data_1X7J # _model_server_result.job_id 5G8fz0moKd8EmsZiZPRRYQ _model_server_result.datetime_utc '2025-01-21 09:51:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1x7j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 1X7J # _exptl.entry_id 1X7J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 270.237 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GENISTEIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1X7J _cell.length_a 52.231 _cell.length_b 87.667 _cell.length_c 100.113 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1X7J _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C15 H10 O5' _chem_comp.formula_weight 270.237 _chem_comp.id GEN _chem_comp.mon_nstd_flag . _chem_comp.name GENISTEIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "5,7-DIHYDROXY-3-(4-HYDROXYPHENYL)-4H-1-BENZOPYRAN-4-ONE;4',5,7-TRIHYDROXYISOFLAVONE;PRUNETOL;GENISTEOL" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GEN doub 83 n y C1 C10 GEN sing 84 n y C1 H1 GEN sing 85 n n C2 O2 GEN sing 86 n n C2 C3 GEN sing 87 n y O2 H2 GEN sing 88 n n C3 C4 GEN doub 89 n y C3 H3 GEN sing 90 n n C4 O4 GEN sing 91 n n C4 C5 GEN sing 92 n y O4 H4 GEN sing 93 n n C5 C6 GEN sing 94 n y C5 C10 GEN doub 95 n y C6 O6 GEN doub 96 n n C6 C7 GEN sing 97 n y C7 C8 GEN doub 98 n y C7 C11 GEN sing 99 n y C8 O9 GEN sing 100 n y C8 H8 GEN sing 101 n n O9 C10 GEN sing 102 n y C11 C12 GEN doub 103 n y C11 C16 GEN sing 104 n y C12 C13 GEN sing 105 n y C12 H12 GEN sing 106 n n C13 C14 GEN doub 107 n y C13 H13 GEN sing 108 n n C14 O14 GEN sing 109 n n C14 C15 GEN sing 110 n y O14 H14 GEN sing 111 n n C15 C16 GEN doub 112 n y C15 H15 GEN sing 113 n n C16 H16 GEN sing 114 n n # _atom_sites.entry_id 1X7J _atom_sites.fract_transf_matrix[1][1] 0.019146 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011407 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009989 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GEN A 1 201 201 GEN GEN . F 3 GEN B 1 202 202 GEN GEN . G 4 HOH A 1 1 1 HOH HOH . G 4 HOH A 2 2 2 HOH HOH . G 4 HOH A 3 3 3 HOH HOH . G 4 HOH A 4 7 7 HOH HOH . G 4 HOH A 5 10 10 HOH HOH . G 4 HOH A 6 13 13 HOH HOH . G 4 HOH A 7 14 14 HOH HOH . G 4 HOH A 8 15 15 HOH HOH . G 4 HOH A 9 16 16 HOH HOH . G 4 HOH A 10 17 17 HOH HOH . G 4 HOH A 11 18 18 HOH HOH . G 4 HOH A 12 19 19 HOH HOH . G 4 HOH A 13 21 21 HOH HOH . G 4 HOH A 14 22 22 HOH HOH . G 4 HOH A 15 24 24 HOH HOH . G 4 HOH A 16 25 25 HOH HOH . G 4 HOH A 17 28 28 HOH HOH . G 4 HOH A 18 31 31 HOH HOH . G 4 HOH A 19 33 33 HOH HOH . G 4 HOH A 20 34 34 HOH HOH . G 4 HOH A 21 37 37 HOH HOH . G 4 HOH A 22 38 38 HOH HOH . G 4 HOH A 23 42 42 HOH HOH . G 4 HOH A 24 45 45 HOH HOH . G 4 HOH A 25 50 50 HOH HOH . G 4 HOH A 26 51 51 HOH HOH . G 4 HOH A 27 52 52 HOH HOH . G 4 HOH A 28 53 53 HOH HOH . G 4 HOH A 29 55 55 HOH HOH . G 4 HOH A 30 58 58 HOH HOH . G 4 HOH A 31 60 60 HOH HOH . G 4 HOH A 32 61 61 HOH HOH . G 4 HOH A 33 62 62 HOH HOH . G 4 HOH A 34 69 69 HOH HOH . G 4 HOH A 35 70 70 HOH HOH . G 4 HOH A 36 71 71 HOH HOH . G 4 HOH A 37 72 72 HOH HOH . G 4 HOH A 38 74 74 HOH HOH . G 4 HOH A 39 76 76 HOH HOH . G 4 HOH A 40 77 77 HOH HOH . G 4 HOH A 41 78 78 HOH HOH . H 4 HOH B 1 4 4 HOH HOH . H 4 HOH B 2 5 5 HOH HOH . H 4 HOH B 3 6 6 HOH HOH . H 4 HOH B 4 8 8 HOH HOH . H 4 HOH B 5 9 9 HOH HOH . H 4 HOH B 6 11 11 HOH HOH . H 4 HOH B 7 12 12 HOH HOH . H 4 HOH B 8 20 20 HOH HOH . H 4 HOH B 9 23 23 HOH HOH . H 4 HOH B 10 26 26 HOH HOH . H 4 HOH B 11 27 27 HOH HOH . H 4 HOH B 12 29 29 HOH HOH . H 4 HOH B 13 30 30 HOH HOH . H 4 HOH B 14 32 32 HOH HOH . H 4 HOH B 15 35 35 HOH HOH . H 4 HOH B 16 36 36 HOH HOH . H 4 HOH B 17 39 39 HOH HOH . H 4 HOH B 18 40 40 HOH HOH . H 4 HOH B 19 41 41 HOH HOH . H 4 HOH B 20 43 43 HOH HOH . H 4 HOH B 21 44 44 HOH HOH . H 4 HOH B 22 46 46 HOH HOH . H 4 HOH B 23 47 47 HOH HOH . H 4 HOH B 24 48 48 HOH HOH . H 4 HOH B 25 49 49 HOH HOH . H 4 HOH B 26 54 54 HOH HOH . H 4 HOH B 27 56 56 HOH HOH . H 4 HOH B 28 57 57 HOH HOH . H 4 HOH B 29 59 59 HOH HOH . H 4 HOH B 30 63 63 HOH HOH . H 4 HOH B 31 64 64 HOH HOH . H 4 HOH B 32 65 65 HOH HOH . H 4 HOH B 33 66 66 HOH HOH . H 4 HOH B 34 67 67 HOH HOH . H 4 HOH B 35 68 68 HOH HOH . H 4 HOH B 36 73 73 HOH HOH . H 4 HOH B 37 75 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GEN . . . E 3 33.321 35.555 37.783 1 20.45 ? C1 GEN 201 A 1 HETATM 2 C C2 GEN . . . E 3 33.644 36.373 36.662 1 21.23 ? C2 GEN 201 A 1 HETATM 3 O O2 GEN . . . E 3 34.922 36.198 36.129 1 20.92 ? O2 GEN 201 A 1 HETATM 4 C C3 GEN . . . E 3 32.759 37.333 36.077 1 20.35 ? C3 GEN 201 A 1 HETATM 5 C C4 GEN . . . E 3 31.462 37.517 36.618 1 21.06 ? C4 GEN 201 A 1 HETATM 6 O O4 GEN . . . E 3 30.583 38.434 36.084 1 21.77 ? O4 GEN 201 A 1 HETATM 7 C C5 GEN . . . E 3 31.097 36.69 37.771 1 21.05 ? C5 GEN 201 A 1 HETATM 8 C C6 GEN . . . E 3 29.74 36.847 38.376 1 21.16 ? C6 GEN 201 A 1 HETATM 9 O O6 GEN . . . E 3 28.897 37.643 37.955 1 21.45 ? O6 GEN 201 A 1 HETATM 10 C C7 GEN . . . E 3 29.479 35.937 39.569 1 19.47 ? C7 GEN 201 A 1 HETATM 11 C C8 GEN . . . E 3 30.449 35.034 40.041 1 21.32 ? C8 GEN 201 A 1 HETATM 12 O O9 GEN . . . E 3 31.731 34.908 39.443 1 21.01 ? O9 GEN 201 A 1 HETATM 13 C C10 GEN . . . E 3 32.006 35.718 38.356 1 21 ? C10 GEN 201 A 1 HETATM 14 C C11 GEN . . . E 3 28.139 35.919 40.368 1 17.88 ? C11 GEN 201 A 1 HETATM 15 C C12 GEN . . . E 3 26.893 36.098 39.663 1 15.27 ? C12 GEN 201 A 1 HETATM 16 C C13 GEN . . . E 3 25.719 36.071 40.47 1 15.3 ? C13 GEN 201 A 1 HETATM 17 C C14 GEN . . . E 3 25.825 35.877 41.857 1 14.31 ? C14 GEN 201 A 1 HETATM 18 O O14 GEN . . . E 3 24.618 35.864 42.551 1 14.05 ? O14 GEN 201 A 1 HETATM 19 C C15 GEN . . . E 3 27.046 35.694 42.599 1 15.38 ? C15 GEN 201 A 1 HETATM 20 C C16 GEN . . . E 3 28.259 35.72 41.798 1 15.77 ? C16 GEN 201 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #