data_1X1A # _model_server_result.job_id -2rJLcGTO2SjWsL6AZzBXA _model_server_result.datetime_utc '2024-11-18 05:38:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1x1a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":4264}' # _entry.id 1X1A # _exptl.entry_id 1X1A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1X1A _cell.length_a 81.367 _cell.length_b 81.367 _cell.length_c 251.616 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1X1A _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_555 -x+y,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 125.808 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 290 n n N HN1 SAM sing 291 n n N HN2 SAM sing 292 n n CA C SAM sing 293 n n CA CB SAM sing 294 n n CA HA SAM sing 295 n n C O SAM doub 296 n n C OXT SAM sing 297 n n CB CG SAM sing 298 n n CB HB1 SAM sing 299 n n CB HB2 SAM sing 300 n n CG SD SAM sing 301 n n CG HG1 SAM sing 302 n n CG HG2 SAM sing 303 n n SD CE SAM sing 304 n n SD C5' SAM sing 305 n n CE HE1 SAM sing 306 n n CE HE2 SAM sing 307 n n CE HE3 SAM sing 308 n n C5' C4' SAM sing 309 n n C5' "H5'1" SAM sing 310 n n C5' "H5'2" SAM sing 311 n n C4' O4' SAM sing 312 n n C4' C3' SAM sing 313 n n C4' H4' SAM sing 314 n n O4' C1' SAM sing 315 n n C3' O3' SAM sing 316 n n C3' C2' SAM sing 317 n n C3' H3' SAM sing 318 n n O3' HO3' SAM sing 319 n n C2' O2' SAM sing 320 n n C2' C1' SAM sing 321 n n C2' H2' SAM sing 322 n n O2' HO2' SAM sing 323 n n C1' N9 SAM sing 324 n n C1' H1' SAM sing 325 n n N9 C8 SAM sing 326 n y N9 C4 SAM sing 327 n y C8 N7 SAM doub 328 n y C8 H8 SAM sing 329 n n N7 C5 SAM sing 330 n y C5 C6 SAM sing 331 n y C5 C4 SAM doub 332 n y C6 N6 SAM sing 333 n n C6 N1 SAM doub 334 n y N6 HN61 SAM sing 335 n n N6 HN62 SAM sing 336 n n N1 C2 SAM sing 337 n y C2 N3 SAM doub 338 n y C2 H2 SAM sing 339 n n N3 C4 SAM sing 340 n y # _atom_sites.entry_id 1X1A _atom_sites.fract_transf_matrix[1][1] 0.01229 _atom_sites.fract_transf_matrix[1][2] 0.007096 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014191 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003974 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 4396 4396 SO4 SO4 . C 3 SAM A 1 4264 4264 SAM SAM . D 4 GOL A 1 2431 2431 GOL GOL . E 5 HOH A 1 4397 1 HOH HOH . E 5 HOH A 2 4398 2 HOH HOH . E 5 HOH A 3 4399 3 HOH HOH . E 5 HOH A 4 4400 4 HOH HOH . E 5 HOH A 5 4401 5 HOH HOH . E 5 HOH A 6 4402 6 HOH HOH . E 5 HOH A 7 4403 7 HOH HOH . E 5 HOH A 8 4404 8 HOH HOH . E 5 HOH A 9 4405 9 HOH HOH . E 5 HOH A 10 4406 10 HOH HOH . E 5 HOH A 11 4407 11 HOH HOH . E 5 HOH A 12 4408 12 HOH HOH . E 5 HOH A 13 4409 13 HOH HOH . E 5 HOH A 14 4410 14 HOH HOH . E 5 HOH A 15 4411 15 HOH HOH . E 5 HOH A 16 4412 16 HOH HOH . E 5 HOH A 17 4413 17 HOH HOH . E 5 HOH A 18 4414 18 HOH HOH . E 5 HOH A 19 4415 19 HOH HOH . E 5 HOH A 20 4416 20 HOH HOH . E 5 HOH A 21 4417 21 HOH HOH . E 5 HOH A 22 4418 22 HOH HOH . E 5 HOH A 23 4419 23 HOH HOH . E 5 HOH A 24 4420 24 HOH HOH . E 5 HOH A 25 4421 25 HOH HOH . E 5 HOH A 26 4422 26 HOH HOH . E 5 HOH A 27 4423 27 HOH HOH . E 5 HOH A 28 4424 28 HOH HOH . E 5 HOH A 29 4425 29 HOH HOH . E 5 HOH A 30 4426 30 HOH HOH . E 5 HOH A 31 4427 31 HOH HOH . E 5 HOH A 32 4428 32 HOH HOH . E 5 HOH A 33 4429 33 HOH HOH . E 5 HOH A 34 4430 34 HOH HOH . E 5 HOH A 35 4431 35 HOH HOH . E 5 HOH A 36 4432 36 HOH HOH . E 5 HOH A 37 4433 37 HOH HOH . E 5 HOH A 38 4434 38 HOH HOH . E 5 HOH A 39 4435 39 HOH HOH . E 5 HOH A 40 4436 40 HOH HOH . E 5 HOH A 41 4437 41 HOH HOH . E 5 HOH A 42 4438 42 HOH HOH . E 5 HOH A 43 4439 43 HOH HOH . E 5 HOH A 44 4440 44 HOH HOH . E 5 HOH A 45 4441 45 HOH HOH . E 5 HOH A 46 4442 46 HOH HOH . E 5 HOH A 47 4443 47 HOH HOH . E 5 HOH A 48 4444 48 HOH HOH . E 5 HOH A 49 4445 49 HOH HOH . E 5 HOH A 50 4446 50 HOH HOH . E 5 HOH A 51 4447 51 HOH HOH . E 5 HOH A 52 4448 52 HOH HOH . E 5 HOH A 53 4449 53 HOH HOH . E 5 HOH A 54 4450 54 HOH HOH . E 5 HOH A 55 4451 55 HOH HOH . E 5 HOH A 56 4452 56 HOH HOH . E 5 HOH A 57 4453 57 HOH HOH . E 5 HOH A 58 4454 58 HOH HOH . E 5 HOH A 59 4455 59 HOH HOH . E 5 HOH A 60 4456 60 HOH HOH . E 5 HOH A 61 4457 61 HOH HOH . E 5 HOH A 62 4458 62 HOH HOH . E 5 HOH A 63 4459 63 HOH HOH . E 5 HOH A 64 4460 64 HOH HOH . E 5 HOH A 65 4461 65 HOH HOH . E 5 HOH A 66 4462 66 HOH HOH . E 5 HOH A 67 4463 67 HOH HOH . E 5 HOH A 68 4464 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . C 3 5.276 55.328 36.65 1 59.49 ? N SAM 4264 A 1 HETATM 2 C CA SAM . . . C 3 4.057 54.932 37.424 1 68.48 ? CA SAM 4264 A 1 HETATM 3 C C SAM . . . C 3 3.541 56.102 38.245 1 71.6 ? C SAM 4264 A 1 HETATM 4 O O SAM . . . C 3 4.16 57.182 38.207 1 74.75 ? O SAM 4264 A 1 HETATM 5 O OXT SAM . . . C 3 2.477 55.853 38.938 1 68.31 ? OXT SAM 4264 A 1 HETATM 6 C CB SAM . . . C 3 4.384 53.794 38.405 1 69.62 ? CB SAM 4264 A 1 HETATM 7 C CG SAM . . . C 3 5.549 52.993 37.966 1 65.03 ? CG SAM 4264 A 1 HETATM 8 S SD SAM . . . C 3 6.07 51.62 39.03 1 59.96 ? SD SAM 4264 A 1 HETATM 9 C CE SAM . . . C 3 6.764 52.336 40.525 1 71.82 ? CE SAM 4264 A 1 HETATM 10 C C5' SAM . . . C 3 7.405 50.923 38.158 1 60.26 ? C5' SAM 4264 A 1 HETATM 11 C C4' SAM . . . C 3 6.966 50.277 36.862 1 53.98 ? C4' SAM 4264 A 1 HETATM 12 O O4' SAM . . . C 3 8.125 49.739 36.23 1 54.29 ? O4' SAM 4264 A 1 HETATM 13 C C3' SAM . . . C 3 6.01 49.108 37.116 1 61.77 ? C3' SAM 4264 A 1 HETATM 14 O O3' SAM . . . C 3 4.81 49.481 36.391 1 62.58 ? O3' SAM 4264 A 1 HETATM 15 C C2' SAM . . . C 3 6.586 47.89 36.46 1 58.4 ? C2' SAM 4264 A 1 HETATM 16 O O2' SAM . . . C 3 5.758 47.015 35.695 1 61.43 ? O2' SAM 4264 A 1 HETATM 17 C C1' SAM . . . C 3 7.855 48.454 35.746 1 60.8 ? C1' SAM 4264 A 1 HETATM 18 N N9 SAM . . . C 3 9.031 47.61 35.914 1 60.17 ? N9 SAM 4264 A 1 HETATM 19 C C8 SAM . . . C 3 9.562 47.033 37.051 1 53.63 ? C8 SAM 4264 A 1 HETATM 20 N N7 SAM . . . C 3 10.631 46.329 36.823 1 57.53 ? N7 SAM 4264 A 1 HETATM 21 C C5 SAM . . . C 3 10.825 46.449 35.446 1 57.59 ? C5 SAM 4264 A 1 HETATM 22 C C6 SAM . . . C 3 11.8 45.924 34.559 1 58.79 ? C6 SAM 4264 A 1 HETATM 23 N N6 SAM . . . C 3 12.813 45.135 34.992 1 62.92 ? N6 SAM 4264 A 1 HETATM 24 N N1 SAM . . . C 3 11.719 46.234 33.207 1 67.03 ? N1 SAM 4264 A 1 HETATM 25 C C2 SAM . . . C 3 10.697 47.026 32.784 1 54.87 ? C2 SAM 4264 A 1 HETATM 26 N N3 SAM . . . C 3 9.726 47.567 33.537 1 50.13 ? N3 SAM 4264 A 1 HETATM 27 C C4 SAM . . . C 3 9.846 47.233 34.872 1 55.25 ? C4 SAM 4264 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #