data_1X3N # _model_server_result.job_id ks6shcYtVuGImYT1byvFyQ _model_server_result.datetime_utc '2024-11-02 21:33:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1x3n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":404}' # _entry.id 1X3N # _exptl.entry_id 1X3N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1X3N _cell.length_a 111.275 _cell.length_b 111.275 _cell.length_c 66.813 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1X3N _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 66.813 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 1X3N _atom_sites.fract_transf_matrix[1][1] 0.008987 _atom_sites.fract_transf_matrix[1][2] 0.005188 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010377 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014967 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 403 401 EDO EDO . C 3 ANP A 1 404 402 ANP ANP . D 4 HOH A 1 405 1 HOH HOH . D 4 HOH A 2 406 2 HOH HOH . D 4 HOH A 3 407 3 HOH HOH . D 4 HOH A 4 408 4 HOH HOH . D 4 HOH A 5 409 5 HOH HOH . D 4 HOH A 6 410 6 HOH HOH . D 4 HOH A 7 411 7 HOH HOH . D 4 HOH A 8 412 8 HOH HOH . D 4 HOH A 9 413 9 HOH HOH . D 4 HOH A 10 414 10 HOH HOH . D 4 HOH A 11 415 11 HOH HOH . D 4 HOH A 12 416 12 HOH HOH . D 4 HOH A 13 417 13 HOH HOH . D 4 HOH A 14 418 14 HOH HOH . D 4 HOH A 15 419 15 HOH HOH . D 4 HOH A 16 420 16 HOH HOH . D 4 HOH A 17 421 17 HOH HOH . D 4 HOH A 18 422 18 HOH HOH . D 4 HOH A 19 423 19 HOH HOH . D 4 HOH A 20 424 20 HOH HOH . D 4 HOH A 21 425 21 HOH HOH . D 4 HOH A 22 426 22 HOH HOH . D 4 HOH A 23 427 23 HOH HOH . D 4 HOH A 24 428 24 HOH HOH . D 4 HOH A 25 429 25 HOH HOH . D 4 HOH A 26 430 26 HOH HOH . D 4 HOH A 27 431 27 HOH HOH . D 4 HOH A 28 432 28 HOH HOH . D 4 HOH A 29 433 29 HOH HOH . D 4 HOH A 30 434 30 HOH HOH . D 4 HOH A 31 435 31 HOH HOH . D 4 HOH A 32 436 32 HOH HOH . D 4 HOH A 33 437 33 HOH HOH . D 4 HOH A 34 438 34 HOH HOH . D 4 HOH A 35 439 35 HOH HOH . D 4 HOH A 36 440 36 HOH HOH . D 4 HOH A 37 441 37 HOH HOH . D 4 HOH A 38 442 38 HOH HOH . D 4 HOH A 39 443 39 HOH HOH . D 4 HOH A 40 444 40 HOH HOH . D 4 HOH A 41 445 41 HOH HOH . D 4 HOH A 42 446 42 HOH HOH . D 4 HOH A 43 447 43 HOH HOH . D 4 HOH A 44 448 44 HOH HOH . D 4 HOH A 45 449 45 HOH HOH . D 4 HOH A 46 450 46 HOH HOH . D 4 HOH A 47 451 47 HOH HOH . D 4 HOH A 48 452 48 HOH HOH . D 4 HOH A 49 453 49 HOH HOH . D 4 HOH A 50 454 50 HOH HOH . D 4 HOH A 51 455 51 HOH HOH . D 4 HOH A 52 456 52 HOH HOH . D 4 HOH A 53 457 53 HOH HOH . D 4 HOH A 54 458 54 HOH HOH . D 4 HOH A 55 459 55 HOH HOH . D 4 HOH A 56 460 56 HOH HOH . D 4 HOH A 57 461 57 HOH HOH . D 4 HOH A 58 462 58 HOH HOH . D 4 HOH A 59 463 59 HOH HOH . D 4 HOH A 60 464 60 HOH HOH . D 4 HOH A 61 465 61 HOH HOH . D 4 HOH A 62 466 62 HOH HOH . D 4 HOH A 63 467 63 HOH HOH . D 4 HOH A 64 468 64 HOH HOH . D 4 HOH A 65 469 65 HOH HOH . D 4 HOH A 66 470 66 HOH HOH . D 4 HOH A 67 471 67 HOH HOH . D 4 HOH A 68 472 68 HOH HOH . D 4 HOH A 69 473 69 HOH HOH . D 4 HOH A 70 474 70 HOH HOH . D 4 HOH A 71 475 71 HOH HOH . D 4 HOH A 72 476 72 HOH HOH . D 4 HOH A 73 477 73 HOH HOH . D 4 HOH A 74 478 74 HOH HOH . D 4 HOH A 75 479 75 HOH HOH . D 4 HOH A 76 480 76 HOH HOH . D 4 HOH A 77 481 77 HOH HOH . D 4 HOH A 78 482 78 HOH HOH . D 4 HOH A 79 483 79 HOH HOH . D 4 HOH A 80 484 80 HOH HOH . D 4 HOH A 81 485 81 HOH HOH . D 4 HOH A 82 486 82 HOH HOH . D 4 HOH A 83 487 83 HOH HOH . D 4 HOH A 84 488 84 HOH HOH . D 4 HOH A 85 489 85 HOH HOH . D 4 HOH A 86 490 86 HOH HOH . D 4 HOH A 87 491 87 HOH HOH . D 4 HOH A 88 492 88 HOH HOH . D 4 HOH A 89 493 89 HOH HOH . D 4 HOH A 90 494 90 HOH HOH . D 4 HOH A 91 495 91 HOH HOH . D 4 HOH A 92 496 92 HOH HOH . D 4 HOH A 93 497 93 HOH HOH . D 4 HOH A 94 498 94 HOH HOH . D 4 HOH A 95 499 95 HOH HOH . D 4 HOH A 96 500 96 HOH HOH . D 4 HOH A 97 501 97 HOH HOH . D 4 HOH A 98 502 98 HOH HOH . D 4 HOH A 99 503 99 HOH HOH . D 4 HOH A 100 504 100 HOH HOH . D 4 HOH A 101 505 101 HOH HOH . D 4 HOH A 102 506 102 HOH HOH . D 4 HOH A 103 507 103 HOH HOH . D 4 HOH A 104 508 104 HOH HOH . D 4 HOH A 105 509 105 HOH HOH . D 4 HOH A 106 510 106 HOH HOH . D 4 HOH A 107 511 107 HOH HOH . D 4 HOH A 108 512 108 HOH HOH . D 4 HOH A 109 513 109 HOH HOH . D 4 HOH A 110 514 110 HOH HOH . D 4 HOH A 111 515 111 HOH HOH . D 4 HOH A 112 516 112 HOH HOH . D 4 HOH A 113 517 113 HOH HOH . D 4 HOH A 114 518 114 HOH HOH . D 4 HOH A 115 519 115 HOH HOH . D 4 HOH A 116 520 116 HOH HOH . D 4 HOH A 117 521 117 HOH HOH . D 4 HOH A 118 522 118 HOH HOH . D 4 HOH A 119 523 119 HOH HOH . D 4 HOH A 120 524 120 HOH HOH . D 4 HOH A 121 525 121 HOH HOH . D 4 HOH A 122 526 122 HOH HOH . D 4 HOH A 123 527 123 HOH HOH . D 4 HOH A 124 528 124 HOH HOH . D 4 HOH A 125 529 125 HOH HOH . D 4 HOH A 126 530 126 HOH HOH . D 4 HOH A 127 531 127 HOH HOH . D 4 HOH A 128 532 128 HOH HOH . D 4 HOH A 129 533 129 HOH HOH . D 4 HOH A 130 534 130 HOH HOH . D 4 HOH A 131 535 131 HOH HOH . D 4 HOH A 132 536 132 HOH HOH . D 4 HOH A 133 537 133 HOH HOH . D 4 HOH A 134 538 134 HOH HOH . D 4 HOH A 135 539 135 HOH HOH . D 4 HOH A 136 540 136 HOH HOH . D 4 HOH A 137 541 137 HOH HOH . D 4 HOH A 138 542 138 HOH HOH . D 4 HOH A 139 543 139 HOH HOH . D 4 HOH A 140 544 140 HOH HOH . D 4 HOH A 141 545 141 HOH HOH . D 4 HOH A 142 546 142 HOH HOH . D 4 HOH A 143 547 143 HOH HOH . D 4 HOH A 144 548 144 HOH HOH . D 4 HOH A 145 549 145 HOH HOH . D 4 HOH A 146 550 146 HOH HOH . D 4 HOH A 147 551 147 HOH HOH . D 4 HOH A 148 552 148 HOH HOH . D 4 HOH A 149 553 149 HOH HOH . D 4 HOH A 150 554 150 HOH HOH . D 4 HOH A 151 555 151 HOH HOH . D 4 HOH A 152 556 152 HOH HOH . D 4 HOH A 153 557 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 13.105 41.724 51.057 1 82.23 ? PG ANP 404 A 1 HETATM 2 O O1G ANP . . . C 3 13.199 41.283 49.484 1 79.21 ? O1G ANP 404 A 1 HETATM 3 O O2G ANP . . . C 3 12.134 40.565 51.726 1 81.21 ? O2G ANP 404 A 1 HETATM 4 O O3G ANP . . . C 3 12.389 43.215 51.232 1 81.41 ? O3G ANP 404 A 1 HETATM 5 P PB ANP . . . C 3 13.977 41.725 53.892 1 77.54 ? PB ANP 404 A 1 HETATM 6 O O1B ANP . . . C 3 13.367 40.284 54.36 1 76.26 ? O1B ANP 404 A 1 HETATM 7 O O2B ANP . . . C 3 12.74 42.789 54.211 1 75.11 ? O2B ANP 404 A 1 HETATM 8 N N3B ANP . . . C 3 14.4 41.733 52.183 1 77.92 ? N3B ANP 404 A 1 HETATM 9 P PA ANP . . . C 3 16.239 43.461 54.912 1 65.2 ? PA ANP 404 A 1 HETATM 10 O O1A ANP . . . C 3 16.114 44.594 53.906 1 63.26 ? O1A ANP 404 A 1 HETATM 11 O O2A ANP . . . C 3 15.91 43.954 56.377 1 67.37 ? O2A ANP 404 A 1 HETATM 12 O O3A ANP . . . C 3 15.236 42.198 54.839 1 70.56 ? O3A ANP 404 A 1 HETATM 13 O O5' ANP . . . C 3 17.736 42.764 54.938 1 63.73 ? O5' ANP 404 A 1 HETATM 14 C C5' ANP . . . C 3 18.123 41.636 55.845 1 60.21 ? C5' ANP 404 A 1 HETATM 15 C C4' ANP . . . C 3 19.458 41.338 55.517 1 59.42 ? C4' ANP 404 A 1 HETATM 16 O O4' ANP . . . C 3 20.528 42.398 55.628 1 59.04 ? O4' ANP 404 A 1 HETATM 17 C C3' ANP . . . C 3 20.21 40.139 56.298 1 59.58 ? C3' ANP 404 A 1 HETATM 18 O O3' ANP . . . C 3 20.974 39.368 55.325 1 59.54 ? O3' ANP 404 A 1 HETATM 19 C C2' ANP . . . C 3 21.111 40.75 57.246 1 59.45 ? C2' ANP 404 A 1 HETATM 20 O O2' ANP . . . C 3 22.249 39.946 57.658 1 61.87 ? O2' ANP 404 A 1 HETATM 21 C C1' ANP . . . C 3 21.505 42.035 56.62 1 58.48 ? C1' ANP 404 A 1 HETATM 22 N N9 ANP . . . C 3 21.803 42.814 57.628 1 55.56 ? N9 ANP 404 A 1 HETATM 23 C C8 ANP . . . C 3 20.843 43.353 58.606 1 54.55 ? C8 ANP 404 A 1 HETATM 24 N N7 ANP . . . C 3 21.455 44.13 59.569 1 54.58 ? N7 ANP 404 A 1 HETATM 25 C C5 ANP . . . C 3 22.87 44.094 59.204 1 54.13 ? C5 ANP 404 A 1 HETATM 26 C C6 ANP . . . C 3 24.203 44.672 59.723 1 55.02 ? C6 ANP 404 A 1 HETATM 27 N N6 ANP . . . C 3 24.286 45.468 60.85 1 55.19 ? N6 ANP 404 A 1 HETATM 28 N N1 ANP . . . C 3 25.5 44.371 58.994 1 54.36 ? N1 ANP 404 A 1 HETATM 29 C C2 ANP . . . C 3 25.49 43.564 57.834 1 53.22 ? C2 ANP 404 A 1 HETATM 30 N N3 ANP . . . C 3 24.333 43.008 57.307 1 53.42 ? N3 ANP 404 A 1 HETATM 31 C C4 ANP . . . C 3 23.066 43.303 58.017 1 54.07 ? C4 ANP 404 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #