data_1X1D # _model_server_result.job_id IpgZENkeBl8pycEC19ScLQ _model_server_result.datetime_utc '2024-10-18 20:23:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1x1d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1019}' # _entry.id 1X1D # _exptl.entry_id 1X1D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1X1D _cell.length_a 81.613 _cell.length_b 81.613 _cell.length_c 251.65 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1X1D _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_554 x,x-y,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 -41.941667 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 1X1D _atom_sites.fract_transf_matrix[1][1] 0.012253 _atom_sites.fract_transf_matrix[1][2] 0.007074 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014148 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003974 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 5001 5001 ZN ZN2 . C 3 SO4 A 1 4396 4396 SO4 SO4 . D 4 SAH A 1 4261 4261 SAH SAH . E 5 GOL A 1 1019 19 GOL GOL . F 6 HOH A 1 5002 1 HOH HOH . F 6 HOH A 2 5003 2 HOH HOH . F 6 HOH A 3 5004 3 HOH HOH . F 6 HOH A 4 5005 4 HOH HOH . F 6 HOH A 5 5006 5 HOH HOH . F 6 HOH A 6 5007 6 HOH HOH . F 6 HOH A 7 5008 7 HOH HOH . F 6 HOH A 8 5009 8 HOH HOH . F 6 HOH A 9 5010 9 HOH HOH . F 6 HOH A 10 5011 10 HOH HOH . F 6 HOH A 11 5012 11 HOH HOH . F 6 HOH A 12 5013 12 HOH HOH . F 6 HOH A 13 5014 13 HOH HOH . F 6 HOH A 14 5015 14 HOH HOH . F 6 HOH A 15 5016 15 HOH HOH . F 6 HOH A 16 5017 16 HOH HOH . F 6 HOH A 17 5018 17 HOH HOH . F 6 HOH A 18 5019 18 HOH HOH . F 6 HOH A 19 5020 19 HOH HOH . F 6 HOH A 20 5021 20 HOH HOH . F 6 HOH A 21 5022 21 HOH HOH . F 6 HOH A 22 5023 22 HOH HOH . F 6 HOH A 23 5024 23 HOH HOH . F 6 HOH A 24 5025 24 HOH HOH . F 6 HOH A 25 5026 25 HOH HOH . F 6 HOH A 26 5027 26 HOH HOH . F 6 HOH A 27 5028 27 HOH HOH . F 6 HOH A 28 5029 28 HOH HOH . F 6 HOH A 29 5030 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 5 30.654 16.403 10.938 1 83.32 ? C1 GOL 1019 A 1 HETATM 2 O O1 GOL . . . E 5 31.666 15.223 10.531 1 85.27 ? O1 GOL 1019 A 1 HETATM 3 C C2 GOL . . . E 5 30.923 17.768 10.806 1 86.74 ? C2 GOL 1019 A 1 HETATM 4 O O2 GOL . . . E 5 32.242 18.011 10.844 1 84.38 ? O2 GOL 1019 A 1 HETATM 5 C C3 GOL . . . E 5 29.886 18.384 10.73 1 88.03 ? C3 GOL 1019 A 1 HETATM 6 O O3 GOL . . . E 5 28.351 18.661 10.621 1 90.84 ? O3 GOL 1019 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #