data_1X1D
#
_model_server_result.job_id            gLAFB_wHUuuQmvJwU8jJow 
_model_server_result.datetime_utc      '2024-12-14 05:42:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1x1d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":4261}' 
#
_entry.id    1X1D 
#
_exptl.entry_id    1X1D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1X1D 
_cell.length_a            81.613 
_cell.length_b            81.613 
_cell.length_c            251.65 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1X1D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA,PQS dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1 
A,B,C,D,E,F 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_554 x,x-y,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 -41.941667 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 290 n n 
N HN1 SAH sing 291 n n 
N HN2 SAH sing 292 n n 
CA CB SAH sing 293 n n 
CA C SAH sing 294 n n 
CA HA SAH sing 295 n n 
CB CG SAH sing 296 n n 
CB HB1 SAH sing 297 n n 
CB HB2 SAH sing 298 n n 
CG SD SAH sing 299 n n 
CG HG1 SAH sing 300 n n 
CG HG2 SAH sing 301 n n 
SD C5' SAH sing 302 n n 
C O SAH doub 303 n n 
C OXT SAH sing 304 n n 
OXT HXT SAH sing 305 n n 
C5' C4' SAH sing 306 n n 
C5' "H5'1" SAH sing 307 n n 
C5' "H5'2" SAH sing 308 n n 
C4' O4' SAH sing 309 n n 
C4' C3' SAH sing 310 n n 
C4' H4' SAH sing 311 n n 
O4' C1' SAH sing 312 n n 
C3' O3' SAH sing 313 n n 
C3' C2' SAH sing 314 n n 
C3' H3' SAH sing 315 n n 
O3' HO3' SAH sing 316 n n 
C2' O2' SAH sing 317 n n 
C2' C1' SAH sing 318 n n 
C2' H2' SAH sing 319 n n 
O2' HO2' SAH sing 320 n n 
C1' N9 SAH sing 321 n n 
C1' H1' SAH sing 322 n n 
N9 C8 SAH sing 323 n y 
N9 C4 SAH sing 324 n y 
C8 N7 SAH doub 325 n y 
C8 H8 SAH sing 326 n n 
N7 C5 SAH sing 327 n y 
C5 C6 SAH sing 328 n y 
C5 C4 SAH doub 329 n y 
C6 N6 SAH sing 330 n n 
C6 N1 SAH doub 331 n y 
N6 HN61 SAH sing 332 n n 
N6 HN62 SAH sing 333 n n 
N1 C2 SAH sing 334 n y 
C2 N3 SAH doub 335 n y 
C2 H2 SAH sing 336 n n 
N3 C4 SAH sing 337 n y 
#
_atom_sites.entry_id                     1X1D 
_atom_sites.fract_transf_matrix[1][1]    0.012253 
_atom_sites.fract_transf_matrix[1][2]    0.007074 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014148 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003974 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 5001 5001 ZN ZN2 . 
C 3 SO4 A 1 4396 4396 SO4 SO4 . 
D 4 SAH A 1 4261 4261 SAH SAH . 
E 5 GOL A 1 1019 19 GOL GOL . 
F 6 HOH A 1 5002 1 HOH HOH . 
F 6 HOH A 2 5003 2 HOH HOH . 
F 6 HOH A 3 5004 3 HOH HOH . 
F 6 HOH A 4 5005 4 HOH HOH . 
F 6 HOH A 5 5006 5 HOH HOH . 
F 6 HOH A 6 5007 6 HOH HOH . 
F 6 HOH A 7 5008 7 HOH HOH . 
F 6 HOH A 8 5009 8 HOH HOH . 
F 6 HOH A 9 5010 9 HOH HOH . 
F 6 HOH A 10 5011 10 HOH HOH . 
F 6 HOH A 11 5012 11 HOH HOH . 
F 6 HOH A 12 5013 12 HOH HOH . 
F 6 HOH A 13 5014 13 HOH HOH . 
F 6 HOH A 14 5015 14 HOH HOH . 
F 6 HOH A 15 5016 15 HOH HOH . 
F 6 HOH A 16 5017 16 HOH HOH . 
F 6 HOH A 17 5018 17 HOH HOH . 
F 6 HOH A 18 5019 18 HOH HOH . 
F 6 HOH A 19 5020 19 HOH HOH . 
F 6 HOH A 20 5021 20 HOH HOH . 
F 6 HOH A 21 5022 21 HOH HOH . 
F 6 HOH A 22 5023 22 HOH HOH . 
F 6 HOH A 23 5024 23 HOH HOH . 
F 6 HOH A 24 5025 24 HOH HOH . 
F 6 HOH A 25 5026 25 HOH HOH . 
F 6 HOH A 26 5027 26 HOH HOH . 
F 6 HOH A 27 5028 27 HOH HOH . 
F 6 HOH A 28 5029 28 HOH HOH . 
F 6 HOH A 29 5030 29 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . D 4 45.54 32.938 5.585 1 68.92 ? N SAH 4261 A 1 
HETATM 2 C CA SAH . . . D 4 45.49 31.559 4.936 1 77.34 ? CA SAH 4261 A 1 
HETATM 3 C CB SAH . . . D 4 44.34 31.238 4.066 1 77.58 ? CB SAH 4261 A 1 
HETATM 4 C CG SAH . . . D 4 42.947 31.358 4.576 1 78.08 ? CG SAH 4261 A 1 
HETATM 5 S SD SAH . . . D 4 41.922 31.616 3.066 1 65.01 ? SD SAH 4261 A 1 
HETATM 6 C C SAH . . . D 4 46.806 31.351 4.09 1 81.64 ? C SAH 4261 A 1 
HETATM 7 O O SAH . . . D 4 47.662 32.253 4.036 1 85.7 ? O SAH 4261 A 1 
HETATM 8 O OXT SAH . . . D 4 46.895 30.212 3.49 1 79.95 ? OXT SAH 4261 A 1 
HETATM 9 C C5' SAH . . . D 4 40.42 32.267 3.659 1 70 ? C5' SAH 4261 A 1 
HETATM 10 C C4' SAH . . . D 4 40.03 31.697 5.096 1 75.18 ? C4' SAH 4261 A 1 
HETATM 11 O O4' SAH . . . D 4 38.793 32.338 5.324 1 86.66 ? O4' SAH 4261 A 1 
HETATM 12 C C3' SAH . . . D 4 39.72 30.22 5.187 1 78.84 ? C3' SAH 4261 A 1 
HETATM 13 O O3' SAH . . . D 4 40.539 29.618 6.184 1 78.38 ? O3' SAH 4261 A 1 
HETATM 14 C C2' SAH . . . D 4 38.186 30.212 5.517 1 81.62 ? C2' SAH 4261 A 1 
HETATM 15 O O2' SAH . . . D 4 37.81 29.043 6.238 1 81.25 ? O2' SAH 4261 A 1 
HETATM 16 C C1' SAH . . . D 4 38.053 31.531 6.276 1 81.12 ? C1' SAH 4261 A 1 
HETATM 17 N N9 SAH . . . D 4 36.844 32.066 6.404 1 80.15 ? N9 SAH 4261 A 1 
HETATM 18 C C8 SAH . . . D 4 35.83 32.349 5.509 1 76.54 ? C8 SAH 4261 A 1 
HETATM 19 N N7 SAH . . . D 4 34.778 32.891 6.029 1 79.51 ? N7 SAH 4261 A 1 
HETATM 20 C C5 SAH . . . D 4 35.087 32.996 7.412 1 80.25 ? C5 SAH 4261 A 1 
HETATM 21 C C6 SAH . . . D 4 34.328 33.52 8.523 1 84.89 ? C6 SAH 4261 A 1 
HETATM 22 N N6 SAH . . . D 4 33.099 34.036 8.418 1 86.49 ? N6 SAH 4261 A 1 
HETATM 23 N N1 SAH . . . D 4 34.966 33.453 9.737 1 88.85 ? N1 SAH 4261 A 1 
HETATM 24 C C2 SAH . . . D 4 36.216 32.942 9.896 1 85.33 ? C2 SAH 4261 A 1 
HETATM 25 N N3 SAH . . . D 4 36.971 32.436 8.861 1 81.82 ? N3 SAH 4261 A 1 
HETATM 26 C C4 SAH . . . D 4 36.344 32.501 7.655 1 79.41 ? C4 SAH 4261 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           259 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           26 
#