data_1X2H # _model_server_result.job_id kJyQrz2Qf51avEMiQDHkLw _model_server_result.datetime_utc '2024-12-04 22:02:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1x2h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":338}' # _entry.id 1X2H # _exptl.entry_id 1X2H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 206.326 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LIPOIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1X2H _cell.length_a 83.2 _cell.length_b 111.6 _cell.length_c 289.6 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1X2H _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,F 1 1 B,E,G 2 1 C,H 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 26 A GLN 26 1_555 A N MSE 27 A MSE 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C MSE 27 A MSE 27 1_555 A N PRO 28 A PRO 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 A C ARG 59 A ARG 59 1_555 A N MSE 60 A MSE 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 60 A MSE 60 1_555 A N GLU 61 A GLU 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale5 A C PHE 88 A PHE 88 1_555 A N MSE 89 A MSE 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale6 A C MSE 89 A MSE 89 1_555 A N ALA 90 A ALA 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale7 A C ASP 305 A ASP 305 1_555 A N MSE 306 A MSE 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale8 A C MSE 306 A MSE 306 1_555 A N LEU 307 A LEU 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale9 A C TRP 331 A TRP 331 1_555 A N MSE 332 A MSE 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale10 A C MSE 332 A MSE 332 1_555 A N ALA 333 A ALA 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 B C GLN 26 B GLN 26 1_555 B N MSE 27 B MSE 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale12 B C MSE 27 B MSE 27 1_555 B N PRO 28 B PRO 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale13 B C ARG 59 B ARG 59 1_555 B N MSE 60 B MSE 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale14 B C MSE 60 B MSE 60 1_555 B N GLU 61 B GLU 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale15 B C PHE 88 B PHE 88 1_555 B N MSE 89 B MSE 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.309 ? covale ? covale16 B C MSE 89 B MSE 89 1_555 B N ALA 90 B ALA 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale17 B C ASP 305 B ASP 305 1_555 B N MSE 306 B MSE 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale18 B C MSE 306 B MSE 306 1_555 B N LEU 307 B LEU 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale19 B C TRP 331 B TRP 331 1_555 B N MSE 332 B MSE 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale20 B C MSE 332 B MSE 332 1_555 B N ALA 333 B ALA 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale21 C C GLN 26 C GLN 26 1_555 C N MSE 27 C MSE 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale22 C C MSE 27 C MSE 27 1_555 C N PRO 28 C PRO 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale23 C C ARG 59 C ARG 59 1_555 C N MSE 60 C MSE 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale24 C C MSE 60 C MSE 60 1_555 C N GLU 61 C GLU 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale25 C C PHE 88 C PHE 88 1_555 C N MSE 89 C MSE 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale26 C C MSE 89 C MSE 89 1_555 C N ALA 90 C ALA 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale27 C C ASP 305 C ASP 305 1_555 C N MSE 306 C MSE 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale28 C C MSE 306 C MSE 306 1_555 C N LEU 307 C LEU 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale29 C C TRP 331 C TRP 331 1_555 C N MSE 332 C MSE 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale30 C C MSE 332 C MSE 332 1_555 C N ALA 333 C ALA 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? # _chem_comp.formula 'C8 H14 O2 S2' _chem_comp.formula_weight 206.326 _chem_comp.id LPA _chem_comp.mon_nstd_flag . _chem_comp.name 'LIPOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '5-[(3R)-1,2-dithiolan-3-yl]pentanoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 LPA sing 194 n n C1 O2 LPA doub 195 n n C1 O1 LPA sing 196 n n O1 HO1 LPA sing 197 n n C3 C2 LPA sing 198 n n C2 H2 LPA sing 199 n n C2 H2A LPA sing 200 n n C4 C3 LPA sing 201 n n C3 H3 LPA sing 202 n n C3 H3A LPA sing 203 n n C5 C4 LPA sing 204 n n C4 H4 LPA sing 205 n n C4 H4A LPA sing 206 n n C6 C5 LPA sing 207 n n C5 H5 LPA sing 208 n n C5 H5A LPA sing 209 n n C7 C6 LPA sing 210 n n C6 S6 LPA sing 211 n n C6 H6 LPA sing 212 n n S8 S6 LPA sing 213 n n C8 C7 LPA sing 214 n n C7 H7 LPA sing 215 n n C7 H7A LPA sing 216 n n C8 S8 LPA sing 217 n n C8 H8 LPA sing 218 n n C8 H8A LPA sing 219 n n # _atom_sites.entry_id 1X2H _atom_sites.fract_transf_matrix[1][1] 0.012019 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008961 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003453 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 LPA A 1 338 1 LPA LPA . E 2 LPA B 1 338 1 LPA LPA . F 3 HOH A 1 339 2 HOH HOH . F 3 HOH A 2 340 4 HOH HOH . F 3 HOH A 3 341 5 HOH HOH . F 3 HOH A 4 342 6 HOH HOH . F 3 HOH A 5 343 8 HOH HOH . F 3 HOH A 6 344 9 HOH HOH . F 3 HOH A 7 345 12 HOH HOH . F 3 HOH A 8 346 13 HOH HOH . F 3 HOH A 9 347 15 HOH HOH . F 3 HOH A 10 348 19 HOH HOH . F 3 HOH A 11 349 20 HOH HOH . G 3 HOH B 1 339 3 HOH HOH . G 3 HOH B 2 340 10 HOH HOH . G 3 HOH B 3 341 11 HOH HOH . G 3 HOH B 4 342 14 HOH HOH . G 3 HOH B 5 343 16 HOH HOH . G 3 HOH B 6 344 17 HOH HOH . G 3 HOH B 7 345 21 HOH HOH . G 3 HOH B 8 346 22 HOH HOH . H 3 HOH C 1 338 1 HOH HOH . H 3 HOH C 2 339 7 HOH HOH . H 3 HOH C 3 340 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LPA . . . E 2 30.282 84.485 62.483 1 78.97 ? C1 LPA 338 B 1 HETATM 2 O O1 LPA . . . E 2 31.239 84.975 63.172 1 79.47 ? O1 LPA 338 B 1 HETATM 3 C C2 LPA . . . E 2 30.56 83.685 61.195 1 76.96 ? C2 LPA 338 B 1 HETATM 4 O O2 LPA . . . E 2 29.06 84.607 62.804 1 80.64 ? O2 LPA 338 B 1 HETATM 5 C C3 LPA . . . E 2 31.43 84.673 60.345 1 74.38 ? C3 LPA 338 B 1 HETATM 6 C C4 LPA . . . E 2 32.829 84.043 60.317 1 74.83 ? C4 LPA 338 B 1 HETATM 7 C C5 LPA . . . E 2 33.204 83.69 58.871 1 75.38 ? C5 LPA 338 B 1 HETATM 8 C C6 LPA . . . E 2 33.646 82.244 58.685 1 75.66 ? C6 LPA 338 B 1 HETATM 9 S S6 LPA . . . E 2 32.257 81.159 58.775 1 78.26 ? S6 LPA 338 B 1 HETATM 10 C C7 LPA . . . E 2 34.256 82.099 57.29 1 76.45 ? C7 LPA 338 B 1 HETATM 11 C C8 LPA . . . E 2 33.326 81.628 56.151 1 77.32 ? C8 LPA 338 B 1 HETATM 12 S S8 LPA . . . E 2 32.001 80.688 56.844 1 77.6 ? S8 LPA 338 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #