data_1X1C # _model_server_result.job_id wfgglwxr1iMvPJl4JsSYYQ _model_server_result.datetime_utc '2024-11-18 05:48:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1x1c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":4261}' # _entry.id 1X1C # _exptl.entry_id 1X1C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1X1C _cell.length_a 81.615 _cell.length_b 81.615 _cell.length_c 250.96 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1X1C _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_554 x,x-y,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 -41.826667 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 32 A HIS 11 1_555 F ZN ZN . A ZN 5005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc2 A NE2 HIS 211 A HIS 190 1_555 D ZN ZN . A ZN 5003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc3 A OD1 ASP 307 A ASP 286 1_555 C ZN ZN . A ZN 5002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc4 A NE2 HIS 311 A HIS 290 1_555 C ZN ZN . A ZN 5002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc5 A OD2 ASP 350 A ASP 329 12_554 F ZN ZN . A ZN 5005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? metalc ? metalc6 A OD1 ASP 350 A ASP 329 12_554 F ZN ZN . A ZN 5005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 290 n n N HN1 SAH sing 291 n n N HN2 SAH sing 292 n n CA CB SAH sing 293 n n CA C SAH sing 294 n n CA HA SAH sing 295 n n CB CG SAH sing 296 n n CB HB1 SAH sing 297 n n CB HB2 SAH sing 298 n n CG SD SAH sing 299 n n CG HG1 SAH sing 300 n n CG HG2 SAH sing 301 n n SD C5' SAH sing 302 n n C O SAH doub 303 n n C OXT SAH sing 304 n n OXT HXT SAH sing 305 n n C5' C4' SAH sing 306 n n C5' "H5'1" SAH sing 307 n n C5' "H5'2" SAH sing 308 n n C4' O4' SAH sing 309 n n C4' C3' SAH sing 310 n n C4' H4' SAH sing 311 n n O4' C1' SAH sing 312 n n C3' O3' SAH sing 313 n n C3' C2' SAH sing 314 n n C3' H3' SAH sing 315 n n O3' HO3' SAH sing 316 n n C2' O2' SAH sing 317 n n C2' C1' SAH sing 318 n n C2' H2' SAH sing 319 n n O2' HO2' SAH sing 320 n n C1' N9 SAH sing 321 n n C1' H1' SAH sing 322 n n N9 C8 SAH sing 323 n y N9 C4 SAH sing 324 n y C8 N7 SAH doub 325 n y C8 H8 SAH sing 326 n n N7 C5 SAH sing 327 n y C5 C6 SAH sing 328 n y C5 C4 SAH doub 329 n y C6 N6 SAH sing 330 n n C6 N1 SAH doub 331 n y N6 HN61 SAH sing 332 n n N6 HN62 SAH sing 333 n n N1 C2 SAH sing 334 n y C2 N3 SAH doub 335 n y C2 H2 SAH sing 336 n n N3 C4 SAH sing 337 n y # _atom_sites.entry_id 1X1C _atom_sites.fract_transf_matrix[1][1] 0.012253 _atom_sites.fract_transf_matrix[1][2] 0.007074 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014148 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003985 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 5001 5001 ZN ZN2 . C 2 ZN A 1 5002 5002 ZN ZN2 . D 2 ZN A 1 5003 5003 ZN ZN2 . E 2 ZN A 1 5004 5004 ZN ZN2 . F 2 ZN A 1 5005 5005 ZN ZN2 . G 3 SO4 A 1 4396 4396 SO4 SO4 . H 4 SAH A 1 4261 4261 SAH SAH . I 5 GOL A 1 2431 2431 GOL GOL . J 6 HOH A 1 5006 1 HOH HOH . J 6 HOH A 2 5007 2 HOH HOH . J 6 HOH A 3 5008 3 HOH HOH . J 6 HOH A 4 5009 4 HOH HOH . J 6 HOH A 5 5010 5 HOH HOH . J 6 HOH A 6 5011 6 HOH HOH . J 6 HOH A 7 5012 7 HOH HOH . J 6 HOH A 8 5013 8 HOH HOH . J 6 HOH A 9 5014 9 HOH HOH . J 6 HOH A 10 5015 10 HOH HOH . J 6 HOH A 11 5016 11 HOH HOH . J 6 HOH A 12 5017 12 HOH HOH . J 6 HOH A 13 5018 13 HOH HOH . J 6 HOH A 14 5019 14 HOH HOH . J 6 HOH A 15 5020 15 HOH HOH . J 6 HOH A 16 5021 16 HOH HOH . J 6 HOH A 17 5022 17 HOH HOH . J 6 HOH A 18 5023 18 HOH HOH . J 6 HOH A 19 5024 19 HOH HOH . J 6 HOH A 20 5025 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . H 4 45.766 32.949 5.744 1 49.5 ? N SAH 4261 A 1 HETATM 2 C CA SAH . . . H 4 45.735 31.635 4.97 1 64.71 ? CA SAH 4261 A 1 HETATM 3 C CB SAH . . . H 4 44.545 31.319 4.176 1 74.44 ? CB SAH 4261 A 1 HETATM 4 C CG SAH . . . H 4 43.186 31.288 4.755 1 84.55 ? CG SAH 4261 A 1 HETATM 5 S SD SAH . . . H 4 42.157 31.635 3.278 1 72.96 ? SD SAH 4261 A 1 HETATM 6 C C SAH . . . H 4 46.951 31.589 3.977 1 71.35 ? C SAH 4261 A 1 HETATM 7 O O SAH . . . H 4 47.73 32.552 3.923 1 72.74 ? O SAH 4261 A 1 HETATM 8 O OXT SAH . . . H 4 47.049 30.514 3.253 1 61.64 ? OXT SAH 4261 A 1 HETATM 9 C C5' SAH . . . H 4 40.675 32.295 3.884 1 78.71 ? C5' SAH 4261 A 1 HETATM 10 C C4' SAH . . . H 4 40.271 31.73 5.313 1 77.13 ? C4' SAH 4261 A 1 HETATM 11 O O4' SAH . . . H 4 39.052 32.411 5.479 1 88.25 ? O4' SAH 4261 A 1 HETATM 12 C C3' SAH . . . H 4 39.913 30.266 5.371 1 83.19 ? C3' SAH 4261 A 1 HETATM 13 O O3' SAH . . . H 4 40.644 29.628 6.414 1 72.96 ? O3' SAH 4261 A 1 HETATM 14 C C2' SAH . . . H 4 38.349 30.307 5.579 1 89.22 ? C2' SAH 4261 A 1 HETATM 15 O O2' SAH . . . H 4 37.864 29.147 6.251 1 88.18 ? O2' SAH 4261 A 1 HETATM 16 C C1' SAH . . . H 4 38.193 31.62 6.337 1 86.24 ? C1' SAH 4261 A 1 HETATM 17 N N9 SAH . . . H 4 37.009 32.227 6.341 1 85.08 ? N9 SAH 4261 A 1 HETATM 18 C C8 SAH . . . H 4 36.15 32.614 5.328 1 76.74 ? C8 SAH 4261 A 1 HETATM 19 N N7 SAH . . . H 4 35.07 33.198 5.718 1 83.89 ? N7 SAH 4261 A 1 HETATM 20 C C5 SAH . . . H 4 35.181 33.224 7.133 1 79.34 ? C5 SAH 4261 A 1 HETATM 21 C C6 SAH . . . H 4 34.3 33.747 8.14 1 83.93 ? C6 SAH 4261 A 1 HETATM 22 N N6 SAH . . . H 4 33.134 34.343 7.873 1 89.09 ? N6 SAH 4261 A 1 HETATM 23 N N1 SAH . . . H 4 34.745 33.588 9.433 1 89.08 ? N1 SAH 4261 A 1 HETATM 24 C C2 SAH . . . H 4 35.929 32.988 9.751 1 87.71 ? C2 SAH 4261 A 1 HETATM 25 N N3 SAH . . . H 4 36.798 32.479 8.811 1 86.13 ? N3 SAH 4261 A 1 HETATM 26 C C4 SAH . . . H 4 36.359 32.635 7.53 1 80.79 ? C4 SAH 4261 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #