data_1X1B # _model_server_result.job_id XYcKYTpwoVIwl2QSITrfRQ _model_server_result.datetime_utc '2024-12-14 05:55:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1x1b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":4261}' # _entry.id 1X1B # _exptl.entry_id 1X1B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1X1B _cell.length_a 81.207 _cell.length_b 81.207 _cell.length_c 251.025 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1X1B _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_554 x,x-y,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 -41.8375 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 290 n n N HN1 SAH sing 291 n n N HN2 SAH sing 292 n n CA CB SAH sing 293 n n CA C SAH sing 294 n n CA HA SAH sing 295 n n CB CG SAH sing 296 n n CB HB1 SAH sing 297 n n CB HB2 SAH sing 298 n n CG SD SAH sing 299 n n CG HG1 SAH sing 300 n n CG HG2 SAH sing 301 n n SD C5' SAH sing 302 n n C O SAH doub 303 n n C OXT SAH sing 304 n n OXT HXT SAH sing 305 n n C5' C4' SAH sing 306 n n C5' "H5'1" SAH sing 307 n n C5' "H5'2" SAH sing 308 n n C4' O4' SAH sing 309 n n C4' C3' SAH sing 310 n n C4' H4' SAH sing 311 n n O4' C1' SAH sing 312 n n C3' O3' SAH sing 313 n n C3' C2' SAH sing 314 n n C3' H3' SAH sing 315 n n O3' HO3' SAH sing 316 n n C2' O2' SAH sing 317 n n C2' C1' SAH sing 318 n n C2' H2' SAH sing 319 n n O2' HO2' SAH sing 320 n n C1' N9 SAH sing 321 n n C1' H1' SAH sing 322 n n N9 C8 SAH sing 323 n y N9 C4 SAH sing 324 n y C8 N7 SAH doub 325 n y C8 H8 SAH sing 326 n n N7 C5 SAH sing 327 n y C5 C6 SAH sing 328 n y C5 C4 SAH doub 329 n y C6 N6 SAH sing 330 n n C6 N1 SAH doub 331 n y N6 HN61 SAH sing 332 n n N6 HN62 SAH sing 333 n n N1 C2 SAH sing 334 n y C2 N3 SAH doub 335 n y C2 H2 SAH sing 336 n n N3 C4 SAH sing 337 n y # _atom_sites.entry_id 1X1B _atom_sites.fract_transf_matrix[1][1] 0.012314 _atom_sites.fract_transf_matrix[1][2] 0.00711 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014219 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003984 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 4396 4396 SO4 SO4 . C 3 SAH A 1 4261 4261 SAH SAH . D 4 GOL A 1 2431 2431 GOL GOL . E 5 HOH A 1 4397 1 HOH HOH . E 5 HOH A 2 4398 2 HOH HOH . E 5 HOH A 3 4399 3 HOH HOH . E 5 HOH A 4 4400 4 HOH HOH . E 5 HOH A 5 4401 5 HOH HOH . E 5 HOH A 6 4402 6 HOH HOH . E 5 HOH A 7 4403 7 HOH HOH . E 5 HOH A 8 4404 8 HOH HOH . E 5 HOH A 9 4405 9 HOH HOH . E 5 HOH A 10 4406 10 HOH HOH . E 5 HOH A 11 4407 11 HOH HOH . E 5 HOH A 12 4408 12 HOH HOH . E 5 HOH A 13 4409 13 HOH HOH . E 5 HOH A 14 4410 14 HOH HOH . E 5 HOH A 15 4411 15 HOH HOH . E 5 HOH A 16 4412 16 HOH HOH . E 5 HOH A 17 4413 17 HOH HOH . E 5 HOH A 18 4414 18 HOH HOH . E 5 HOH A 19 4415 19 HOH HOH . E 5 HOH A 20 4416 20 HOH HOH . E 5 HOH A 21 4417 21 HOH HOH . E 5 HOH A 22 4418 22 HOH HOH . E 5 HOH A 23 4419 23 HOH HOH . E 5 HOH A 24 4420 24 HOH HOH . E 5 HOH A 25 4421 25 HOH HOH . E 5 HOH A 26 4422 26 HOH HOH . E 5 HOH A 27 4423 27 HOH HOH . E 5 HOH A 28 4424 28 HOH HOH . E 5 HOH A 29 4425 29 HOH HOH . E 5 HOH A 30 4426 30 HOH HOH . E 5 HOH A 31 4427 31 HOH HOH . E 5 HOH A 32 4428 32 HOH HOH . E 5 HOH A 33 4429 33 HOH HOH . E 5 HOH A 34 4430 34 HOH HOH . E 5 HOH A 35 4431 35 HOH HOH . E 5 HOH A 36 4432 36 HOH HOH . E 5 HOH A 37 4433 37 HOH HOH . E 5 HOH A 38 4434 38 HOH HOH . E 5 HOH A 39 4435 39 HOH HOH . E 5 HOH A 40 4436 40 HOH HOH . E 5 HOH A 41 4437 41 HOH HOH . E 5 HOH A 42 4438 42 HOH HOH . E 5 HOH A 43 4439 43 HOH HOH . E 5 HOH A 44 4440 44 HOH HOH . E 5 HOH A 45 4441 45 HOH HOH . E 5 HOH A 46 4442 46 HOH HOH . E 5 HOH A 47 4443 47 HOH HOH . E 5 HOH A 48 4444 48 HOH HOH . E 5 HOH A 49 4445 49 HOH HOH . E 5 HOH A 50 4446 50 HOH HOH . E 5 HOH A 51 4447 51 HOH HOH . E 5 HOH A 52 4448 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . C 3 45.42 32.501 5.677 1 56.3 ? N SAH 4261 A 1 HETATM 2 C CA SAH . . . C 3 45.434 31.218 4.854 1 66.91 ? CA SAH 4261 A 1 HETATM 3 C CB SAH . . . C 3 44.274 30.949 3.982 1 67.61 ? CB SAH 4261 A 1 HETATM 4 C CG SAH . . . C 3 42.904 30.9 4.512 1 68.34 ? CG SAH 4261 A 1 HETATM 5 S SD SAH . . . C 3 41.847 31.289 3.049 1 52.63 ? SD SAH 4261 A 1 HETATM 6 C C SAH . . . C 3 46.669 31.211 3.892 1 69.83 ? C SAH 4261 A 1 HETATM 7 O O SAH . . . C 3 47.444 32.181 3.868 1 77.76 ? O SAH 4261 A 1 HETATM 8 O OXT SAH . . . C 3 46.785 30.152 3.16 1 67.02 ? OXT SAH 4261 A 1 HETATM 9 C C5' SAH . . . C 3 40.407 31.947 3.763 1 53.2 ? C5' SAH 4261 A 1 HETATM 10 C C4' SAH . . . C 3 40.065 31.342 5.208 1 59.11 ? C4' SAH 4261 A 1 HETATM 11 O O4' SAH . . . C 3 38.849 32.018 5.44 1 66.63 ? O4' SAH 4261 A 1 HETATM 12 C C3' SAH . . . C 3 39.718 29.869 5.214 1 61.83 ? C3' SAH 4261 A 1 HETATM 13 O O3' SAH . . . C 3 40.437 29.198 6.233 1 63.9 ? O3' SAH 4261 A 1 HETATM 14 C C2' SAH . . . C 3 38.166 29.873 5.416 1 65.43 ? C2' SAH 4261 A 1 HETATM 15 O O2' SAH . . . C 3 37.728 28.67 6.048 1 66.89 ? O2' SAH 4261 A 1 HETATM 16 C C1' SAH . . . C 3 37.979 31.155 6.231 1 66.25 ? C1' SAH 4261 A 1 HETATM 17 N N9 SAH . . . C 3 36.78 31.737 6.245 1 67.85 ? N9 SAH 4261 A 1 HETATM 18 C C8 SAH . . . C 3 35.904 32.027 5.228 1 68.91 ? C8 SAH 4261 A 1 HETATM 19 N N7 SAH . . . C 3 34.814 32.598 5.59 1 74.39 ? N7 SAH 4261 A 1 HETATM 20 C C5 SAH . . . C 3 34.932 32.723 6.985 1 67.94 ? C5 SAH 4261 A 1 HETATM 21 C C6 SAH . . . C 3 34.037 33.274 7.947 1 72.98 ? C6 SAH 4261 A 1 HETATM 22 N N6 SAH . . . C 3 32.852 33.809 7.633 1 77.73 ? N6 SAH 4261 A 1 HETATM 23 N N1 SAH . . . C 3 34.486 33.224 9.244 1 74.59 ? N1 SAH 4261 A 1 HETATM 24 C C2 SAH . . . C 3 35.683 32.684 9.593 1 66.88 ? C2 SAH 4261 A 1 HETATM 25 N N3 SAH . . . C 3 36.563 32.15 8.687 1 61.6 ? N3 SAH 4261 A 1 HETATM 26 C C4 SAH . . . C 3 36.118 32.192 7.412 1 64.85 ? C4 SAH 4261 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 428 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #