data_1X1S
#
_model_server_result.job_id            6bYEg114uj3-u_nMRHkfqQ 
_model_server_result.datetime_utc      '2024-11-05 04:37:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1x1s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":179}' 
#
_entry.id    1X1S 
#
_exptl.entry_id    1X1S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              522.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1X1S 
_cell.length_a            109.711 
_cell.length_b            109.711 
_cell.length_c            69.426 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1X1S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        177 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 6 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 27 A SER 27 1_555 B MG MG . A MG 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc2 C O2G GNP . A GNP 179 1_555 B MG MG . A MG 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc3 C O2B GNP . A GNP 179 1_555 B MG MG . A MG 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc4 B MG MG . A MG 180 1_555 D O HOH . A HOH 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc5 B MG MG . A MG 180 1_555 D O HOH . A HOH 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? 
metalc ? metalc6 B MG MG . A MG 180 1_555 D O HOH . A HOH 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
#
_chem_comp.formula           'C10 H17 N6 O13 P3' 
_chem_comp.formula_weight    522.196 
_chem_comp.id                GNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GNP doub 116 n n 
PG O2G GNP sing 117 n n 
PG O3G GNP sing 118 n n 
PG N3B GNP sing 119 n n 
O2G HOG2 GNP sing 120 n n 
O3G HOG3 GNP sing 121 n n 
N3B PB GNP sing 122 n n 
N3B HNB3 GNP sing 123 n n 
PB O1B GNP doub 124 n n 
PB O2B GNP sing 125 n n 
PB O3A GNP sing 126 n n 
O2B HOB2 GNP sing 127 n n 
O3A PA GNP sing 128 n n 
PA O1A GNP doub 129 n n 
PA O2A GNP sing 130 n n 
PA O5' GNP sing 131 n n 
O2A HOA2 GNP sing 132 n n 
O5' C5' GNP sing 133 n n 
C5' C4' GNP sing 134 n n 
C5' "H5'2" GNP sing 135 n n 
C5' "H5'1" GNP sing 136 n n 
C4' O4' GNP sing 137 n n 
C4' C3' GNP sing 138 n n 
C4' H4' GNP sing 139 n n 
O4' C1' GNP sing 140 n n 
C3' O3' GNP sing 141 n n 
C3' C2' GNP sing 142 n n 
C3' H3' GNP sing 143 n n 
O3' HO3' GNP sing 144 n n 
C2' O2' GNP sing 145 n n 
C2' C1' GNP sing 146 n n 
C2' H2' GNP sing 147 n n 
O2' HO2' GNP sing 148 n n 
C1' N9 GNP sing 149 n n 
C1' H1' GNP sing 150 n n 
N9 C8 GNP sing 151 n y 
N9 C4 GNP sing 152 n y 
C8 N7 GNP doub 153 n y 
C8 H8 GNP sing 154 n n 
N7 C5 GNP sing 155 n y 
C5 C6 GNP sing 156 n y 
C5 C4 GNP doub 157 n y 
C6 O6 GNP doub 158 n n 
C6 N1 GNP sing 159 n y 
N1 C2 GNP sing 160 n y 
N1 HN1 GNP sing 161 n n 
C2 N2 GNP sing 162 n n 
C2 N3 GNP doub 163 n y 
N2 HN21 GNP sing 164 n n 
N2 HN22 GNP sing 165 n n 
N3 C4 GNP sing 166 n y 
#
_atom_sites.entry_id                     1X1S 
_atom_sites.fract_transf_matrix[1][1]    0.009115 
_atom_sites.fract_transf_matrix[1][2]    0.005262 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010525 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014404 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 180 180 MG MG . 
C 3 GNP A 1 179 179 GNP GNP . 
D 4 HOH A 1 181 1 HOH HOH . 
D 4 HOH A 2 182 2 HOH HOH . 
D 4 HOH A 3 183 3 HOH HOH . 
D 4 HOH A 4 184 4 HOH HOH . 
D 4 HOH A 5 185 5 HOH HOH . 
D 4 HOH A 6 186 6 HOH HOH . 
D 4 HOH A 7 187 7 HOH HOH . 
D 4 HOH A 8 188 8 HOH HOH . 
D 4 HOH A 9 189 9 HOH HOH . 
D 4 HOH A 10 190 10 HOH HOH . 
D 4 HOH A 11 191 11 HOH HOH . 
D 4 HOH A 12 192 12 HOH HOH . 
D 4 HOH A 13 193 13 HOH HOH . 
D 4 HOH A 14 194 14 HOH HOH . 
D 4 HOH A 15 195 15 HOH HOH . 
D 4 HOH A 16 196 16 HOH HOH . 
D 4 HOH A 17 197 17 HOH HOH . 
D 4 HOH A 18 198 18 HOH HOH . 
D 4 HOH A 19 199 19 HOH HOH . 
D 4 HOH A 20 200 20 HOH HOH . 
D 4 HOH A 21 201 21 HOH HOH . 
D 4 HOH A 22 202 22 HOH HOH . 
D 4 HOH A 23 203 23 HOH HOH . 
D 4 HOH A 24 204 24 HOH HOH . 
D 4 HOH A 25 205 25 HOH HOH . 
D 4 HOH A 26 206 26 HOH HOH . 
D 4 HOH A 27 207 27 HOH HOH . 
D 4 HOH A 28 208 28 HOH HOH . 
D 4 HOH A 29 209 29 HOH HOH . 
D 4 HOH A 30 210 30 HOH HOH . 
D 4 HOH A 31 211 31 HOH HOH . 
D 4 HOH A 32 212 32 HOH HOH . 
D 4 HOH A 33 213 33 HOH HOH . 
D 4 HOH A 34 214 34 HOH HOH . 
D 4 HOH A 35 215 35 HOH HOH . 
D 4 HOH A 36 216 36 HOH HOH . 
D 4 HOH A 37 217 37 HOH HOH . 
D 4 HOH A 38 218 38 HOH HOH . 
D 4 HOH A 39 219 39 HOH HOH . 
D 4 HOH A 40 220 40 HOH HOH . 
D 4 HOH A 41 221 41 HOH HOH . 
D 4 HOH A 42 222 42 HOH HOH . 
D 4 HOH A 43 223 43 HOH HOH . 
D 4 HOH A 44 224 44 HOH HOH . 
D 4 HOH A 45 225 45 HOH HOH . 
D 4 HOH A 46 226 46 HOH HOH . 
D 4 HOH A 47 227 47 HOH HOH . 
D 4 HOH A 48 228 48 HOH HOH . 
D 4 HOH A 49 229 49 HOH HOH . 
D 4 HOH A 50 230 50 HOH HOH . 
D 4 HOH A 51 231 51 HOH HOH . 
D 4 HOH A 52 232 52 HOH HOH . 
D 4 HOH A 53 233 53 HOH HOH . 
D 4 HOH A 54 234 54 HOH HOH . 
D 4 HOH A 55 235 55 HOH HOH . 
D 4 HOH A 56 236 56 HOH HOH . 
D 4 HOH A 57 237 57 HOH HOH . 
D 4 HOH A 58 238 58 HOH HOH . 
D 4 HOH A 59 239 59 HOH HOH . 
D 4 HOH A 60 240 60 HOH HOH . 
D 4 HOH A 61 241 61 HOH HOH . 
D 4 HOH A 62 242 62 HOH HOH . 
D 4 HOH A 63 243 63 HOH HOH . 
D 4 HOH A 64 244 64 HOH HOH . 
D 4 HOH A 65 245 65 HOH HOH . 
D 4 HOH A 66 246 66 HOH HOH . 
D 4 HOH A 67 247 67 HOH HOH . 
D 4 HOH A 68 248 68 HOH HOH . 
D 4 HOH A 69 249 69 HOH HOH . 
D 4 HOH A 70 250 70 HOH HOH . 
D 4 HOH A 71 251 71 HOH HOH . 
D 4 HOH A 72 252 72 HOH HOH . 
D 4 HOH A 73 253 73 HOH HOH . 
D 4 HOH A 74 254 74 HOH HOH . 
D 4 HOH A 75 255 75 HOH HOH . 
D 4 HOH A 76 256 76 HOH HOH . 
D 4 HOH A 77 257 77 HOH HOH . 
D 4 HOH A 78 258 78 HOH HOH . 
D 4 HOH A 79 259 79 HOH HOH . 
D 4 HOH A 80 260 80 HOH HOH . 
D 4 HOH A 81 261 81 HOH HOH . 
D 4 HOH A 82 262 82 HOH HOH . 
D 4 HOH A 83 263 83 HOH HOH . 
D 4 HOH A 84 264 84 HOH HOH . 
D 4 HOH A 85 265 85 HOH HOH . 
D 4 HOH A 86 266 86 HOH HOH . 
D 4 HOH A 87 267 87 HOH HOH . 
D 4 HOH A 88 268 88 HOH HOH . 
D 4 HOH A 89 269 89 HOH HOH . 
D 4 HOH A 90 270 90 HOH HOH . 
D 4 HOH A 91 271 91 HOH HOH . 
D 4 HOH A 92 272 92 HOH HOH . 
D 4 HOH A 93 273 93 HOH HOH . 
D 4 HOH A 94 274 94 HOH HOH . 
D 4 HOH A 95 275 95 HOH HOH . 
D 4 HOH A 96 276 96 HOH HOH . 
D 4 HOH A 97 277 97 HOH HOH . 
D 4 HOH A 98 278 98 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GNP . . . C 3 -11.704 45.009 9.462 1 23.21 ? PG GNP 179 A 1 
HETATM 2 O O1G GNP . . . C 3 -12.973 45.579 8.974 1 24.4 ? O1G GNP 179 A 1 
HETATM 3 O O2G GNP . . . C 3 -10.893 44.325 8.422 1 21.09 ? O2G GNP 179 A 1 
HETATM 4 O O3G GNP . . . C 3 -12.119 44.143 10.642 1 20.62 ? O3G GNP 179 A 1 
HETATM 5 N N3B GNP . . . C 3 -10.834 46.243 10.001 1 20.71 ? N3B GNP 179 A 1 
HETATM 6 P PB GNP . . . C 3 -9.322 46.158 10.518 1 18.13 ? PB GNP 179 A 1 
HETATM 7 O O1B GNP . . . C 3 -9.349 45.673 11.907 1 18.98 ? O1B GNP 179 A 1 
HETATM 8 O O2B GNP . . . C 3 -8.548 45.341 9.557 1 17.36 ? O2B GNP 179 A 1 
HETATM 9 O O3A GNP . . . C 3 -8.779 47.605 10.562 1 20.36 ? O3A GNP 179 A 1 
HETATM 10 P PA GNP . . . C 3 -7.869 48.325 9.531 1 20.86 ? PA GNP 179 A 1 
HETATM 11 O O1A GNP . . . C 3 -8.477 48.193 8.185 1 21.04 ? O1A GNP 179 A 1 
HETATM 12 O O2A GNP . . . C 3 -6.451 47.891 9.611 1 21.91 ? O2A GNP 179 A 1 
HETATM 13 O O5' GNP . . . C 3 -7.823 49.815 10.006 1 22.04 ? O5' GNP 179 A 1 
HETATM 14 C C5' GNP . . . C 3 -8.956 50.668 9.994 1 23.49 ? C5' GNP 179 A 1 
HETATM 15 C C4' GNP . . . C 3 -8.476 52.103 9.794 1 24.01 ? C4' GNP 179 A 1 
HETATM 16 O O4' GNP . . . C 3 -7.693 52.561 10.939 1 23.14 ? O4' GNP 179 A 1 
HETATM 17 C C3' GNP . . . C 3 -7.593 52.371 8.576 1 23.47 ? C3' GNP 179 A 1 
HETATM 18 O O3' GNP . . . C 3 -7.88 53.663 8.083 1 23.48 ? O3' GNP 179 A 1 
HETATM 19 C C2' GNP . . . C 3 -6.18 52.36 9.153 1 23.81 ? C2' GNP 179 A 1 
HETATM 20 O O2' GNP . . . C 3 -5.264 53.147 8.423 1 24.81 ? O2' GNP 179 A 1 
HETATM 21 C C1' GNP . . . C 3 -6.392 52.969 10.534 1 22.07 ? C1' GNP 179 A 1 
HETATM 22 N N9 GNP . . . C 3 -5.413 52.499 11.522 1 22.27 ? N9 GNP 179 A 1 
HETATM 23 C C8 GNP . . . C 3 -5.097 51.195 11.835 1 21.52 ? C8 GNP 179 A 1 
HETATM 24 N N7 GNP . . . C 3 -4.185 51.079 12.764 1 21.2 ? N7 GNP 179 A 1 
HETATM 25 C C5 GNP . . . C 3 -3.868 52.383 13.096 1 21.54 ? C5 GNP 179 A 1 
HETATM 26 C C6 GNP . . . C 3 -2.942 52.894 14.046 1 22.14 ? C6 GNP 179 A 1 
HETATM 27 O O6 GNP . . . C 3 -2.191 52.259 14.803 1 22.5 ? O6 GNP 179 A 1 
HETATM 28 N N1 GNP . . . C 3 -2.935 54.29 14.078 1 22.45 ? N1 GNP 179 A 1 
HETATM 29 C C2 GNP . . . C 3 -3.731 55.096 13.279 1 24.2 ? C2 GNP 179 A 1 
HETATM 30 N N2 GNP . . . C 3 -3.607 56.434 13.421 1 24.96 ? N2 GNP 179 A 1 
HETATM 31 N N3 GNP . . . C 3 -4.591 54.62 12.383 1 22.32 ? N3 GNP 179 A 1 
HETATM 32 C C4 GNP . . . C 3 -4.617 53.269 12.344 1 21.56 ? C4 GNP 179 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           32 
#