data_1X29
#
_model_server_result.job_id            '_EGgiKGQPaPtJuLtBTBotA' 
_model_server_result.datetime_utc      '2024-11-28 18:18:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1x29 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1413}' 
#
_entry.id    1X29 
#
_exptl.entry_id    1X29 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              392.298 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-2-METHYL-L-GLUTAMIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1X29 
_cell.length_a            143.21 
_cell.length_b            143.21 
_cell.length_c            81.39 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1X29 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C14 H21 N2 O9 P' 
_chem_comp.formula_weight    392.298 
_chem_comp.id                PMG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-2-METHYL-L-GLUTAMIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "N-PYRIDOXYL-2-METHYL-L-GLUTAMIC ACID-5'-MONOPHOSPHATE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PMG sing 260 n y 
N1 C6 PMG doub 261 n y 
C2 C2A PMG sing 262 n n 
C2 C3 PMG doub 263 n y 
C2A H2A1 PMG sing 264 n n 
C2A H2A2 PMG sing 265 n n 
C2A H2A3 PMG sing 266 n n 
C3 O3 PMG sing 267 n n 
C3 C4 PMG sing 268 n y 
O3 HO3 PMG sing 269 n n 
C4 C4A PMG sing 270 n n 
C4 C5 PMG doub 271 n y 
C4A N PMG sing 272 n n 
C4A H4A1 PMG sing 273 n n 
C4A H4A2 PMG sing 274 n n 
C5 C6 PMG sing 275 n y 
C5 C5A PMG sing 276 n n 
C6 H6 PMG sing 277 n n 
C5A OP4 PMG sing 278 n n 
C5A H5A1 PMG sing 279 n n 
C5A H5A2 PMG sing 280 n n 
OP4 P PMG sing 281 n n 
P OP1 PMG doub 282 n n 
P OP2 PMG sing 283 n n 
P OP3 PMG sing 284 n n 
OP2 HP2 PMG sing 285 n n 
OP3 HP3 PMG sing 286 n n 
N CA PMG sing 287 n n 
N HN PMG sing 288 n n 
CA CB2 PMG sing 289 n n 
CA CB1 PMG sing 290 n n 
CA C PMG sing 291 n n 
CB2 HB21 PMG sing 292 n n 
CB2 HB22 PMG sing 293 n n 
CB2 HB23 PMG sing 294 n n 
CB1 CG PMG sing 295 n n 
CB1 HB11 PMG sing 296 n n 
CB1 HB12 PMG sing 297 n n 
CG CD PMG sing 298 n n 
CG HG1 PMG sing 299 n n 
CG HG2 PMG sing 300 n n 
CD OE1 PMG sing 301 n n 
CD OE2 PMG doub 302 n n 
OE1 HE1 PMG sing 303 n n 
C O PMG doub 304 n n 
C OXT PMG sing 305 n n 
OXT HXT PMG sing 306 n n 
#
_atom_sites.entry_id                     1X29 
_atom_sites.fract_transf_matrix[1][1]    0.006983 
_atom_sites.fract_transf_matrix[1][2]    0.004031 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008063 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012287 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PMG A 1 413 413 PMG LMG . 
D 2 PMG B 1 1413 1413 PMG LMG . 
E 3 HOH A 1 414 2 HOH HOH . 
E 3 HOH A 2 415 3 HOH HOH . 
E 3 HOH A 3 416 4 HOH HOH . 
E 3 HOH A 4 417 5 HOH HOH . 
E 3 HOH A 5 418 7 HOH HOH . 
E 3 HOH A 6 419 8 HOH HOH . 
E 3 HOH A 7 420 11 HOH HOH . 
E 3 HOH A 8 421 12 HOH HOH . 
E 3 HOH A 9 422 13 HOH HOH . 
E 3 HOH A 10 423 15 HOH HOH . 
E 3 HOH A 11 424 16 HOH HOH . 
E 3 HOH A 12 425 17 HOH HOH . 
E 3 HOH A 13 426 19 HOH HOH . 
E 3 HOH A 14 427 21 HOH HOH . 
E 3 HOH A 15 428 24 HOH HOH . 
E 3 HOH A 16 429 29 HOH HOH . 
E 3 HOH A 17 430 30 HOH HOH . 
E 3 HOH A 18 431 31 HOH HOH . 
E 3 HOH A 19 432 33 HOH HOH . 
E 3 HOH A 20 433 35 HOH HOH . 
E 3 HOH A 21 434 37 HOH HOH . 
E 3 HOH A 22 435 38 HOH HOH . 
E 3 HOH A 23 436 39 HOH HOH . 
E 3 HOH A 24 437 41 HOH HOH . 
E 3 HOH A 25 438 43 HOH HOH . 
E 3 HOH A 26 439 45 HOH HOH . 
E 3 HOH A 27 440 46 HOH HOH . 
E 3 HOH A 28 441 48 HOH HOH . 
E 3 HOH A 29 442 49 HOH HOH . 
E 3 HOH A 30 443 50 HOH HOH . 
E 3 HOH A 31 444 53 HOH HOH . 
E 3 HOH A 32 445 54 HOH HOH . 
E 3 HOH A 33 446 55 HOH HOH . 
E 3 HOH A 34 447 56 HOH HOH . 
E 3 HOH A 35 448 57 HOH HOH . 
E 3 HOH A 36 449 58 HOH HOH . 
E 3 HOH A 37 450 62 HOH HOH . 
E 3 HOH A 38 451 64 HOH HOH . 
E 3 HOH A 39 452 65 HOH HOH . 
E 3 HOH A 40 453 66 HOH HOH . 
E 3 HOH A 41 454 67 HOH HOH . 
E 3 HOH A 42 455 69 HOH HOH . 
E 3 HOH A 43 456 71 HOH HOH . 
E 3 HOH A 44 457 72 HOH HOH . 
E 3 HOH A 45 458 73 HOH HOH . 
E 3 HOH A 46 459 74 HOH HOH . 
E 3 HOH A 47 460 78 HOH HOH . 
E 3 HOH A 48 461 79 HOH HOH . 
E 3 HOH A 49 462 80 HOH HOH . 
E 3 HOH A 50 463 82 HOH HOH . 
E 3 HOH A 51 464 84 HOH HOH . 
E 3 HOH A 52 465 87 HOH HOH . 
E 3 HOH A 53 466 88 HOH HOH . 
E 3 HOH A 54 467 89 HOH HOH . 
E 3 HOH A 55 468 90 HOH HOH . 
E 3 HOH A 56 469 92 HOH HOH . 
E 3 HOH A 57 470 93 HOH HOH . 
E 3 HOH A 58 471 95 HOH HOH . 
E 3 HOH A 59 472 96 HOH HOH . 
E 3 HOH A 60 473 101 HOH HOH . 
E 3 HOH A 61 474 104 HOH HOH . 
E 3 HOH A 62 475 106 HOH HOH . 
E 3 HOH A 63 476 108 HOH HOH . 
E 3 HOH A 64 477 109 HOH HOH . 
E 3 HOH A 65 478 111 HOH HOH . 
E 3 HOH A 66 479 112 HOH HOH . 
E 3 HOH A 67 480 114 HOH HOH . 
E 3 HOH A 68 481 115 HOH HOH . 
E 3 HOH A 69 482 116 HOH HOH . 
E 3 HOH A 70 483 117 HOH HOH . 
E 3 HOH A 71 484 119 HOH HOH . 
E 3 HOH A 72 485 121 HOH HOH . 
E 3 HOH A 73 486 123 HOH HOH . 
E 3 HOH A 74 487 126 HOH HOH . 
E 3 HOH A 75 488 129 HOH HOH . 
E 3 HOH A 76 489 131 HOH HOH . 
E 3 HOH A 77 490 132 HOH HOH . 
E 3 HOH A 78 491 134 HOH HOH . 
E 3 HOH A 79 492 139 HOH HOH . 
E 3 HOH A 80 493 140 HOH HOH . 
E 3 HOH A 81 494 142 HOH HOH . 
E 3 HOH A 82 495 144 HOH HOH . 
E 3 HOH A 83 496 146 HOH HOH . 
E 3 HOH A 84 497 149 HOH HOH . 
E 3 HOH A 85 498 150 HOH HOH . 
E 3 HOH A 86 499 157 HOH HOH . 
E 3 HOH A 87 500 158 HOH HOH . 
E 3 HOH A 88 501 159 HOH HOH . 
E 3 HOH A 89 502 163 HOH HOH . 
E 3 HOH A 90 503 164 HOH HOH . 
E 3 HOH A 91 504 165 HOH HOH . 
E 3 HOH A 92 505 166 HOH HOH . 
E 3 HOH A 93 506 167 HOH HOH . 
E 3 HOH A 94 507 169 HOH HOH . 
E 3 HOH A 95 508 170 HOH HOH . 
E 3 HOH A 96 509 171 HOH HOH . 
E 3 HOH A 97 510 173 HOH HOH . 
E 3 HOH A 98 511 174 HOH HOH . 
E 3 HOH A 99 512 177 HOH HOH . 
E 3 HOH A 100 513 179 HOH HOH . 
E 3 HOH A 101 514 180 HOH HOH . 
E 3 HOH A 102 515 181 HOH HOH . 
E 3 HOH A 103 516 182 HOH HOH . 
E 3 HOH A 104 517 184 HOH HOH . 
E 3 HOH A 105 518 187 HOH HOH . 
E 3 HOH A 106 519 189 HOH HOH . 
E 3 HOH A 107 520 190 HOH HOH . 
F 3 HOH B 1 1414 1 HOH HOH . 
F 3 HOH B 2 1415 6 HOH HOH . 
F 3 HOH B 3 1416 9 HOH HOH . 
F 3 HOH B 4 1417 10 HOH HOH . 
F 3 HOH B 5 1418 14 HOH HOH . 
F 3 HOH B 6 1419 18 HOH HOH . 
F 3 HOH B 7 1420 20 HOH HOH . 
F 3 HOH B 8 1421 22 HOH HOH . 
F 3 HOH B 9 1422 23 HOH HOH . 
F 3 HOH B 10 1423 25 HOH HOH . 
F 3 HOH B 11 1424 26 HOH HOH . 
F 3 HOH B 12 1425 27 HOH HOH . 
F 3 HOH B 13 1426 28 HOH HOH . 
F 3 HOH B 14 1427 32 HOH HOH . 
F 3 HOH B 15 1428 34 HOH HOH . 
F 3 HOH B 16 1429 36 HOH HOH . 
F 3 HOH B 17 1430 40 HOH HOH . 
F 3 HOH B 18 1431 42 HOH HOH . 
F 3 HOH B 19 1432 44 HOH HOH . 
F 3 HOH B 20 1433 47 HOH HOH . 
F 3 HOH B 21 1434 51 HOH HOH . 
F 3 HOH B 22 1435 52 HOH HOH . 
F 3 HOH B 23 1436 59 HOH HOH . 
F 3 HOH B 24 1437 60 HOH HOH . 
F 3 HOH B 25 1438 61 HOH HOH . 
F 3 HOH B 26 1439 63 HOH HOH . 
F 3 HOH B 27 1440 68 HOH HOH . 
F 3 HOH B 28 1441 70 HOH HOH . 
F 3 HOH B 29 1442 75 HOH HOH . 
F 3 HOH B 30 1443 76 HOH HOH . 
F 3 HOH B 31 1444 77 HOH HOH . 
F 3 HOH B 32 1445 81 HOH HOH . 
F 3 HOH B 33 1446 83 HOH HOH . 
F 3 HOH B 34 1447 85 HOH HOH . 
F 3 HOH B 35 1448 86 HOH HOH . 
F 3 HOH B 36 1449 91 HOH HOH . 
F 3 HOH B 37 1450 94 HOH HOH . 
F 3 HOH B 38 1451 97 HOH HOH . 
F 3 HOH B 39 1452 98 HOH HOH . 
F 3 HOH B 40 1453 99 HOH HOH . 
F 3 HOH B 41 1454 100 HOH HOH . 
F 3 HOH B 42 1455 102 HOH HOH . 
F 3 HOH B 43 1456 103 HOH HOH . 
F 3 HOH B 44 1457 105 HOH HOH . 
F 3 HOH B 45 1458 107 HOH HOH . 
F 3 HOH B 46 1459 110 HOH HOH . 
F 3 HOH B 47 1460 113 HOH HOH . 
F 3 HOH B 48 1461 118 HOH HOH . 
F 3 HOH B 49 1462 120 HOH HOH . 
F 3 HOH B 50 1463 122 HOH HOH . 
F 3 HOH B 51 1464 124 HOH HOH . 
F 3 HOH B 52 1465 125 HOH HOH . 
F 3 HOH B 53 1466 127 HOH HOH . 
F 3 HOH B 54 1467 128 HOH HOH . 
F 3 HOH B 55 1468 130 HOH HOH . 
F 3 HOH B 56 1469 133 HOH HOH . 
F 3 HOH B 57 1470 135 HOH HOH . 
F 3 HOH B 58 1471 136 HOH HOH . 
F 3 HOH B 59 1472 137 HOH HOH . 
F 3 HOH B 60 1473 138 HOH HOH . 
F 3 HOH B 61 1474 141 HOH HOH . 
F 3 HOH B 62 1475 143 HOH HOH . 
F 3 HOH B 63 1476 145 HOH HOH . 
F 3 HOH B 64 1477 147 HOH HOH . 
F 3 HOH B 65 1478 148 HOH HOH . 
F 3 HOH B 66 1479 151 HOH HOH . 
F 3 HOH B 67 1480 152 HOH HOH . 
F 3 HOH B 68 1481 153 HOH HOH . 
