ? C17 RET 250 1 1 HETATM 18 C C18 RET . . . C 3 39.428 12.605 22.385 0.5 29.29 ? C18 RET 250 1 1 HETATM 19 C C19 RET . . . C 3 37.186 16.126 25.176 0.5 25.85 ? C19 RET 250 1 1 HETATM 20 C C20 RET . . . C 3 34.843 21.049 26.947 0.5 23.85 ? C20 RET 250 1 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 648 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 20 #