F 3 HOH B 69 1482 154 HOH HOH . 
F 3 HOH B 70 1483 155 HOH HOH . 
F 3 HOH B 71 1484 156 HOH HOH . 
F 3 HOH B 72 1485 160 HOH HOH . 
F 3 HOH B 73 1486 161 HOH HOH . 
F 3 HOH B 74 1487 162 HOH HOH . 
F 3 HOH B 75 1488 168 HOH HOH . 
F 3 HOH B 76 1489 172 HOH HOH . 
F 3 HOH B 77 1490 175 HOH HOH . 
F 3 HOH B 78 1491 176 HOH HOH . 
F 3 HOH B 79 1492 178 HOH HOH . 
F 3 HOH B 80 1493 183 HOH HOH . 
F 3 HOH B 81 1494 185 HOH HOH . 
F 3 HOH B 82 1495 186 HOH HOH . 
F 3 HOH B 83 1496 188 HOH HOH . 
F 3 HOH B 84 1497 191 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PMG . . . D 2 40.578 103.956 -11.183 1 30.58 ? N1 PMG 1413 B 1 
HETATM 2 C C2 PMG . . . D 2 40.081 105.152 -11.846 1 30.7 ? C2 PMG 1413 B 1 
HETATM 3 C C2A PMG . . . D 2 41.114 106.27 -11.722 1 31.96 ? C2A PMG 1413 B 1 
HETATM 4 C C3 PMG . . . D 2 38.713 105.043 -12.488 1 30.78 ? C3 PMG 1413 B 1 
HETATM 5 O O3 PMG . . . D 2 38.333 106.196 -13.081 1 30.1 ? O3 PMG 1413 B 1 
HETATM 6 C C4 PMG . . . D 2 37.919 103.801 -12.448 1 29.95 ? C4 PMG 1413 B 1 
HETATM 7 C C4A PMG . . . D 2 36.515 103.688 -13.111 1 30.46 ? C4A PMG 1413 B 1 
HETATM 8 C C5 PMG . . . D 2 38.603 102.668 -11.714 1 27.07 ? C5 PMG 1413 B 1 
HETATM 9 C C6 PMG . . . D 2 39.894 102.732 -11.096 1 27.62 ? C6 PMG 1413 B 1 
HETATM 10 C C5A PMG . . . D 2 37.987 101.297 -11.547 1 24.8 ? C5A PMG 1413 B 1 
HETATM 11 O OP4 PMG . . . D 2 37.515 100.71 -12.696 1 21.85 ? OP4 PMG 1413 B 1 
HETATM 12 P P PMG . . . D 2 36.822 99.266 -12.794 1 22.94 ? P PMG 1413 B 1 
HETATM 13 O OP1 PMG . . . D 2 37.573 98.396 -13.683 1 20.8 ? OP1 PMG 1413 B 1 
HETATM 14 O OP2 PMG . . . D 2 35.434 99.621 -13.21 1 22.34 ? OP2 PMG 1413 B 1 
HETATM 15 O OP3 PMG . . . D 2 36.801 98.661 -11.373 1 18.52 ? OP3 PMG 1413 B 1 
HETATM 16 N N PMG . . . D 2 35.764 105.084 -13.1 1 36.38 ? N PMG 1413 B 1 
HETATM 17 C CA PMG . . . D 2 34.457 105.431 -13.655 1 35.73 ? CA PMG 1413 B 1 
HETATM 18 C CB2 PMG . . . D 2 34.628 105.517 -15.19 1 35.41 ? CB2 PMG 1413 B 1 
HETATM 19 C CB1 PMG . . . D 2 33.425 104.312 -13.265 1 37.46 ? CB1 PMG 1413 B 1 
HETATM 20 C CG PMG . . . D 2 32.493 104.507 -12.085 1 42.13 ? CG PMG 1413 B 1 
HETATM 21 C CD PMG . . . D 2 33.189 104.243 -10.785 1 43.27 ? CD PMG 1413 B 1 
HETATM 22 O OE1 PMG . . . D 2 33.248 105.189 -9.967 1 44.91 ? OE1 PMG 1413 B 1 
HETATM 23 O OE2 PMG . . . D 2 33.669 103.088 -10.59 1 47.16 ? OE2 PMG 1413 B 1 
HETATM 24 C C PMG . . . D 2 34.086 106.863 -13.145 1 33.97 ? C PMG 1413 B 1 
HETATM 25 O O PMG . . . D 2 32.969 107.329 -13.42 1 34.46 ? O PMG 1413 B 1 
HETATM 26 O OXT PMG . . . D 2 34.966 107.485 -12.482 1 36.46 ? OXT PMG 1413 B 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           26 
#